Wall clock time and date at job start Tue Mar 31 2020 05:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.36014 * 116.99807 * 179.97438 * 11 10 9 13 13 C 1.38703 * 120.49353 * 0.02562 * 12 11 10 14 14 C 1.38852 * 118.45415 * 179.97438 * 13 12 11 15 15 C 1.38004 * 119.37259 * 359.97438 * 14 13 12 16 16 N 1.32027 * 120.95290 * 0.02562 * 15 14 13 17 17 C 1.32294 * 121.67341 * 359.70532 * 16 15 14 18 18 N 1.39247 * 119.73132 * 180.31225 * 17 16 15 19 19 C 1.46500 * 120.00183 * 0.26612 * 18 17 16 20 20 C 1.50705 * 109.47278 * 180.02562 * 19 18 17 21 21 C 1.38238 * 119.98677 * 269.72213 * 20 19 18 22 22 C 1.38213 * 120.01203 * 179.76546 * 21 20 19 23 23 C 1.38331 * 119.98376 * 0.51221 * 22 21 20 24 24 Br 1.89104 * 120.00625 * 179.72254 * 23 22 21 25 25 C 1.38323 * 119.98342 * 359.74027 * 23 22 21 26 26 C 1.38213 * 119.98561 * 0.02562 * 25 23 22 27 27 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 29 29 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 30 30 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 31 31 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 32 32 H 1.07996 * 120.77246 * 359.97438 * 13 12 11 33 33 H 1.08008 * 120.31380 * 180.02562 * 14 13 12 34 34 H 1.08004 * 119.52510 * 179.97438 * 15 14 13 35 35 H 0.96999 * 119.99870 * 180.26717 * 18 17 16 36 36 H 1.08998 * 109.46774 * 300.00231 * 19 18 17 37 37 H 1.08998 * 109.46969 * 59.99770 * 19 18 17 38 38 H 1.08009 * 119.99496 * 0.02562 * 21 20 19 39 39 H 1.07997 * 120.01314 * 180.23437 * 22 21 20 40 40 H 1.08002 * 120.00511 * 179.97438 * 25 23 22 41 41 H 1.08002 * 119.99238 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.2717 -6.0403 -0.0004 13 6 3.6574 -5.9796 -0.0009 14 6 4.3718 -7.1703 -0.0008 15 6 3.6888 -8.3695 0.0003 16 7 2.3688 -8.3992 0.0008 17 6 1.6491 -7.2892 0.0060 18 7 0.2588 -7.3676 0.0128 19 6 -0.4010 -8.6756 0.0201 20 6 -1.8959 -8.4842 0.0260 21 6 -2.5767 -8.3981 1.2260 22 6 -3.9470 -8.2177 1.2320 23 6 -4.6385 -8.1338 0.0369 24 35 -6.5143 -7.8948 0.0444 25 6 -3.9575 -8.2252 -1.1637 26 6 -2.5865 -8.4008 -1.1685 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5568 -0.8902 29 1 0.6248 -2.5571 0.8897 30 1 2.8721 -3.6043 -0.8905 31 1 2.8721 -3.6042 0.8895 32 1 4.1688 -5.0284 -0.0013 33 1 5.4518 -7.1581 -0.0007 34 1 4.2420 -9.2971 -0.0001 35 1 -0.2727 -6.5563 0.0128 36 1 -0.1101 -9.2342 -0.8694 37 1 -0.1016 -9.2286 0.9104 38 1 -2.0372 -8.4677 2.1591 39 1 -4.4784 -8.1466 2.1695 40 1 -4.4970 -8.1602 -2.0970 41 1 -2.0548 -8.4726 -2.1058 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097094789.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:48 Heat of formation + Delta-G solvation = 19.800905 kcal Electronic energy + Delta-G solvation = -24247.796644 eV Core-core repulsion = 20559.796791 eV Total energy + Delta-G solvation = -3687.999853 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 376.053 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.40962 -39.64026 -37.71727 -35.86737 -33.44910 -32.87821 -31.44162 -31.35714 -30.76599 -29.88372 -28.47802 -25.77624 -25.09860 -23.12282 -22.85342 -22.44028 -21.33560 -20.65839 -18.14131 -17.38824 -16.92271 -16.42570 -16.08581 -15.92314 -15.48820 -15.41242 -14.69363 -14.62427 -14.31099 -14.12580 -13.81562 -13.78849 -13.41587 -13.05164 -12.90222 -12.75107 -12.36435 -11.90613 -11.83663 -11.53334 -11.38838 -11.07106 -10.99663 -10.95470 -10.62936 -10.54389 -10.19494 -9.96887 -9.75087 -9.48955 -9.30784 -9.30168 -8.93712 -8.90726 -8.48129 -7.16719 -6.13880 -4.18734 0.70702 1.02938 1.35530 1.54118 1.54990 3.10637 3.24873 3.31046 3.33508 3.62587 3.70069 4.07598 4.37440 4.42158 4.46388 4.62155 4.76922 4.99042 5.04588 5.08793 5.20844 5.22685 5.33286 5.41127 5.43192 5.57617 5.67399 5.68975 5.88982 5.90850 5.95906 5.98329 6.18621 6.26363 6.35375 6.49878 6.58507 6.65366 7.17467 7.38258 7.50546 7.58906 7.77941 8.00006 8.19563 8.34494 8.86658 9.45894 10.97543 Molecular weight = 376.05amu Principal moments of inertia in cm(-1) A = 0.006630 B = 0.002370 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4222.297607 B =11811.699069 C =15718.711344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.061 3.939 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.527 4.527 8 H 0.058 0.942 9 C 0.027 3.973 10 C 0.068 3.932 11 O -0.316 6.316 12 C 0.040 3.960 13 C -0.138 4.138 14 C -0.191 4.191 15 C 0.090 3.910 16 N -0.516 5.516 17 C 0.381 3.619 18 N -0.719 5.719 19 C 0.178 3.822 20 C -0.090 4.090 21 C -0.093 4.093 22 C -0.093 4.093 23 C -0.085 4.085 24 Br -0.054 7.054 25 C -0.093 4.093 26 C -0.093 4.093 27 H 0.263 0.737 28 H 0.027 0.973 29 H 0.027 0.973 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.139 0.861 33 H 0.128 0.872 34 H 0.151 0.849 35 H 0.417 0.583 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.134 0.866 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.100 -22.012 0.091 23.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.566 4.566 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.006 4.006 11 O -0.229 6.229 12 C -0.012 4.012 13 C -0.164 4.164 14 C -0.214 4.214 15 C -0.065 4.065 16 N -0.235 5.235 17 C 0.143 3.857 18 N -0.356 5.356 19 C 0.054 3.946 20 C -0.090 4.090 21 C -0.112 4.112 22 C -0.113 4.113 23 C -0.164 4.164 24 Br 0.032 6.968 25 C -0.113 4.113 26 C -0.112 4.112 27 H 0.073 0.927 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.157 0.843 33 H 0.146 0.854 34 H 0.169 0.831 35 H 0.254 0.746 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.152 0.848 39 H 0.152 0.848 40 H 0.152 0.848 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.644 -22.733 0.098 24.321 hybrid contribution 1.359 2.164 -0.014 2.555 sum -7.285 -20.569 0.084 21.821 Atomic orbital electron populations 1.69971 1.06088 1.27008 1.49596 1.24984 0.94905 0.99379 0.94866 0.86492 0.79746 0.82943 0.78241 1.20481 1.21026 1.19763 1.20957 0.93034 0.90197 1.52366 0.92389 1.19105 0.94127 0.88988 0.98776 1.23309 0.97108 0.80657 0.99527 1.86103 1.36013 1.12769 1.88032 1.19513 0.90946 0.87294 1.03479 1.21535 0.92399 1.00063 1.02421 1.21620 1.00780 0.92519 1.06471 1.22104 0.88569 0.97634 0.98153 1.67160 1.08482 1.27770 1.20135 1.17743 0.85487 0.86585 0.95908 1.44365 1.01407 1.08090 1.81759 1.20018 0.85950 0.85831 1.02755 1.20133 0.95842 0.99694 0.93370 1.21149 0.93504 0.98348 0.98213 1.21133 0.94400 0.98798 0.96930 1.21856 0.90674 1.07438 0.96450 1.96735 1.04540 1.96217 1.99322 1.21131 0.94474 0.98804 0.96853 1.21147 0.93430 0.98360 0.98274 0.92685 0.95465 0.95466 0.93241 0.93245 0.84338 0.85379 0.83140 0.74576 0.91056 0.91058 0.84800 0.84819 0.84819 0.84802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.53 -14.44 9.11 -34.44 -0.31 -14.76 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 9 C 0.03 0.69 5.34 -27.88 -0.15 0.55 16 10 C 0.07 1.41 4.70 37.16 0.17 1.58 16 11 O -0.32 -6.15 9.38 -19.79 -0.19 -6.34 16 12 C 0.04 0.68 6.72 -38.92 -0.26 0.42 16 13 C -0.14 -2.08 9.14 -39.18 -0.36 -2.44 16 14 C -0.19 -2.41 10.10 -39.44 -0.40 -2.80 16 15 C 0.09 1.12 11.17 -17.55 -0.20 0.92 16 16 N -0.52 -7.45 9.57 -12.29 -0.12 -7.56 16 17 C 0.38 5.92 7.50 -154.72 -1.16 4.76 16 18 N -0.72 -9.86 5.70 -61.44 -0.35 -10.21 16 19 C 0.18 1.94 5.83 -5.19 -0.03 1.91 16 20 C -0.09 -0.90 5.25 -104.62 -0.55 -1.45 16 21 C -0.09 -0.90 9.70 -39.59 -0.38 -1.28 16 22 C -0.09 -0.90 9.79 -39.56 -0.39 -1.29 16 23 C -0.08 -0.86 6.22 -39.52 -0.25 -1.10 16 24 Br -0.05 -0.51 33.70 -68.01 -2.29 -2.81 16 25 C -0.09 -0.90 9.79 -39.56 -0.39 -1.29 16 26 C -0.09 -0.90 9.70 -39.59 -0.38 -1.28 16 27 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 31 H 0.05 0.98 7.70 -51.93 -0.40 0.58 16 32 H 0.14 2.01 6.44 -52.49 -0.34 1.67 16 33 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 34 H 0.15 1.38 8.06 -52.48 -0.42 0.96 16 35 H 0.42 6.06 7.81 -40.82 -0.32 5.75 16 36 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 37 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 38 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 39 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 40 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 41 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 374.50 15.07 5.64 5.64 Total: -1.00 -30.23 374.50 -11.93 -42.16 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: -5.22 Total: 4.39 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: -5.13 Total: -15.93 kcal Atomic # 7 Polarization: -43.40 SS G_CDS: 0.27 Total: -43.13 kcal Atomic # 8 Polarization: -6.15 SS G_CDS: -0.19 Total: -6.34 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.29 Total: -2.81 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.23 -11.93 -42.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097094789.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.960 kcal (2) G-P(sol) polarization free energy of solvation -30.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds