Wall clock time and date at job start Tue Mar 31 2020 05:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 119.99948 * 2 1 4 4 H 1.48493 * 109.47246 * 269.99849 * 3 2 1 5 5 H 1.48506 * 109.47287 * 30.00090 * 3 2 1 6 6 H 1.48501 * 109.47215 * 149.99651 * 3 2 1 7 7 C 1.37878 * 119.99946 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99980 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99926 * 180.02562 * 7 2 1 10 10 N 1.46894 * 109.47031 * 184.69557 * 9 7 2 11 11 C 1.46909 * 110.99966 * 60.51585 * 10 9 7 12 12 C 1.50692 * 109.47238 * 66.04303 * 11 10 9 13 13 C 1.38672 * 120.42057 * 270.25394 * 12 11 10 14 14 C 1.38636 * 118.41813 * 180.24274 * 13 12 11 15 15 C 1.38225 * 119.16038 * 359.75127 * 14 13 12 16 16 N 1.31854 * 120.76892 * 359.97438 * 15 14 13 17 17 C 1.31885 * 121.72050 * 0.02562 * 16 15 14 18 18 C 1.46899 * 111.00148 * 296.55948 * 10 9 7 19 19 C 1.50692 * 109.47006 * 288.52041 * 18 10 9 20 20 C 1.38168 * 119.97834 * 104.72971 * 19 18 10 21 21 C 1.38709 * 119.95510 * 179.74978 * 20 19 18 22 22 O 1.35911 * 120.04218 * 180.22552 * 21 20 19 23 23 C 1.38745 * 119.90727 * 0.54108 * 21 20 19 24 24 C 1.38116 * 119.95526 * 359.70743 * 23 21 20 25 25 C 1.38319 * 119.98158 * 284.99812 * 19 18 10 26 26 Br 1.89106 * 119.95219 * 0.02562 * 25 19 18 27 27 H 0.96996 * 119.99680 * 0.02562 * 1 2 3 28 28 H 1.08997 * 109.47290 * 64.69576 * 9 7 2 29 29 H 1.09005 * 109.46741 * 304.69594 * 9 7 2 30 30 H 1.08998 * 109.46975 * 306.04319 * 11 10 9 31 31 H 1.09003 * 109.46725 * 186.04811 * 11 10 9 32 32 H 1.07995 * 120.78858 * 359.96836 * 13 12 11 33 33 H 1.08000 * 120.41785 * 179.72581 * 14 13 12 34 34 H 1.08004 * 119.61482 * 180.02562 * 15 14 13 35 35 H 1.08002 * 119.61287 * 179.97438 * 17 16 15 36 36 H 1.09002 * 109.46860 * 48.52085 * 18 10 9 37 37 H 1.09004 * 109.47372 * 168.51784 * 18 10 9 38 38 H 1.07998 * 120.02112 * 359.97111 * 20 19 18 39 39 H 0.96704 * 114.00270 * 270.31368 * 22 21 20 40 40 H 1.07995 * 120.02314 * 179.68233 * 23 21 20 41 41 H 1.08004 * 119.97874 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1941 0.0011 10 7 4.0013 -2.5744 -0.1118 11 6 3.5408 -3.1959 -1.3607 12 6 4.1737 -2.4938 -2.5343 13 6 3.5509 -1.4009 -3.1180 14 6 4.1676 -0.7895 -4.1987 15 6 5.3766 -1.2830 -4.6520 16 7 5.9427 -2.3212 -4.0688 17 6 5.3849 -2.9274 -3.0389 18 6 3.5982 -3.3729 1.0535 19 6 4.3875 -2.9348 2.2600 20 6 3.7867 -2.1610 3.2343 21 6 4.5122 -1.7623 4.3473 22 8 3.9217 -1.0049 5.3089 23 6 5.8434 -2.1322 4.4742 24 6 6.4417 -2.9015 3.4955 25 6 5.7146 -3.3029 2.3888 26 35 6.5368 -4.3551 1.0497 27 1 -0.4849 0.8400 -0.0004 28 1 3.8746 -0.7546 0.9302 29 1 3.8752 -0.6092 -0.8439 30 1 2.4562 -3.1128 -1.4295 31 1 3.8259 -4.2479 -1.3697 32 1 2.6059 -1.0374 -2.7424 33 1 3.7089 0.0612 -4.6806 34 1 5.8636 -0.8121 -5.4932 35 1 5.8784 -3.7754 -2.5874 36 1 2.5346 -3.2280 1.2428 37 1 3.7917 -4.4273 0.8559 38 1 2.7519 -1.8697 3.1311 39 1 3.9954 -0.0523 5.1599 40 1 6.4115 -1.8185 5.3374 41 1 7.4778 -3.1900 3.5941 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097032526.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:45 Heat of formation + Delta-G solvation = 12.277585 kcal Electronic energy + Delta-G solvation = -26170.075307 eV Core-core repulsion = 22481.749218 eV Total energy + Delta-G solvation = -3688.326089 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 376.053 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.17637 -40.78747 -38.78891 -37.47914 -34.60792 -33.86842 -32.76565 -32.56426 -31.97804 -29.92855 -29.28865 -27.42060 -25.79940 -24.34404 -23.74438 -23.46404 -22.35507 -21.27601 -19.24156 -18.81234 -17.83696 -17.26564 -17.14548 -17.05227 -16.63462 -16.51138 -16.05104 -15.88404 -15.58626 -14.93541 -14.60162 -14.52145 -14.41479 -13.98337 -13.86655 -13.66838 -13.41606 -13.28464 -13.01117 -12.83978 -12.74764 -12.50281 -12.25741 -12.09747 -11.86429 -11.68967 -11.49454 -11.45378 -10.90307 -10.79358 -10.59224 -10.33691 -9.95350 -9.80414 -9.37697 -8.93080 -8.30111 -6.31574 0.04312 0.22080 0.33553 0.44101 0.82483 1.27848 1.32700 1.41095 2.30332 2.45588 2.93316 3.06128 3.24410 3.49487 3.65664 3.80921 3.86809 3.98928 4.11252 4.20970 4.22806 4.25416 4.37980 4.51716 4.54091 4.60038 4.80144 4.85983 4.91158 4.97025 5.03780 5.04825 5.12272 5.13798 5.33642 5.34951 5.38558 5.49690 5.58823 5.72154 5.87926 6.10862 6.33454 6.33853 6.74356 6.76906 7.09777 7.34156 8.85253 Molecular weight = 376.05amu Principal moments of inertia in cm(-1) A = 0.007654 B = 0.005643 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3657.562387 B = 4960.949124 C = 7750.252510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.028 3.972 3 Si 0.921 3.079 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.256 1.256 7 C -0.527 4.527 8 H 0.045 0.955 9 C 0.168 3.832 10 N -0.503 5.503 11 C 0.105 3.895 12 C -0.117 4.117 13 C -0.076 4.076 14 C -0.180 4.180 15 C 0.089 3.911 16 N -0.507 5.507 17 C 0.111 3.889 18 C 0.092 3.908 19 C -0.032 4.032 20 C -0.145 4.145 21 C 0.112 3.888 22 O -0.508 6.508 23 C -0.140 4.140 24 C -0.077 4.077 25 C -0.091 4.091 26 Br -0.035 7.035 27 H 0.263 0.737 28 H 0.017 0.983 29 H 0.023 0.977 30 H 0.034 0.966 31 H 0.093 0.907 32 H 0.117 0.883 33 H 0.148 0.852 34 H 0.183 0.817 35 H 0.164 0.836 36 H 0.036 0.964 37 H 0.093 0.907 38 H 0.114 0.886 39 H 0.409 0.591 40 H 0.162 0.838 41 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.991 -5.425 2.372 16.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.171 4.171 3 Si 0.746 3.254 4 H -0.193 1.193 5 H -0.214 1.214 6 H -0.180 1.180 7 C -0.566 4.566 8 H 0.063 0.937 9 C 0.040 3.960 10 N -0.225 5.225 11 C -0.023 4.023 12 C -0.119 4.119 13 C -0.103 4.103 14 C -0.199 4.199 15 C -0.068 4.068 16 N -0.215 5.215 17 C -0.046 4.046 18 C -0.036 4.036 19 C -0.035 4.035 20 C -0.165 4.165 21 C 0.067 3.933 22 O -0.321 6.321 23 C -0.159 4.159 24 C -0.096 4.096 25 C -0.171 4.171 26 Br 0.051 6.949 27 H 0.072 0.928 28 H 0.036 0.964 29 H 0.041 0.959 30 H 0.052 0.948 31 H 0.111 0.889 32 H 0.135 0.865 33 H 0.166 0.834 34 H 0.199 0.801 35 H 0.181 0.819 36 H 0.054 0.946 37 H 0.111 0.889 38 H 0.132 0.868 39 H 0.269 0.731 40 H 0.180 0.820 41 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 16.329 -6.551 1.777 17.684 hybrid contribution -2.568 2.166 0.550 3.404 sum 13.761 -4.385 2.327 14.629 Atomic orbital electron populations 1.70044 1.07871 1.27689 1.52448 1.25561 0.95033 1.02013 0.94464 0.86099 0.79559 0.80478 0.79237 1.19263 1.21376 1.18020 1.21693 0.91961 0.93016 1.49903 0.93709 1.19939 0.92048 0.87994 0.95987 1.62475 1.57657 1.02286 1.00126 1.20822 0.97079 0.97399 0.87024 1.20743 0.96641 0.97065 0.97483 1.21778 0.99818 0.94205 0.94456 1.22356 0.97724 1.02092 0.97764 1.23137 0.92455 0.92292 0.98956 1.67713 1.34741 1.09497 1.09588 1.22709 0.91349 0.98731 0.91820 1.20991 0.96481 0.97646 0.88436 1.19560 0.93052 0.95738 0.95107 1.21452 1.01009 1.00146 0.93917 1.18625 0.91321 0.95649 0.87689 1.84733 1.78587 1.23078 1.45695 1.21589 0.93315 1.00355 1.00646 1.21244 1.00775 0.96230 0.91399 1.21788 0.94781 1.03985 0.96514 1.96616 1.79185 1.66866 1.52227 0.92752 0.96446 0.95910 0.94755 0.88884 0.86532 0.83383 0.80055 0.81886 0.94563 0.88899 0.86762 0.73145 0.82032 0.82185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.05 13.96 21.45 0.30 -54.75 16 2 C 0.03 1.51 5.47 84.65 0.46 1.97 16 3 Si 0.92 41.97 27.38 68.60 1.88 43.85 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 5 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 6 H -0.26 -11.20 6.68 99.48 0.66 -10.53 16 7 C -0.53 -26.91 7.51 25.60 0.19 -26.71 16 8 H 0.04 2.55 6.20 -2.91 -0.02 2.53 16 9 C 0.17 7.37 3.66 85.56 0.31 7.69 16 10 N -0.50 -18.59 4.40 -909.96 -4.00 -22.59 16 11 C 0.10 3.66 4.93 85.55 0.42 4.08 16 12 C -0.12 -3.97 4.90 -19.78 -0.10 -4.07 16 13 C -0.08 -2.70 8.12 22.47 0.18 -2.52 16 14 C -0.18 -5.29 10.11 22.36 0.23 -5.06 16 15 C 0.09 2.40 11.18 84.69 0.95 3.34 16 16 N -0.51 -15.51 10.36 -195.83 -2.03 -17.54 16 17 C 0.11 3.41 10.86 84.67 0.92 4.33 16 18 C 0.09 3.25 4.21 85.55 0.36 3.61 16 19 C -0.03 -1.06 4.65 -19.86 -0.09 -1.15 16 20 C -0.15 -4.95 9.01 22.37 0.20 -4.74 16 21 C 0.11 3.18 6.70 22.50 0.15 3.34 16 22 O -0.51 -13.12 13.50 -92.54 -1.25 -14.37 16 23 C -0.14 -3.21 9.99 22.36 0.22 -2.99 16 24 C -0.08 -1.79 9.78 22.27 0.22 -1.57 16 25 C -0.09 -2.56 6.22 22.32 0.14 -2.42 16 26 Br -0.03 -0.88 31.91 -20.37 -0.65 -1.53 16 27 H 0.26 14.67 8.31 -92.71 -0.77 13.90 16 28 H 0.02 0.81 6.28 -2.39 -0.02 0.79 16 29 H 0.02 1.04 5.30 -2.38 -0.01 1.03 16 30 H 0.03 1.40 6.37 -2.39 -0.02 1.39 16 31 H 0.09 2.74 7.82 -2.39 -0.02 2.72 16 32 H 0.12 4.81 7.67 -2.91 -0.02 4.79 16 33 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 34 H 0.18 3.52 8.06 -2.91 -0.02 3.50 16 35 H 0.16 4.39 8.06 -2.91 -0.02 4.37 16 36 H 0.04 1.50 6.15 -2.39 -0.01 1.49 16 37 H 0.09 2.89 7.08 -2.39 -0.02 2.88 16 38 H 0.11 4.45 8.00 -2.91 -0.02 4.43 16 39 H 0.41 7.09 9.06 -74.05 -0.67 6.42 16 40 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 41 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -63.95 358.24 -0.62 -64.57 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: 0.36 Total: 25.23 kcal Atomic # 6 Polarization: -27.65 SS G_CDS: 4.77 Total: -22.88 kcal Atomic # 7 Polarization: -89.14 SS G_CDS: -5.73 Total: -94.87 kcal Atomic # 8 Polarization: -13.12 SS G_CDS: -1.25 Total: -14.37 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 1.88 Total: 43.85 kcal Atomic # 35 Polarization: -0.88 SS G_CDS: -0.65 Total: -1.53 kcal Total: -63.95 -0.62 -64.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097032526.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.844 kcal (2) G-P(sol) polarization free energy of solvation -63.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds