Wall clock time and date at job start Tue Mar 31 2020 05:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99948 * 2 1 4 4 H 1.48493 * 109.47246 * 269.99849 * 3 2 1 5 5 H 1.48506 * 109.47287 * 30.00090 * 3 2 1 6 6 H 1.48501 * 109.47215 * 149.99651 * 3 2 1 7 7 C 1.37878 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99980 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99926 * 180.02562 * 7 2 1 10 10 N 1.46894 * 109.47031 * 184.69557 * 9 7 2 11 11 C 1.46909 * 110.99966 * 60.51585 * 10 9 7 12 12 C 1.50692 * 109.47238 * 66.04303 * 11 10 9 13 13 C 1.38672 * 120.42057 * 270.25394 * 12 11 10 14 14 C 1.38636 * 118.41813 * 180.24274 * 13 12 11 15 15 C 1.38225 * 119.16038 * 359.75127 * 14 13 12 16 16 N 1.31854 * 120.76892 * 359.97438 * 15 14 13 17 17 C 1.31885 * 121.72050 * 0.02562 * 16 15 14 18 18 C 1.46899 * 111.00148 * 296.55948 * 10 9 7 19 19 C 1.50692 * 109.47006 * 288.52041 * 18 10 9 20 20 C 1.38168 * 119.97834 * 104.72971 * 19 18 10 21 21 C 1.38709 * 119.95510 * 179.74978 * 20 19 18 22 22 O 1.35911 * 120.04218 * 180.22552 * 21 20 19 23 23 C 1.38745 * 119.90727 * 0.54108 * 21 20 19 24 24 C 1.38116 * 119.95526 * 359.70743 * 23 21 20 25 25 C 1.38319 * 119.98158 * 284.99812 * 19 18 10 26 26 Br 1.89106 * 119.95219 * 0.02562 * 25 19 18 27 27 H 0.96996 * 119.99680 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47290 * 64.69576 * 9 7 2 29 29 H 1.09005 * 109.46741 * 304.69594 * 9 7 2 30 30 H 1.08998 * 109.46975 * 306.04319 * 11 10 9 31 31 H 1.09003 * 109.46725 * 186.04811 * 11 10 9 32 32 H 1.07995 * 120.78858 * 359.96836 * 13 12 11 33 33 H 1.08000 * 120.41785 * 179.72581 * 14 13 12 34 34 H 1.08004 * 119.61482 * 180.02562 * 15 14 13 35 35 H 1.08002 * 119.61287 * 179.97438 * 17 16 15 36 36 H 1.09002 * 109.46860 * 48.52085 * 18 10 9 37 37 H 1.09004 * 109.47372 * 168.51784 * 18 10 9 38 38 H 1.07998 * 120.02112 * 359.97111 * 20 19 18 39 39 H 0.96704 * 114.00270 * 270.31368 * 22 21 20 40 40 H 1.07995 * 120.02314 * 179.68233 * 23 21 20 41 41 H 1.08004 * 119.97874 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 4.0013 -2.5744 -0.1118 11 6 3.5408 -3.1959 -1.3607 12 6 4.1737 -2.4938 -2.5343 13 6 3.5509 -1.4009 -3.1180 14 6 4.1676 -0.7895 -4.1987 15 6 5.3766 -1.2830 -4.6520 16 7 5.9427 -2.3212 -4.0688 17 6 5.3849 -2.9274 -3.0389 18 6 3.5982 -3.3729 1.0535 19 6 4.3875 -2.9348 2.2600 20 6 3.7867 -2.1610 3.2343 21 6 4.5122 -1.7623 4.3473 22 8 3.9217 -1.0049 5.3089 23 6 5.8434 -2.1322 4.4742 24 6 6.4417 -2.9015 3.4955 25 6 5.7146 -3.3029 2.3888 26 35 6.5368 -4.3551 1.0497 27 1 -0.4849 0.8400 -0.0004 28 1 3.8746 -0.7546 0.9302 29 1 3.8752 -0.6092 -0.8439 30 1 2.4562 -3.1128 -1.4295 31 1 3.8259 -4.2479 -1.3697 32 1 2.6059 -1.0374 -2.7424 33 1 3.7089 0.0612 -4.6806 34 1 5.8636 -0.8121 -5.4932 35 1 5.8784 -3.7754 -2.5874 36 1 2.5346 -3.2280 1.2428 37 1 3.7917 -4.4273 0.8559 38 1 2.7519 -1.8697 3.1311 39 1 3.9954 -0.0523 5.1599 40 1 6.4115 -1.8185 5.3374 41 1 7.4778 -3.1900 3.5941 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097032526.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:46 Heat of formation + Delta-G solvation = 30.769147 kcal Electronic energy + Delta-G solvation = -26169.273452 eV Core-core repulsion = 22481.749218 eV Total energy + Delta-G solvation = -3687.524234 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 376.053 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.90247 -39.61009 -37.44045 -36.24408 -32.65290 -32.59088 -31.51688 -31.42024 -30.63917 -28.47458 -27.83610 -26.12967 -24.15673 -23.05407 -22.37316 -22.23731 -21.14046 -19.72263 -17.84211 -17.16292 -16.57429 -16.02770 -15.93134 -15.81981 -15.23419 -15.01578 -14.76384 -14.28783 -14.04076 -13.77804 -13.32722 -13.20477 -12.71020 -12.58227 -12.53069 -12.45744 -12.15915 -11.72252 -11.61838 -11.31787 -11.14096 -11.05923 -10.76133 -10.54863 -10.35285 -10.29424 -10.10447 -9.79570 -9.68689 -9.27572 -9.05330 -8.76829 -8.71257 -8.55929 -8.24659 -7.32091 -6.25224 -4.25171 1.17810 1.40380 1.55314 1.76018 1.95697 3.14225 3.24202 3.28389 3.58956 4.20960 4.25854 4.31542 4.79944 4.86488 4.98884 5.05923 5.10083 5.23388 5.36913 5.43471 5.47229 5.56116 5.59028 5.73937 5.80024 5.81419 6.08609 6.13278 6.18145 6.21004 6.31756 6.45551 6.50713 6.61657 6.64517 6.76781 6.85277 6.91177 6.99691 7.15040 7.41272 7.71362 7.87985 7.88684 8.28672 8.34826 8.76597 9.37967 10.86843 Molecular weight = 376.05amu Principal moments of inertia in cm(-1) A = 0.007654 B = 0.005643 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3657.562387 B = 4960.949124 C = 7750.252510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.079 3.921 3 Si 0.867 3.133 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.549 4.549 8 H 0.077 0.923 9 C 0.151 3.849 10 N -0.514 5.514 11 C 0.100 3.900 12 C -0.106 4.106 13 C -0.056 4.056 14 C -0.181 4.181 15 C 0.083 3.917 16 N -0.496 5.496 17 C 0.108 3.892 18 C 0.086 3.914 19 C -0.015 4.015 20 C -0.121 4.121 21 C 0.113 3.887 22 O -0.500 6.500 23 C -0.150 4.150 24 C -0.085 4.085 25 C -0.080 4.080 26 Br -0.046 7.046 27 H 0.264 0.736 28 H 0.026 0.974 29 H 0.028 0.972 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.146 0.854 33 H 0.127 0.873 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.068 0.932 37 H 0.076 0.924 38 H 0.144 0.856 39 H 0.392 0.608 40 H 0.130 0.870 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.490 -5.661 2.425 13.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.125 4.125 3 Si 0.694 3.306 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.190 1.190 7 C -0.588 4.588 8 H 0.095 0.905 9 C 0.024 3.976 10 N -0.237 5.237 11 C -0.028 4.028 12 C -0.108 4.108 13 C -0.082 4.082 14 C -0.201 4.201 15 C -0.074 4.074 16 N -0.204 5.204 17 C -0.049 4.049 18 C -0.042 4.042 19 C -0.018 4.018 20 C -0.140 4.140 21 C 0.068 3.932 22 O -0.310 6.310 23 C -0.170 4.170 24 C -0.105 4.105 25 C -0.160 4.160 26 Br 0.040 6.960 27 H 0.074 0.926 28 H 0.045 0.955 29 H 0.046 0.954 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.164 0.836 33 H 0.145 0.855 34 H 0.163 0.837 35 H 0.165 0.835 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.161 0.839 39 H 0.248 0.752 40 H 0.148 0.852 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 12.810 -6.786 1.831 14.612 hybrid contribution -1.481 2.320 0.535 2.804 sum 11.329 -4.466 2.366 12.405 Atomic orbital electron populations 1.69912 1.06227 1.27057 1.49895 1.24881 0.94515 0.98815 0.94248 0.86981 0.80513 0.84186 0.78936 1.20048 1.21275 1.18986 1.21594 0.90421 0.94515 1.52257 0.90493 1.20246 0.94481 0.85928 0.96963 1.62468 1.58430 1.03540 0.99235 1.20842 0.98802 0.95944 0.87222 1.20784 0.95909 0.96797 0.97331 1.21880 1.00338 0.93100 0.92872 1.22118 0.97531 1.01769 0.98675 1.22568 0.92995 0.93162 0.98712 1.67628 1.34471 1.08878 1.09470 1.22533 0.91953 0.98451 0.91926 1.21058 0.98044 0.96863 0.88228 1.19670 0.92097 0.94538 0.95482 1.21563 1.01863 0.98459 0.92145 1.18537 0.90652 0.95638 0.88357 1.84783 1.78419 1.21622 1.46196 1.21279 0.94231 1.01559 0.99921 1.20871 0.99636 0.97512 0.92513 1.21655 0.95341 1.03638 0.95408 1.96619 1.79738 1.67217 1.52421 0.92583 0.95550 0.95417 0.91795 0.91393 0.83618 0.85516 0.83680 0.83476 0.91404 0.90604 0.83863 0.75219 0.85237 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.96 13.96 55.43 0.77 -24.19 16 2 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.87 20.02 27.38 -169.99 -4.65 15.37 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.03 6.68 56.52 0.38 -5.65 16 7 C -0.55 -13.31 7.51 -34.44 -0.26 -13.57 16 8 H 0.08 2.03 6.20 -52.49 -0.33 1.70 16 9 C 0.15 3.23 3.66 -4.98 -0.02 3.22 16 10 N -0.51 -9.37 4.40 -238.97 -1.05 -10.42 16 11 C 0.10 1.71 4.93 -4.98 -0.02 1.69 16 12 C -0.11 -1.81 4.90 -104.48 -0.51 -2.33 16 13 C -0.06 -0.98 8.12 -39.27 -0.32 -1.30 16 14 C -0.18 -2.81 10.11 -39.44 -0.40 -3.21 16 15 C 0.08 1.24 11.18 -17.55 -0.20 1.04 16 16 N -0.50 -8.23 10.36 -13.25 -0.14 -8.37 16 17 C 0.11 1.77 10.86 -17.55 -0.19 1.58 16 18 C 0.09 1.47 4.21 -4.98 -0.02 1.45 16 19 C -0.02 -0.25 4.65 -104.62 -0.49 -0.74 16 20 C -0.12 -2.00 9.01 -39.43 -0.36 -2.36 16 21 C 0.11 1.67 6.70 -39.22 -0.26 1.40 16 22 O -0.50 -6.74 13.50 -19.46 -0.26 -7.00 16 23 C -0.15 -1.96 9.99 -39.44 -0.39 -2.35 16 24 C -0.09 -1.13 9.78 -39.58 -0.39 -1.51 16 25 C -0.08 -1.20 6.22 -39.50 -0.25 -1.45 16 26 Br -0.05 -0.63 31.91 -68.01 -2.17 -2.80 16 27 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 28 H 0.03 0.60 6.28 -51.93 -0.33 0.28 16 29 H 0.03 0.63 5.30 -51.93 -0.28 0.35 16 30 H 0.06 1.23 6.37 -51.93 -0.33 0.90 16 31 H 0.07 1.02 7.82 -51.93 -0.41 0.61 16 32 H 0.15 2.86 7.67 -52.49 -0.40 2.46 16 33 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.15 1.72 8.06 -52.48 -0.42 1.29 16 35 H 0.15 2.16 8.06 -52.49 -0.42 1.74 16 36 H 0.07 1.30 6.15 -51.93 -0.32 0.98 16 37 H 0.08 1.17 7.08 -51.93 -0.37 0.81 16 38 H 0.14 2.57 8.00 -52.49 -0.42 2.15 16 39 H 0.39 3.65 9.06 45.56 0.41 4.06 16 40 H 0.13 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 358.24 15.07 5.40 5.40 Total: -1.00 -28.78 358.24 -10.30 -39.08 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -4.03 Total: 9.43 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -4.17 Total: -16.51 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: -0.41 Total: -42.97 kcal Atomic # 8 Polarization: -6.74 SS G_CDS: -0.26 Total: -7.00 kcal Atomic # 14 Polarization: 20.02 SS G_CDS: -4.65 Total: 15.37 kcal Atomic # 35 Polarization: -0.63 SS G_CDS: -2.17 Total: -2.80 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -28.78 -10.30 -39.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097032526.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.848 kcal (2) G-P(sol) polarization free energy of solvation -28.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds