Wall clock time and date at job start Tue Mar 31 2020 06:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47224 * 2 1 4 4 C 1.50707 * 109.46963 * 119.99909 * 2 1 3 5 5 O 1.21284 * 119.99554 * 103.86393 * 4 2 1 6 6 N 1.34769 * 120.00033 * 283.86217 * 4 2 1 7 7 C 1.46500 * 120.00344 * 0.02562 * 6 4 2 8 8 C 1.46507 * 119.99896 * 179.97438 * 6 4 2 9 9 C 1.50703 * 109.46822 * 90.00308 * 8 6 4 10 10 H 1.08004 * 120.00061 * 359.97438 * 9 8 6 11 11 C 1.37876 * 119.99947 * 180.02562 * 9 8 6 12 12 N 1.31515 * 119.99880 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99899 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47182 * 60.00167 * 13 11 9 15 15 H 1.48506 * 109.46989 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47315 * 300.00092 * 13 11 9 17 17 N 1.46902 * 109.47116 * 240.00047 * 2 1 3 18 18 C 1.46840 * 111.00017 * 76.54488 * 17 2 1 19 19 C 1.53040 * 109.52235 * 174.15954 * 18 17 2 20 20 C 1.53114 * 109.27460 * 59.18482 * 19 18 17 21 21 C 1.53120 * 109.16252 * 302.33959 * 20 19 18 22 22 H 1.08996 * 109.50545 * 297.72014 * 21 20 19 23 23 C 1.50695 * 109.50382 * 177.59547 * 21 20 19 24 24 O 1.21275 * 120.00400 * 270.20032 * 23 21 20 25 25 C 1.47013 * 119.99677 * 90.20087 * 23 21 20 26 26 C 1.39947 * 120.14842 * 359.72355 * 25 23 21 27 27 C 1.37742 * 119.85296 * 179.73936 * 26 25 23 28 28 C 1.38720 * 120.14670 * 0.53753 * 27 26 25 29 29 F 1.35099 * 119.85163 * 179.69482 * 28 27 26 30 30 C 1.38718 * 120.29321 * 359.71646 * 28 27 26 31 31 C 1.37747 * 120.14694 * 0.02562 * 30 28 27 32 32 C 1.46849 * 110.99720 * 312.34027 * 17 2 1 33 33 H 1.08999 * 109.47224 * 179.97438 * 1 2 3 34 34 H 1.09008 * 109.47109 * 299.99758 * 1 2 3 35 35 H 1.08992 * 109.47155 * 59.99888 * 1 2 3 36 36 H 1.08997 * 109.47335 * 89.99757 * 7 6 4 37 37 H 1.09000 * 109.47391 * 209.99846 * 7 6 4 38 38 H 1.09006 * 109.46905 * 330.00135 * 7 6 4 39 39 H 1.09002 * 109.47061 * 209.99830 * 8 6 4 40 40 H 1.08998 * 109.47225 * 330.00607 * 8 6 4 41 41 H 0.97001 * 120.00185 * 180.02562 * 12 11 9 42 42 H 1.08995 * 109.47068 * 294.18159 * 18 17 2 43 43 H 1.09006 * 109.46198 * 54.14723 * 18 17 2 44 44 H 1.08994 * 109.50308 * 299.23858 * 19 18 17 45 45 H 1.09006 * 109.53242 * 179.14469 * 19 18 17 46 46 H 1.09009 * 109.52150 * 182.44224 * 20 19 18 47 47 H 1.08996 * 109.52485 * 62.24918 * 20 19 18 48 48 H 1.08000 * 120.06559 * 0.02562 * 26 25 23 49 49 H 1.08007 * 119.92440 * 180.25819 * 27 26 25 50 50 H 1.08001 * 119.92759 * 179.97438 * 30 28 27 51 51 H 1.08001 * 120.07540 * 179.97438 * 31 30 28 52 52 H 1.09002 * 109.46197 * 305.84986 * 32 17 2 53 53 H 1.08997 * 109.46738 * 65.82338 * 32 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.4717 -1.8375 1.1431 6 7 1.9933 -0.0933 2.4280 7 6 1.4620 1.2679 2.5337 8 6 2.4811 -0.7842 3.6243 9 6 3.9492 -0.4968 3.8068 10 1 4.4671 0.1367 3.1019 11 6 4.6313 -1.0435 4.8730 12 7 4.0010 -1.8161 5.7305 13 14 6.4512 -0.6878 5.0987 14 1 6.6540 0.7750 5.2551 15 1 6.9457 -1.3880 6.3114 16 1 7.2005 -1.1671 3.9096 17 7 2.0197 -0.6925 -1.1995 18 6 1.8943 0.1609 -2.3878 19 6 2.5446 -0.5332 -3.5868 20 6 1.8550 -1.8789 -3.8269 21 6 1.9578 -2.7299 -2.5581 22 1 3.0064 -2.9290 -2.3374 23 6 1.2302 -4.0331 -2.7660 24 8 0.0527 -4.1211 -2.4894 25 6 1.9480 -5.1978 -3.3040 26 6 3.3054 -5.0981 -3.6296 27 6 3.9732 -6.1948 -4.1283 28 6 3.3005 -7.3930 -4.3185 29 9 3.9599 -8.4631 -4.8137 30 6 1.9538 -7.4971 -4.0028 31 6 1.2754 -6.4096 -3.4983 32 6 1.3245 -1.9720 -1.3890 33 1 -0.3633 -1.0276 -0.0005 34 1 -0.3634 0.5138 0.8901 35 1 -0.3633 0.5138 -0.8899 36 1 0.3898 1.2256 2.7250 37 1 1.9571 1.7885 3.3535 38 1 1.6440 1.8023 1.6012 39 1 1.9308 -0.4322 4.4969 40 1 2.3326 -1.8579 3.5098 41 1 4.4808 -2.2004 6.4808 42 1 0.8397 0.3377 -2.5986 43 1 2.3925 1.1131 -2.2053 44 1 3.6025 -0.6977 -3.3823 45 1 2.4383 0.0934 -4.4724 46 1 2.3433 -2.3962 -4.6529 47 1 0.8055 -1.7123 -4.0697 48 1 3.8291 -4.1647 -3.4858 49 1 5.0218 -6.1203 -4.3761 50 1 1.4358 -8.4327 -4.1536 51 1 0.2267 -6.4919 -3.2533 52 1 1.4088 -2.5692 -0.4810 53 1 0.2724 -1.7854 -1.6044 RHF calculation, no. of doubly occupied orbitals= 71 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096414960.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:10 Heat of formation + Delta-G solvation = -101.711807 kcal Electronic energy + Delta-G solvation = -35157.030641 eV Core-core repulsion = 30521.519101 eV Total energy + Delta-G solvation = -4635.511540 eV No. of doubly occupied orbitals = 71 Molecular weight (most abundant/longest-lived isotopes) = 376.195 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -50.07160 -41.75993 -40.91733 -39.45759 -38.76013 -36.52706 -35.52289 -34.62067 -32.82958 -32.13539 -31.46565 -30.96706 -29.44271 -27.42448 -26.40587 -26.08003 -25.06376 -24.28009 -23.62533 -23.13688 -21.19757 -20.28730 -19.81487 -18.91801 -18.67687 -17.95505 -17.89476 -17.51615 -17.17140 -16.74626 -16.67648 -16.29692 -16.10609 -15.95628 -15.73339 -15.63426 -15.29660 -15.11877 -14.77935 -14.68974 -14.49845 -14.29795 -14.14685 -13.92554 -13.85644 -13.82928 -13.50272 -13.35686 -13.26418 -13.16041 -13.12302 -12.90891 -12.73084 -12.59454 -12.44070 -12.27474 -12.16830 -12.04577 -11.77906 -11.69458 -11.63940 -11.42855 -10.64709 -10.63030 -10.33056 -10.26416 -9.89162 -9.39079 -9.14819 -8.20780 -6.35764 -0.60437 0.14427 1.19273 1.36997 1.41721 1.48983 1.89372 2.27371 2.41579 2.53451 2.70216 3.06707 3.08436 3.20208 3.57707 3.65361 3.72763 3.80136 3.85079 3.97979 4.01567 4.07797 4.12023 4.14600 4.28179 4.32941 4.39736 4.43859 4.60748 4.62420 4.69633 4.74378 4.76869 4.77381 4.81857 4.83755 4.95066 4.95320 4.98535 5.01736 5.03658 5.05013 5.13376 5.15068 5.16772 5.24051 5.25729 5.45393 5.58301 5.69020 5.86319 6.00038 6.08119 6.22388 6.40069 6.72399 6.85193 7.30732 7.57124 8.86029 Molecular weight = 376.19amu Principal moments of inertia in cm(-1) A = 0.008082 B = 0.002493 C = 0.002111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3463.704944 B =11227.661150 C =13259.608051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.077 3.923 3 H 0.128 0.872 4 C 0.501 3.499 5 O -0.581 6.581 6 N -0.611 5.611 7 C 0.077 3.923 8 C 0.262 3.738 9 C -0.539 4.539 10 H 0.053 0.947 11 C 0.006 3.994 12 N -0.931 5.931 13 Si 0.968 3.032 14 H -0.259 1.259 15 H -0.279 1.279 16 H -0.277 1.277 17 N -0.532 5.532 18 C 0.048 3.952 19 C -0.108 4.108 20 C -0.100 4.100 21 C -0.125 4.125 22 H 0.106 0.894 23 C 0.409 3.591 24 O -0.485 6.485 25 C -0.194 4.194 26 C -0.036 4.036 27 C -0.163 4.163 28 C 0.120 3.880 29 F -0.138 7.138 30 C -0.166 4.166 31 C -0.042 4.042 32 C 0.073 3.927 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.021 0.979 40 H -0.007 1.007 41 H 0.266 0.734 42 H 0.045 0.955 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.092 0.908 47 H 0.063 0.937 48 H 0.163 0.837 49 H 0.166 0.834 50 H 0.160 0.840 51 H 0.142 0.858 52 H 0.052 0.948 53 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.174 1.534 -25.824 26.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.035 4.035 3 H 0.145 0.855 4 C 0.289 3.711 5 O -0.460 6.460 6 N -0.344 5.344 7 C -0.065 4.065 8 C 0.140 3.860 9 C -0.577 4.577 10 H 0.072 0.928 11 C -0.193 4.193 12 N -0.571 5.571 13 Si 0.792 3.208 14 H -0.183 1.183 15 H -0.205 1.205 16 H -0.202 1.202 17 N -0.256 5.256 18 C -0.079 4.079 19 C -0.146 4.146 20 C -0.138 4.138 21 C -0.144 4.144 22 H 0.124 0.876 23 C 0.288 3.712 24 O -0.362 6.362 25 C -0.195 4.195 26 C -0.054 4.054 27 C -0.182 4.182 28 C 0.101 3.899 29 F -0.116 7.116 30 C -0.184 4.184 31 C -0.060 4.060 32 C -0.055 4.055 33 H 0.061 0.939 34 H 0.099 0.901 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.112 0.888 39 H 0.039 0.961 40 H 0.011 0.989 41 H 0.075 0.925 42 H 0.064 0.936 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.119 0.881 46 H 0.111 0.889 47 H 0.082 0.918 48 H 0.181 0.819 49 H 0.183 0.817 50 H 0.178 0.822 51 H 0.160 0.840 52 H 0.071 0.929 53 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -5.023 0.690 -25.495 25.994 hybrid contribution 0.091 -0.587 0.896 1.075 sum -4.932 0.103 -24.599 25.088 Atomic orbital electron populations 1.22328 0.93650 1.02404 1.04733 1.21608 0.95318 0.98593 0.87964 0.85489 1.21201 0.78235 0.86480 0.85142 1.90581 1.48033 1.21486 1.85920 1.48154 1.61269 1.16978 1.07953 1.21981 0.98943 0.81641 1.03897 1.18697 0.93639 0.91444 0.82179 1.21661 0.95633 1.30436 1.09996 0.92828 1.25885 1.03517 0.94536 0.95361 1.70056 1.38544 1.33382 1.15108 0.85462 0.78850 0.79080 0.77393 1.18326 1.20450 1.20247 1.61647 1.57201 1.04054 1.02685 1.22344 1.00067 0.96399 0.89108 1.21578 1.00285 0.95254 0.97453 1.21527 1.01867 0.95989 0.94408 1.21667 1.01809 0.93172 0.97792 0.87616 1.22677 0.87334 0.89246 0.71931 1.90495 1.18820 1.85738 1.41118 1.20631 0.96219 0.95788 1.06888 1.21620 0.92089 0.99592 0.92104 1.21417 1.02564 0.91222 1.02968 1.18255 0.90983 0.84180 0.96513 1.91522 1.80953 1.54405 1.84763 1.21303 0.93016 1.01207 1.02918 1.21383 1.00793 0.90825 0.93045 1.21858 0.95070 0.91037 0.97529 0.93918 0.90134 0.88859 0.91292 0.91538 0.88792 0.96100 0.98869 0.92472 0.93638 0.89080 0.90919 0.88099 0.88932 0.91784 0.81926 0.81665 0.82202 0.83989 0.92926 0.94233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.20 71.98 0.59 -3.50 16 2 C 0.08 2.21 1.93 44.17 0.09 2.30 16 3 H 0.13 2.94 6.23 -2.39 -0.01 2.93 16 4 C 0.50 21.30 6.84 87.66 0.60 21.90 16 5 O -0.58 -30.75 13.86 -3.04 -0.04 -30.79 16 6 N -0.61 -26.38 2.86 -851.10 -2.43 -28.81 16 7 C 0.08 2.30 9.35 127.77 1.19 3.49 16 8 C 0.26 14.50 5.16 85.63 0.44 14.94 16 9 C -0.54 -31.57 9.39 25.60 0.24 -31.33 16 10 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 11 C 0.01 0.33 5.46 84.65 0.46 0.79 16 12 N -0.93 -57.43 13.29 21.45 0.28 -57.14 16 13 Si 0.97 45.41 29.54 68.60 2.03 47.43 16 14 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 15 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 16 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 17 N -0.53 -14.71 4.36 -875.49 -3.82 -18.53 16 18 C 0.05 0.85 5.22 86.33 0.45 1.30 16 19 C -0.11 -1.52 6.09 30.65 0.19 -1.34 16 20 C -0.10 -1.60 5.27 30.67 0.16 -1.44 16 21 C -0.13 -2.95 2.12 -11.49 -0.02 -2.98 16 22 H 0.11 2.50 6.47 -2.39 -0.02 2.49 16 23 C 0.41 10.52 6.17 27.99 0.17 10.69 16 24 O -0.48 -15.36 16.15 -3.01 -0.05 -15.41 16 25 C -0.19 -4.17 5.87 -20.15 -0.12 -4.29 16 26 C -0.04 -0.61 9.36 22.57 0.21 -0.40 16 27 C -0.16 -2.52 10.01 22.27 0.22 -2.30 16 28 C 0.12 2.10 7.31 22.50 0.16 2.26 16 29 F -0.14 -2.54 17.26 44.97 0.78 -1.76 16 30 C -0.17 -2.81 10.01 22.27 0.22 -2.59 16 31 C -0.04 -0.85 9.59 22.57 0.22 -0.63 16 32 C 0.07 2.21 3.06 86.33 0.26 2.48 16 33 H 0.04 1.23 6.44 -2.39 -0.02 1.21 16 34 H 0.08 1.73 6.46 -2.38 -0.02 1.72 16 35 H 0.09 1.64 7.09 -2.39 -0.02 1.63 16 36 H 0.07 1.71 7.44 -2.39 -0.02 1.69 16 37 H 0.07 2.08 8.07 -2.39 -0.02 2.06 16 38 H 0.09 2.07 6.03 -2.38 -0.01 2.05 16 39 H 0.02 1.17 8.07 -2.39 -0.02 1.15 16 40 H -0.01 -0.44 7.42 -2.39 -0.02 -0.46 16 41 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 42 H 0.05 0.73 7.13 -2.39 -0.02 0.71 16 43 H 0.09 1.39 7.95 -2.38 -0.02 1.37 16 44 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 46 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 47 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 48 H 0.16 2.12 6.36 -2.91 -0.02 2.11 16 49 H 0.17 1.76 8.06 -2.91 -0.02 1.74 16 50 H 0.16 1.99 8.06 -2.91 -0.02 1.97 16 51 H 0.14 2.80 7.65 -2.91 -0.02 2.78 16 52 H 0.05 2.13 5.87 -2.39 -0.01 2.12 16 53 H 0.04 1.18 6.27 -2.39 -0.01 1.17 16 Total: -1.00 -81.67 420.80 3.42 -78.24 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.93 Total: 17.40 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: 5.75 Total: 9.37 kcal Atomic # 7 Polarization: -98.52 SS G_CDS: -5.96 Total: -104.48 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -0.09 Total: -46.21 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.78 Total: -1.76 kcal Atomic # 14 Polarization: 45.41 SS G_CDS: 2.03 Total: 47.43 kcal Total: -81.67 3.42 -78.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096414960.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.469 kcal (2) G-P(sol) polarization free energy of solvation -81.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds