Wall clock time and date at job start Tue Mar 31 2020 06:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46957 * 2 1 4 4 H 1.08997 * 109.46978 * 55.00566 * 3 2 1 5 5 C 1.50703 * 109.46701 * 175.00099 * 3 2 1 6 6 H 1.08004 * 119.99770 * 120.00179 * 5 3 2 7 7 C 1.37881 * 120.00056 * 299.99805 * 5 3 2 8 8 N 1.31513 * 120.00061 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99811 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47447 * 60.00070 * 9 7 5 11 11 H 1.48501 * 109.47077 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47162 * 299.99822 * 9 7 5 13 13 N 1.46498 * 109.47116 * 294.99987 * 3 2 1 14 14 C 1.34771 * 120.00245 * 85.00194 * 13 3 2 15 15 O 1.21586 * 119.99836 * 359.97438 * 14 13 3 16 16 N 1.34770 * 120.00196 * 180.02562 * 14 13 3 17 17 C 1.39734 * 120.00154 * 174.94207 * 16 14 13 18 18 C 1.39081 * 119.91452 * 326.55125 * 17 16 14 19 19 C 1.37753 * 120.12411 * 180.27667 * 18 17 16 20 20 C 1.39592 * 119.95555 * 0.02562 * 19 18 17 21 21 C 1.47857 * 120.08104 * 180.02562 * 20 19 18 22 22 N 1.31709 * 126.48860 * 132.65200 * 21 20 19 23 23 N 1.28419 * 110.47965 * 179.81547 * 22 21 20 24 24 N 1.28895 * 110.41532 * 0.45904 * 23 22 21 25 25 N 1.35657 * 126.48850 * 312.96319 * 21 20 19 26 26 C 1.46503 * 127.39747 * 359.97438 * 25 21 20 27 27 C 1.53002 * 109.46810 * 123.21312 * 26 25 21 28 28 C 1.52991 * 109.47443 * 243.21118 * 26 25 21 29 29 C 1.39779 * 119.83962 * 0.02562 * 20 19 18 30 30 F 1.35103 * 120.06267 * 180.02562 * 29 20 19 31 31 C 1.38084 * 119.87687 * 359.97438 * 29 20 19 32 32 H 1.08995 * 109.47438 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47380 * 300.00289 * 1 2 3 34 34 H 1.09007 * 109.47260 * 59.99848 * 1 2 3 35 35 H 1.09001 * 109.46856 * 240.00181 * 2 1 3 36 36 H 1.08999 * 109.47335 * 119.99837 * 2 1 3 37 37 H 0.96994 * 120.00055 * 179.97438 * 8 7 5 38 38 H 0.97000 * 120.00022 * 264.99999 * 13 3 2 39 39 H 0.96995 * 120.00229 * 354.93841 * 16 14 13 40 40 H 1.07996 * 119.93976 * 0.27993 * 18 17 16 41 41 H 1.07997 * 120.02692 * 180.02562 * 19 18 17 42 42 H 1.09003 * 109.46724 * 3.21733 * 26 25 21 43 43 H 1.08997 * 109.46770 * 180.02562 * 27 26 25 44 44 H 1.09005 * 109.47240 * 299.99917 * 27 26 25 45 45 H 1.08994 * 109.47030 * 60.00065 * 27 26 25 46 46 H 1.09003 * 109.47300 * 60.00580 * 28 26 25 47 47 H 1.09004 * 109.47403 * 180.02562 * 28 26 25 48 48 H 1.09002 * 109.47146 * 300.00137 * 28 26 25 49 49 H 1.07999 * 119.97919 * 179.97438 * 31 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4994 2.2814 1.3820 11 1 6.3978 0.2166 2.6503 12 1 6.5974 0.1472 0.2348 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3416 2.6319 -0.4321 16 7 0.0784 3.2665 -2.5187 17 6 -1.2191 3.7609 -2.6760 18 6 -2.2883 3.1069 -2.0732 19 6 -3.5698 3.5873 -2.2301 20 6 -3.7961 4.7323 -2.9959 21 6 -5.1704 5.2506 -3.1657 22 7 -5.5582 6.5017 -3.0277 23 7 -6.8186 6.6085 -3.2494 24 7 -7.3248 5.4569 -3.5306 25 7 -6.2717 4.5266 -3.4873 26 6 -6.3472 3.0850 -3.7366 27 6 -7.3662 2.4555 -2.7845 28 6 -6.7812 2.8395 -5.1829 29 6 -2.7204 5.3876 -3.6018 30 9 -2.9342 6.4964 -4.3435 31 6 -1.4386 4.9002 -3.4401 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 3.8293 -0.0618 2.9494 38 1 2.2719 2.1232 -1.9978 39 1 0.7223 3.3567 -3.2385 40 1 -2.1136 2.2209 -1.4810 41 1 -4.3989 3.0785 -1.7610 42 1 -5.3681 2.6357 -3.5697 43 1 -7.4220 1.3828 -2.9697 44 1 -7.0569 2.6303 -1.7540 45 1 -8.3451 2.9048 -2.9513 46 1 -6.0552 3.2879 -5.8613 47 1 -6.8378 1.7668 -5.3683 48 1 -7.7602 3.2888 -5.3497 49 1 -0.6063 5.4050 -3.9078 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097096264.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:20 Heat of formation + Delta-G solvation = 65.274775 kcal Electronic energy + Delta-G solvation = -34297.758894 eV Core-core repulsion = 29598.240843 eV Total energy + Delta-G solvation = -4699.518051 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.176 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.15929 -43.12623 -40.59813 -38.77366 -37.11940 -35.74363 -34.64346 -33.01972 -32.38135 -32.07725 -31.10056 -30.97403 -29.26358 -27.90395 -27.05494 -25.17654 -24.18548 -23.22817 -23.08492 -22.02017 -21.30709 -20.84922 -19.71889 -18.56531 -18.28884 -17.86288 -16.86580 -16.72166 -16.50525 -16.09672 -15.82993 -15.71527 -15.30609 -15.08899 -15.06203 -14.42348 -14.30025 -14.01374 -13.77912 -13.64763 -13.55976 -13.27679 -12.94692 -12.85439 -12.83717 -12.71007 -12.32693 -12.22696 -12.16643 -11.87894 -11.71349 -11.57682 -11.37271 -11.12446 -11.09095 -10.97817 -10.91262 -10.65781 -10.48039 -10.31025 -10.12361 -9.79699 -9.62250 -9.20022 -9.15810 -8.62521 -8.38709 -7.98487 -6.23449 -4.33495 0.26608 0.87675 1.02833 1.53830 2.15461 2.73811 3.09316 3.18335 3.24731 3.25626 3.52606 3.66297 3.77009 3.90136 4.21190 4.22331 4.33344 4.36835 4.53824 4.64076 4.75901 4.84380 4.95363 4.97473 5.08550 5.11136 5.12737 5.13945 5.19065 5.26150 5.50154 5.54625 5.59605 5.62522 5.85413 5.98394 6.03851 6.18504 6.25754 6.31797 6.49619 6.69027 6.77895 6.92616 7.15077 7.18740 7.25505 7.51755 7.69476 7.79717 8.05016 8.30218 8.52884 8.66628 8.98696 9.34171 10.81814 Molecular weight = 376.18amu Principal moments of inertia in cm(-1) A = 0.017403 B = 0.001912 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.511291 B =14644.221030 C =15535.521892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.052 0.948 5 C -0.538 4.538 6 H 0.061 0.939 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.276 1.276 13 N -0.712 5.712 14 C 0.691 3.309 15 O -0.569 6.569 16 N -0.693 5.693 17 C 0.248 3.752 18 C -0.131 4.131 19 C -0.042 4.042 20 C -0.114 4.114 21 C 0.301 3.699 22 N -0.317 5.317 23 N -0.044 5.044 24 N -0.084 5.084 25 N -0.366 5.366 26 C 0.139 3.861 27 C -0.164 4.164 28 C -0.163 4.163 29 C 0.177 3.823 30 F -0.121 7.121 31 C -0.197 4.197 32 H 0.023 0.977 33 H 0.051 0.949 34 H 0.036 0.964 35 H 0.031 0.969 36 H 0.101 0.899 37 H 0.266 0.734 38 H 0.388 0.612 39 H 0.408 0.592 40 H 0.158 0.842 41 H 0.137 0.863 42 H 0.117 0.883 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.075 0.925 46 H 0.064 0.936 47 H 0.086 0.914 48 H 0.073 0.927 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.747 1.118 -14.977 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.168 4.168 3 C 0.184 3.816 4 H 0.070 0.930 5 C -0.576 4.576 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.730 3.270 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.363 5.363 14 C 0.391 3.609 15 O -0.446 6.446 16 N -0.340 5.340 17 C 0.148 3.852 18 C -0.152 4.152 19 C -0.063 4.063 20 C -0.120 4.120 21 C 0.025 3.975 22 N -0.169 5.169 23 N -0.039 5.039 24 N -0.069 5.069 25 N -0.164 5.164 26 C 0.037 3.963 27 C -0.222 4.222 28 C -0.221 4.221 29 C 0.155 3.845 30 F -0.099 7.099 31 C -0.219 4.219 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.119 0.881 37 H 0.076 0.924 38 H 0.220 0.780 39 H 0.244 0.756 40 H 0.176 0.824 41 H 0.155 0.845 42 H 0.135 0.865 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.094 0.906 46 H 0.084 0.916 47 H 0.105 0.895 48 H 0.092 0.908 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -16.338 1.967 -13.872 21.523 hybrid contribution 2.105 -0.515 -0.739 2.289 sum -14.233 1.452 -14.611 20.449 Atomic orbital electron populations 1.21833 0.98366 0.98064 1.01089 1.21967 0.92658 0.99751 1.02439 1.18786 0.94205 0.88917 0.79677 0.93038 1.21154 0.90498 1.39514 1.06479 0.92091 1.24867 0.98709 0.94679 0.95301 1.69866 1.35342 1.37226 1.09327 0.86493 0.84634 0.78372 0.77526 1.20148 1.21079 1.20150 1.45902 1.13181 1.57644 1.19564 1.16111 0.84073 0.78868 0.81800 1.90935 1.51932 1.63967 1.37733 1.43021 1.11355 1.61321 1.18288 1.17372 0.84655 0.90065 0.93148 1.21287 0.89847 1.02253 1.01837 1.20876 0.97802 0.92873 0.94710 1.17302 0.86016 1.00522 1.08199 1.23259 0.90110 0.88070 0.96083 1.74922 1.04960 1.15043 1.21957 1.77988 1.01844 1.14854 1.09179 1.82416 1.09757 0.93225 1.21513 1.52138 1.05702 1.10498 1.48109 1.21853 1.03118 0.73214 0.98078 1.22186 0.99255 1.01797 0.98956 1.22176 1.03145 1.03608 0.93147 1.17058 0.92094 0.83658 0.91734 1.91574 1.95477 1.49360 1.73538 1.20702 0.96036 0.97717 1.07444 0.95815 0.93025 0.94482 0.94968 0.88111 0.92359 0.77989 0.75615 0.82433 0.84527 0.86527 0.89447 0.91476 0.90627 0.91646 0.89505 0.90799 0.83393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 8.51 37.16 0.32 -2.35 16 2 C -0.13 -2.83 5.45 -26.73 -0.15 -2.98 16 3 C 0.29 6.47 2.24 -69.08 -0.15 6.32 16 4 H 0.05 1.38 7.58 -51.93 -0.39 0.99 16 5 C -0.54 -13.10 8.73 -34.44 -0.30 -13.40 16 6 H 0.06 1.41 7.74 -52.48 -0.41 1.01 16 7 C 0.07 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.88 -23.27 11.29 55.43 0.63 -22.64 16 9 Si 0.90 19.52 29.54 -169.99 -5.02 14.50 16 10 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 11 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 12 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 13 N -0.71 -12.58 5.03 -59.81 -0.30 -12.88 16 14 C 0.69 11.44 6.87 -86.93 -0.60 10.84 16 15 O -0.57 -11.27 11.13 5.29 0.06 -11.21 16 16 N -0.69 -8.14 5.34 -14.21 -0.08 -8.21 16 17 C 0.25 2.82 6.28 -83.69 -0.53 2.29 16 18 C -0.13 -1.52 8.64 -39.45 -0.34 -1.86 16 19 C -0.04 -0.42 8.24 -39.25 -0.32 -0.74 16 20 C -0.11 -1.28 5.60 -104.88 -0.59 -1.87 16 21 C 0.30 3.76 7.22 -155.18 -1.12 2.64 16 22 N -0.32 -4.82 12.01 32.31 0.39 -4.43 16 23 N -0.04 -0.66 13.37 60.35 0.81 0.15 16 24 N -0.08 -1.09 13.84 60.35 0.84 -0.26 16 25 N -0.37 -3.90 3.34 -52.35 -0.17 -4.08 16 26 C 0.14 0.92 3.45 -67.93 -0.23 0.69 16 27 C -0.16 -0.89 9.45 37.16 0.35 -0.53 16 28 C -0.16 -0.88 9.51 37.15 0.35 -0.53 16 29 C 0.18 2.01 7.28 -39.06 -0.28 1.72 16 30 F -0.12 -1.54 16.66 2.25 0.04 -1.50 16 31 C -0.20 -1.98 9.92 -39.38 -0.39 -2.37 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.05 1.10 7.84 -51.93 -0.41 0.69 16 34 H 0.04 0.68 5.64 -51.92 -0.29 0.39 16 35 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.10 2.50 5.95 -51.93 -0.31 2.19 16 37 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 38 H 0.39 5.74 8.56 -40.82 -0.35 5.39 16 39 H 0.41 3.39 8.83 -40.82 -0.36 3.03 16 40 H 0.16 2.09 6.38 -52.49 -0.33 1.75 16 41 H 0.14 1.06 7.40 -52.49 -0.39 0.67 16 42 H 0.12 0.63 5.83 -51.93 -0.30 0.32 16 43 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 44 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 49 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 408.79 15.07 6.16 6.16 Total: -1.00 -30.96 408.79 -7.22 -38.18 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -6.48 Total: 6.72 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -4.08 Total: -0.49 kcal Atomic # 7 Polarization: -54.46 SS G_CDS: 2.10 Total: -52.35 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.06 Total: -11.21 kcal Atomic # 9 Polarization: -1.54 SS G_CDS: 0.04 Total: -1.50 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -30.96 -7.22 -38.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096264.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.451 kcal (2) G-P(sol) polarization free energy of solvation -30.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds