Wall clock time and date at job start Tue Mar 31 2020 05:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31549 * 1 3 3 Si 1.86798 * 120.00246 * 2 1 4 4 H 1.48498 * 109.47503 * 240.00347 * 3 2 1 5 5 H 1.48497 * 109.47133 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47355 * 120.00034 * 3 2 1 7 7 C 1.38660 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00407 * 179.97438 * 7 2 1 9 9 O 1.34829 * 119.99845 * 359.97438 * 7 2 1 10 10 C 1.35749 * 117.00185 * 185.05743 * 9 7 2 11 11 C 1.38879 * 120.06806 * 354.46465 * 10 9 7 12 12 C 1.38094 * 119.93275 * 180.02562 * 11 10 9 13 13 C 1.38308 * 120.06852 * 0.02924 * 12 11 10 14 14 C 1.50701 * 119.93088 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46962 * 90.00187 * 14 13 12 16 16 O 1.21269 * 119.99854 * 359.97438 * 15 14 13 17 17 N 1.34773 * 119.99519 * 179.97438 * 15 14 13 18 18 C 1.39444 * 119.99809 * 179.97438 * 17 15 14 19 19 N 1.32360 * 119.69857 * 0.29641 * 18 17 15 20 20 C 1.31915 * 121.64162 * 180.29304 * 19 18 17 21 21 C 1.38111 * 120.86926 * 359.69254 * 20 19 18 22 22 C 1.38786 * 119.31552 * 0.02562 * 21 20 19 23 23 C 1.38471 * 118.48707 * 359.97438 * 22 21 20 24 24 Br 1.89100 * 120.45728 * 180.02562 * 23 22 21 25 25 C 1.38303 * 120.13836 * 0.24956 * 13 12 11 26 26 C 1.38107 * 120.06278 * 359.44892 * 25 13 12 27 27 H 0.97005 * 120.00038 * 359.97438 * 1 2 3 28 28 H 1.08006 * 120.03423 * 0.02562 * 11 10 9 29 29 H 1.08004 * 119.96830 * 180.02562 * 12 11 10 30 30 H 1.08995 * 109.46960 * 329.99868 * 14 13 12 31 31 H 1.08995 * 109.46984 * 209.99889 * 14 13 12 32 32 H 0.96997 * 120.00407 * 0.02562 * 17 15 14 33 33 H 1.08003 * 119.56318 * 179.72473 * 20 19 18 34 34 H 1.08003 * 120.33985 * 180.02562 * 21 20 19 35 35 H 1.08002 * 120.75487 * 180.02562 * 22 21 20 36 36 H 1.07991 * 119.96413 * 179.70799 * 25 13 12 37 37 H 1.08001 * 120.03279 * 180.27328 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6964 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1033 1.6964 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0005 10 6 2.0699 -3.5046 0.1055 11 6 3.4571 -3.4396 0.0921 12 6 4.2023 -4.5972 0.1996 13 6 3.5686 -5.8206 0.3201 14 6 4.3849 -7.0820 0.4367 15 6 4.6642 -7.3670 1.8899 16 8 4.2425 -6.6192 2.7464 17 7 5.3828 -8.4529 2.2376 18 6 5.6418 -8.7164 3.5822 19 7 5.1740 -7.8993 4.5124 20 6 5.4007 -8.1086 5.7950 21 6 6.1348 -9.2001 6.2159 22 6 6.6386 -10.0848 5.2727 23 6 6.3841 -9.8386 3.9340 24 35 7.0432 -11.0081 2.6021 25 6 2.1873 -5.8893 0.3280 26 6 1.4366 -4.7346 0.2271 27 1 -0.4850 0.8401 0.0004 28 1 3.9526 -2.4845 -0.0024 29 1 5.2812 -4.5472 0.1896 30 1 5.3271 -6.9556 -0.0965 31 1 3.8310 -7.9146 0.0032 32 1 5.7205 -9.0508 1.5525 33 1 5.0066 -7.4176 6.5255 34 1 6.3149 -9.3635 7.2682 35 1 7.2154 -10.9461 5.5759 36 1 1.6954 -6.8466 0.4175 37 1 0.3579 -4.7884 0.2378 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096449806.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:59 Heat of formation + Delta-G solvation = 20.136067 kcal Electronic energy + Delta-G solvation = -24074.919181 eV Core-core repulsion = 20251.100767 eV Total energy + Delta-G solvation = -3823.818414 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 376.021 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.08941 -39.46959 -38.68609 -36.52992 -35.12650 -33.48608 -32.48424 -31.75946 -30.98161 -30.12074 -29.50191 -26.77067 -25.20048 -24.17585 -23.30570 -21.94321 -21.16202 -20.12023 -18.54822 -17.94494 -17.30353 -16.90981 -16.34815 -15.85041 -15.74804 -15.00781 -14.71953 -14.55733 -14.30279 -14.02915 -13.86908 -13.58599 -13.50469 -13.34108 -12.67785 -12.59232 -12.53293 -11.90374 -11.74107 -11.53853 -11.23671 -11.01985 -10.94984 -10.82911 -10.73739 -10.61343 -10.40963 -10.21836 -9.91173 -9.29679 -9.27470 -8.78509 -8.58572 -8.11659 -7.14114 -6.41235 -3.99751 0.51692 0.85652 1.06965 2.20571 2.28953 2.66301 2.70518 3.15679 3.17752 3.19876 3.47108 4.00197 4.06233 4.28161 4.52465 4.56793 4.68018 4.92193 5.01397 5.11405 5.23559 5.25542 5.34477 5.40502 5.62199 5.63367 5.75210 5.87433 5.87619 6.24960 6.29868 6.44969 6.72329 6.89416 6.96923 7.09412 7.27133 7.39525 7.48349 7.68700 7.86972 8.03940 8.18003 9.04342 9.74775 10.76783 Molecular weight = 376.02amu Principal moments of inertia in cm(-1) A = 0.019741 B = 0.001882 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.039998 B =14874.253198 C =15501.538089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.391 4.391 8 H 0.091 0.909 9 O -0.177 6.177 10 C 0.158 3.842 11 C -0.232 4.232 12 C -0.054 4.054 13 C -0.175 4.175 14 C -0.076 4.076 15 C 0.496 3.504 16 O -0.443 6.443 17 N -0.667 5.667 18 C 0.400 3.600 19 N -0.465 5.465 20 C 0.153 3.847 21 C -0.208 4.208 22 C -0.017 4.017 23 C -0.195 4.195 24 Br -0.038 7.038 25 C -0.057 4.057 26 C -0.191 4.191 27 H 0.270 0.730 28 H 0.127 0.873 29 H 0.104 0.896 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.416 0.584 33 H 0.167 0.833 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.108 0.892 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.665 -25.182 7.614 31.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.498 5.498 2 C -0.165 4.165 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.080 6.080 10 C 0.104 3.896 11 C -0.252 4.252 12 C -0.072 4.072 13 C -0.176 4.176 14 C -0.116 4.116 15 C 0.282 3.718 16 O -0.308 6.308 17 N -0.315 5.315 18 C 0.166 3.834 19 N -0.180 5.180 20 C -0.006 4.006 21 C -0.231 4.231 22 C -0.045 4.045 23 C -0.280 4.280 24 Br 0.046 6.954 25 C -0.076 4.076 26 C -0.210 4.210 27 H 0.080 0.920 28 H 0.144 0.856 29 H 0.122 0.878 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.255 0.745 33 H 0.184 0.816 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.127 0.873 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.587 -24.004 7.325 29.544 hybrid contribution 1.126 -0.054 0.322 1.172 sum 16.713 -24.058 7.647 30.275 Atomic orbital electron populations 1.70029 1.05953 1.27738 1.46082 1.25284 0.95839 0.98815 0.96573 0.85786 0.78701 0.79796 0.79181 1.19516 1.20291 1.19493 1.21284 0.91781 0.80849 1.52841 0.89120 1.83975 1.34363 1.11457 1.78246 1.19385 0.90295 0.88028 0.91870 1.21097 0.93799 0.98750 1.11512 1.20506 0.98049 0.91738 0.96954 1.18572 0.93179 0.92539 1.13310 1.20428 1.01622 0.98549 0.91028 1.21507 0.77702 0.79726 0.92884 1.90856 1.44727 1.44005 1.51260 1.44239 1.54235 1.28584 1.04485 1.18309 0.90019 0.88482 0.86562 1.67986 1.21279 1.27639 1.01129 1.22978 0.91462 0.94559 0.91638 1.22104 1.02834 0.97104 1.01030 1.21354 0.94864 0.98298 0.89976 1.22287 1.10877 0.99545 0.95327 1.96706 1.86429 1.61406 1.50854 1.20399 0.92695 0.96757 0.97727 1.20149 0.99507 0.90253 1.11139 0.91995 0.85565 0.87796 0.88585 0.88543 0.74526 0.81556 0.83829 0.83671 0.87347 0.86512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.75 13.67 55.48 0.76 -24.99 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 20.93 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.39 -11.19 9.49 30.89 0.29 -10.90 16 8 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 9 O -0.18 -5.19 9.76 0.05 0.00 -5.19 16 10 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 11 C -0.23 -5.24 9.17 -39.40 -0.36 -5.61 16 12 C -0.05 -1.03 9.69 -39.61 -0.38 -1.42 16 13 C -0.17 -3.04 4.38 -104.57 -0.46 -3.50 16 14 C -0.08 -0.95 5.83 -29.03 -0.17 -1.12 16 15 C 0.50 7.17 7.79 -10.99 -0.09 7.08 16 16 O -0.44 -8.55 14.28 5.57 0.08 -8.47 16 17 N -0.67 -7.67 5.34 -11.41 -0.06 -7.73 16 18 C 0.40 4.91 7.43 -154.64 -1.15 3.76 16 19 N -0.47 -6.54 7.87 -12.34 -0.10 -6.64 16 20 C 0.15 1.54 11.17 -17.56 -0.20 1.35 16 21 C -0.21 -1.51 10.10 -39.43 -0.40 -1.91 16 22 C -0.02 -0.13 9.93 -39.29 -0.39 -0.52 16 23 C -0.20 -1.83 6.26 -39.18 -0.25 -2.08 16 24 Br -0.04 -0.28 32.15 -68.01 -2.19 -2.47 16 25 C -0.06 -1.07 9.69 -39.61 -0.38 -1.45 16 26 C -0.19 -4.21 9.99 -39.39 -0.39 -4.60 16 27 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.13 2.84 5.64 -52.48 -0.30 2.54 16 29 H 0.10 1.70 8.06 -52.48 -0.42 1.27 16 30 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 31 H 0.10 0.93 8.08 -51.93 -0.42 0.51 16 32 H 0.42 3.50 7.08 -40.82 -0.29 3.22 16 33 H 0.17 1.30 8.06 -52.48 -0.42 0.88 16 34 H 0.14 0.59 8.06 -52.48 -0.42 0.17 16 35 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 36 H 0.11 1.69 8.06 -52.49 -0.42 1.26 16 37 H 0.12 2.48 8.06 -52.49 -0.42 2.05 16 LS Contribution 347.76 15.07 5.24 5.24 Total: -1.00 -35.78 347.76 -9.33 -45.11 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -3.37 Total: 5.45 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -4.68 Total: -16.22 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.60 Total: -39.36 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.08 Total: -13.66 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 35 Polarization: -0.28 SS G_CDS: -2.19 Total: -2.47 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.78 -9.33 -45.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096449806.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.251 kcal (2) G-P(sol) polarization free energy of solvation -35.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds