Wall clock time and date at job start Tue Mar 31 2020 05:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 119.99670 * 2 1 4 4 H 1.48503 * 109.47574 * 269.99934 * 3 2 1 5 5 H 1.48500 * 109.47346 * 30.00046 * 3 2 1 6 6 H 1.48499 * 109.47067 * 149.99696 * 3 2 1 7 7 C 1.37874 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99767 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00270 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.46866 * 180.02562 * 9 7 2 11 11 O 1.42906 * 109.46748 * 179.97438 * 10 9 7 12 12 C 1.36014 * 116.99807 * 179.97438 * 11 10 9 13 13 C 1.38703 * 120.49353 * 0.02562 * 12 11 10 14 14 C 1.38852 * 118.45415 * 179.97438 * 13 12 11 15 15 C 1.38004 * 119.37259 * 359.97438 * 14 13 12 16 16 N 1.32027 * 120.95290 * 0.02562 * 15 14 13 17 17 C 1.32294 * 121.67341 * 359.70532 * 16 15 14 18 18 N 1.39247 * 119.73132 * 180.31225 * 17 16 15 19 19 C 1.46500 * 120.00183 * 0.26612 * 18 17 16 20 20 C 1.50705 * 109.47278 * 180.02562 * 19 18 17 21 21 C 1.38238 * 119.98677 * 269.72213 * 20 19 18 22 22 C 1.38213 * 120.01203 * 179.76546 * 21 20 19 23 23 C 1.38331 * 119.98376 * 0.51221 * 22 21 20 24 24 Br 1.89104 * 120.00625 * 179.72254 * 23 22 21 25 25 C 1.38323 * 119.98342 * 359.74027 * 23 22 21 26 26 C 1.38213 * 119.98561 * 0.02562 * 25 23 22 27 27 H 0.96992 * 120.00032 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47512 * 60.00342 * 9 7 2 29 29 H 1.09000 * 109.47247 * 300.00051 * 9 7 2 30 30 H 1.09000 * 109.47050 * 299.99952 * 10 9 7 31 31 H 1.09001 * 109.46801 * 60.00064 * 10 9 7 32 32 H 1.07996 * 120.77246 * 359.97438 * 13 12 11 33 33 H 1.08008 * 120.31380 * 180.02562 * 14 13 12 34 34 H 1.08004 * 119.52510 * 179.97438 * 15 14 13 35 35 H 0.96999 * 119.99870 * 180.26717 * 18 17 16 36 36 H 1.08998 * 109.46774 * 300.00231 * 19 18 17 37 37 H 1.08998 * 109.46969 * 59.99770 * 19 18 17 38 38 H 1.08009 * 119.99496 * 0.02562 * 21 20 19 39 39 H 1.07997 * 120.01314 * 180.23437 * 22 21 20 40 40 H 1.08002 * 120.00511 * 179.97438 * 25 23 22 41 41 H 1.08002 * 119.99238 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6621 -0.0005 11 8 1.5309 -4.8997 0.0001 12 6 2.2717 -6.0403 -0.0004 13 6 3.6574 -5.9796 -0.0009 14 6 4.3718 -7.1703 -0.0008 15 6 3.6888 -8.3695 0.0003 16 7 2.3688 -8.3992 0.0008 17 6 1.6491 -7.2892 0.0060 18 7 0.2588 -7.3676 0.0128 19 6 -0.4010 -8.6756 0.0201 20 6 -1.8959 -8.4842 0.0260 21 6 -2.5767 -8.3981 1.2260 22 6 -3.9470 -8.2177 1.2320 23 6 -4.6385 -8.1338 0.0369 24 35 -6.5143 -7.8948 0.0444 25 6 -3.9575 -8.2252 -1.1637 26 6 -2.5865 -8.4008 -1.1685 27 1 -0.4850 0.8400 -0.0004 28 1 0.6241 -2.5568 -0.8902 29 1 0.6248 -2.5571 0.8897 30 1 2.8721 -3.6043 -0.8905 31 1 2.8721 -3.6042 0.8895 32 1 4.1688 -5.0284 -0.0013 33 1 5.4518 -7.1581 -0.0007 34 1 4.2420 -9.2971 -0.0001 35 1 -0.2727 -6.5563 0.0128 36 1 -0.1101 -9.2342 -0.8694 37 1 -0.1016 -9.2286 0.9104 38 1 -2.0372 -8.4677 2.1591 39 1 -4.4784 -8.1466 2.1695 40 1 -4.4970 -8.1602 -2.0970 41 1 -2.0548 -8.4726 -2.1058 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097094789.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:48 Heat of formation + Delta-G solvation = 4.643347 kcal Electronic energy + Delta-G solvation = -24248.453925 eV Core-core repulsion = 20559.796791 eV Total energy + Delta-G solvation = -3688.657134 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 376.053 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.55201 -40.44344 -39.07212 -36.83955 -35.47891 -33.75342 -32.76142 -32.12390 -32.10822 -31.12497 -29.52515 -27.17233 -26.47910 -24.24987 -23.87744 -23.58302 -22.46794 -22.00074 -19.44439 -18.67983 -18.06478 -17.82116 -17.40355 -17.05005 -16.64349 -16.54239 -16.23566 -15.62836 -15.43095 -15.30057 -14.98265 -14.55030 -14.37677 -14.25974 -14.05150 -13.99890 -13.83959 -13.48346 -13.19232 -12.76984 -12.72741 -12.43246 -12.28627 -12.15383 -11.85251 -11.72793 -11.61312 -11.43191 -11.31402 -11.17920 -10.61968 -10.52820 -10.12883 -10.06044 -9.70754 -8.29353 -8.26507 -6.39802 -0.08562 0.27254 0.40221 0.47393 0.57791 1.41027 1.42671 1.53716 2.18772 2.23924 2.48187 2.72921 2.98371 3.08209 3.55259 3.72103 3.77988 3.90515 4.00444 4.09633 4.21100 4.26899 4.28876 4.31162 4.40273 4.57448 4.62068 4.63552 4.75516 4.78399 4.94997 5.09895 5.11749 5.15007 5.31154 5.33288 5.48125 5.48520 5.59092 5.71008 5.74502 6.04516 6.13020 6.30994 6.63033 6.75092 7.24394 7.30383 8.86226 Molecular weight = 376.05amu Principal moments of inertia in cm(-1) A = 0.006630 B = 0.002370 C = 0.001781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4222.297607 B =11811.699069 C =15718.711344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.973 3.027 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.545 4.545 8 H 0.070 0.930 9 C 0.032 3.968 10 C 0.088 3.912 11 O -0.335 6.335 12 C -0.002 4.002 13 C -0.140 4.140 14 C -0.188 4.188 15 C 0.098 3.902 16 N -0.523 5.523 17 C 0.371 3.629 18 N -0.721 5.721 19 C 0.185 3.815 20 C -0.096 4.096 21 C -0.097 4.097 22 C -0.099 4.099 23 C -0.096 4.096 24 Br -0.051 7.051 25 C -0.099 4.099 26 C -0.097 4.097 27 H 0.266 0.734 28 H -0.002 1.002 29 H -0.002 1.002 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.141 0.859 33 H 0.163 0.837 34 H 0.191 0.809 35 H 0.409 0.591 36 H 0.074 0.926 37 H 0.075 0.925 38 H 0.145 0.855 39 H 0.146 0.854 40 H 0.146 0.854 41 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.016 -22.903 0.094 23.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.797 3.203 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.183 1.183 7 C -0.583 4.583 8 H 0.088 0.912 9 C -0.005 4.005 10 C 0.013 3.987 11 O -0.248 6.248 12 C -0.054 4.054 13 C -0.166 4.166 14 C -0.211 4.211 15 C -0.057 4.057 16 N -0.243 5.243 17 C 0.134 3.866 18 N -0.357 5.357 19 C 0.062 3.938 20 C -0.096 4.096 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.176 4.176 24 Br 0.034 6.966 25 C -0.119 4.119 26 C -0.116 4.116 27 H 0.075 0.925 28 H 0.016 0.984 29 H 0.016 0.984 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.159 0.841 33 H 0.180 0.820 34 H 0.207 0.793 35 H 0.245 0.755 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.163 0.837 39 H 0.164 0.836 40 H 0.164 0.836 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -6.565 -23.661 0.100 24.555 hybrid contribution 0.730 2.279 -0.015 2.393 sum -5.834 -21.382 0.085 22.164 Atomic orbital electron populations 1.70115 1.07975 1.28139 1.50648 1.26001 0.95786 1.03557 0.94226 0.85329 0.78632 0.77764 0.78624 1.19615 1.20772 1.18322 1.21398 0.93810 0.91076 1.52032 0.91179 1.18918 0.94465 0.91254 0.95905 1.22811 0.95393 0.80199 1.00260 1.86018 1.36553 1.13039 1.89239 1.19776 0.91947 0.86636 1.07013 1.21769 0.91808 1.01398 1.01634 1.21984 1.02447 0.91407 1.05218 1.22859 0.88064 0.99298 0.95441 1.67293 1.09526 1.26976 1.20504 1.17912 0.86214 0.86471 0.95973 1.44512 1.01068 1.08766 1.81346 1.20037 0.86210 0.84563 1.02969 1.20128 0.95435 1.00283 0.93796 1.21317 0.93671 0.98050 0.98590 1.21330 0.94538 0.98603 0.97425 1.22034 0.90996 1.07674 0.96866 1.96727 1.04279 1.96225 1.99328 1.21328 0.94617 0.98608 0.97342 1.21314 0.93594 0.98071 0.98656 0.92520 0.98387 0.98385 0.92397 0.92422 0.84135 0.81955 0.79254 0.75477 0.90735 0.90724 0.83743 0.83592 0.83594 0.83759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.96 13.29 21.45 0.28 -55.67 16 2 C 0.00 0.17 5.46 84.65 0.46 0.63 16 3 Si 0.97 43.02 29.54 68.60 2.03 45.05 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 7 C -0.55 -30.26 9.11 25.60 0.23 -30.03 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 9 C 0.03 1.70 5.34 29.85 0.16 1.86 16 10 C 0.09 3.71 4.70 71.98 0.34 4.05 16 11 O -0.33 -13.45 9.38 -93.71 -0.88 -14.33 16 12 C 0.00 -0.08 6.72 22.70 0.15 0.07 16 13 C -0.14 -4.03 9.14 22.53 0.21 -3.82 16 14 C -0.19 -4.15 10.10 22.36 0.23 -3.92 16 15 C 0.10 2.13 11.17 84.61 0.94 3.07 16 16 N -0.52 -14.13 9.57 -192.79 -1.84 -15.97 16 17 C 0.37 11.41 7.50 133.11 1.00 12.41 16 18 N -0.72 -19.98 5.70 -348.30 -1.98 -21.97 16 19 C 0.19 3.95 5.83 85.63 0.50 4.45 16 20 C -0.10 -1.91 5.25 -19.86 -0.10 -2.01 16 21 C -0.10 -1.85 9.70 22.26 0.22 -1.63 16 22 C -0.10 -1.90 9.79 22.29 0.22 -1.68 16 23 C -0.10 -1.93 6.22 22.31 0.14 -1.79 16 24 Br -0.05 -0.96 33.70 -20.37 -0.69 -1.65 16 25 C -0.10 -1.90 9.79 22.28 0.22 -1.68 16 26 C -0.10 -1.85 9.70 22.26 0.22 -1.64 16 27 H 0.27 14.99 8.31 -92.71 -0.77 14.22 16 28 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 30 H 0.06 2.31 7.70 -2.39 -0.02 2.29 16 31 H 0.06 2.30 7.70 -2.39 -0.02 2.28 16 32 H 0.14 3.89 6.44 -2.91 -0.02 3.87 16 33 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 34 H 0.19 2.56 8.06 -2.91 -0.02 2.53 16 35 H 0.41 12.42 7.81 -92.71 -0.72 11.70 16 36 H 0.07 1.54 8.08 -2.39 -0.02 1.52 16 37 H 0.07 1.54 8.08 -2.39 -0.02 1.52 16 38 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 39 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 40 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 41 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -66.17 374.50 2.37 -63.80 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 0.33 Total: 22.40 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: 5.12 Total: -21.66 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -3.54 Total: -93.61 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.88 Total: -14.33 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 35 Polarization: -0.96 SS G_CDS: -0.69 Total: -1.65 kcal Total: -66.17 2.37 -63.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097094789.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.446 kcal (2) G-P(sol) polarization free energy of solvation -66.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds