Wall clock time and date at job start Tue Mar 31 2020 06:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.46957 * 2 1 4 4 H 1.08997 * 109.46978 * 55.00566 * 3 2 1 5 5 C 1.50703 * 109.46701 * 175.00099 * 3 2 1 6 6 H 1.08004 * 119.99770 * 120.00179 * 5 3 2 7 7 C 1.37881 * 120.00056 * 299.99805 * 5 3 2 8 8 N 1.31513 * 120.00061 * 0.02562 * 7 5 3 9 9 Si 1.86793 * 119.99811 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47447 * 60.00070 * 9 7 5 11 11 H 1.48501 * 109.47077 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47162 * 299.99822 * 9 7 5 13 13 N 1.46498 * 109.47116 * 294.99987 * 3 2 1 14 14 C 1.34771 * 120.00245 * 85.00194 * 13 3 2 15 15 O 1.21586 * 119.99836 * 359.97438 * 14 13 3 16 16 N 1.34770 * 120.00196 * 180.02562 * 14 13 3 17 17 C 1.39734 * 120.00154 * 174.94207 * 16 14 13 18 18 C 1.39081 * 119.91452 * 326.55125 * 17 16 14 19 19 C 1.37753 * 120.12411 * 180.27667 * 18 17 16 20 20 C 1.39592 * 119.95555 * 0.02562 * 19 18 17 21 21 C 1.47857 * 120.08104 * 180.02562 * 20 19 18 22 22 N 1.31709 * 126.48860 * 132.65200 * 21 20 19 23 23 N 1.28419 * 110.47965 * 179.81547 * 22 21 20 24 24 N 1.28895 * 110.41532 * 0.45904 * 23 22 21 25 25 N 1.35657 * 126.48850 * 312.96319 * 21 20 19 26 26 C 1.46503 * 127.39747 * 359.97438 * 25 21 20 27 27 C 1.53002 * 109.46810 * 123.21312 * 26 25 21 28 28 C 1.52991 * 109.47443 * 243.21118 * 26 25 21 29 29 C 1.39779 * 119.83962 * 0.02562 * 20 19 18 30 30 F 1.35103 * 120.06267 * 180.02562 * 29 20 19 31 31 C 1.38084 * 119.87687 * 359.97438 * 29 20 19 32 32 H 1.08995 * 109.47438 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.47380 * 300.00289 * 1 2 3 34 34 H 1.09007 * 109.47260 * 59.99848 * 1 2 3 35 35 H 1.09001 * 109.46856 * 240.00181 * 2 1 3 36 36 H 1.08999 * 109.47335 * 119.99837 * 2 1 3 37 37 H 0.96994 * 120.00055 * 179.97438 * 8 7 5 38 38 H 0.97000 * 120.00022 * 264.99999 * 13 3 2 39 39 H 0.96995 * 120.00229 * 354.93841 * 16 14 13 40 40 H 1.07996 * 119.93976 * 0.27993 * 18 17 16 41 41 H 1.07997 * 120.02692 * 180.02562 * 19 18 17 42 42 H 1.09003 * 109.46724 * 3.21733 * 26 25 21 43 43 H 1.08997 * 109.46770 * 180.02562 * 27 26 25 44 44 H 1.09005 * 109.47240 * 299.99917 * 27 26 25 45 45 H 1.08994 * 109.47030 * 60.00065 * 27 26 25 46 46 H 1.09003 * 109.47300 * 60.00580 * 28 26 25 47 47 H 1.09004 * 109.47403 * 180.02562 * 28 26 25 48 48 H 1.09002 * 109.47146 * 300.00137 * 28 26 25 49 49 H 1.07999 * 119.97919 * 179.97438 * 31 29 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8784 1.2280 8 7 3.4062 0.3366 2.1729 9 14 6.0049 0.8812 1.3817 10 1 6.4994 2.2814 1.3820 11 1 6.3978 0.2166 2.6503 12 1 6.5974 0.1472 0.2348 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6644 -1.3670 15 8 -0.3416 2.6319 -0.4321 16 7 0.0784 3.2665 -2.5187 17 6 -1.2191 3.7609 -2.6760 18 6 -2.2883 3.1069 -2.0732 19 6 -3.5698 3.5873 -2.2301 20 6 -3.7961 4.7323 -2.9959 21 6 -5.1704 5.2506 -3.1657 22 7 -5.5582 6.5017 -3.0277 23 7 -6.8186 6.6085 -3.2494 24 7 -7.3248 5.4569 -3.5306 25 7 -6.2717 4.5266 -3.4873 26 6 -6.3472 3.0850 -3.7366 27 6 -7.3662 2.4555 -2.7845 28 6 -6.7812 2.8395 -5.1829 29 6 -2.7204 5.3876 -3.6018 30 9 -2.9342 6.4964 -4.3435 31 6 -1.4386 4.9002 -3.4401 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 3.8293 -0.0618 2.9494 38 1 2.2719 2.1232 -1.9978 39 1 0.7223 3.3567 -3.2385 40 1 -2.1136 2.2209 -1.4810 41 1 -4.3989 3.0785 -1.7610 42 1 -5.3681 2.6357 -3.5697 43 1 -7.4220 1.3828 -2.9697 44 1 -7.0569 2.6303 -1.7540 45 1 -8.3451 2.9048 -2.9513 46 1 -6.0552 3.2879 -5.8613 47 1 -6.8378 1.7668 -5.3683 48 1 -7.7602 3.2888 -5.3497 49 1 -0.6063 5.4050 -3.9078 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097096264.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:18 Heat of formation + Delta-G solvation = 45.731096 kcal Electronic energy + Delta-G solvation = -34298.606371 eV Core-core repulsion = 29598.240843 eV Total energy + Delta-G solvation = -4700.365528 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.176 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -50.09326 -44.10504 -41.75263 -39.87825 -37.85527 -37.17075 -35.89660 -34.40496 -33.76311 -32.89835 -32.59157 -31.90807 -30.31946 -28.76808 -28.33008 -26.07665 -25.38288 -24.64694 -24.06938 -23.09442 -22.19686 -21.95054 -21.32002 -19.89265 -19.32653 -18.64500 -18.11577 -17.71259 -17.62505 -17.26216 -17.05577 -16.73150 -16.57833 -16.34285 -15.93863 -15.84401 -15.16984 -15.07516 -14.72159 -14.57485 -14.54359 -14.47215 -14.03019 -13.99260 -13.71370 -13.64384 -13.39975 -13.26881 -13.12863 -13.08923 -12.88025 -12.71964 -12.64478 -12.62723 -12.17512 -12.15051 -12.11425 -12.03000 -11.91112 -11.50726 -11.48787 -11.20669 -11.04328 -10.98977 -10.49194 -10.03792 -9.71569 -9.20786 -8.13254 -6.29366 -0.65050 0.02809 0.08040 0.72883 1.12249 1.47867 1.48748 1.55734 1.63289 2.04601 2.44075 2.50534 2.65492 2.97933 3.12284 3.17052 3.40957 3.53382 3.69256 3.73472 3.88214 3.97076 4.05982 4.11717 4.19582 4.25928 4.50283 4.58258 4.60264 4.65653 4.66574 4.70688 4.74941 4.77074 4.82880 4.99995 5.09913 5.11663 5.13033 5.16150 5.25538 5.27198 5.34731 5.51027 5.59033 5.64103 5.73409 5.77769 5.90828 6.21725 6.24909 6.78639 7.22442 7.28921 7.38514 7.68757 8.91486 Molecular weight = 376.18amu Principal moments of inertia in cm(-1) A = 0.017403 B = 0.001912 C = 0.001802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.511291 B =14644.221030 C =15535.521892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.123 4.123 3 C 0.296 3.704 4 H 0.003 0.997 5 C -0.547 4.547 6 H 0.072 0.928 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.965 3.035 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.265 1.265 13 N -0.711 5.711 14 C 0.695 3.305 15 O -0.603 6.603 16 N -0.673 5.673 17 C 0.235 3.765 18 C -0.137 4.137 19 C -0.028 4.028 20 C -0.113 4.113 21 C 0.296 3.704 22 N -0.348 5.348 23 N -0.070 5.070 24 N -0.087 5.087 25 N -0.352 5.352 26 C 0.126 3.874 27 C -0.161 4.161 28 C -0.159 4.159 29 C 0.165 3.835 30 F -0.130 7.130 31 C -0.177 4.177 32 H 0.042 0.958 33 H 0.027 0.973 34 H 0.049 0.951 35 H 0.041 0.959 36 H 0.069 0.931 37 H 0.264 0.736 38 H 0.404 0.596 39 H 0.427 0.573 40 H 0.143 0.857 41 H 0.159 0.841 42 H 0.134 0.866 43 H 0.117 0.883 44 H 0.060 0.940 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.117 0.883 48 H 0.063 0.937 49 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.303 0.189 -16.925 22.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.162 4.162 3 C 0.193 3.807 4 H 0.020 0.980 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.183 4.183 8 N -0.551 5.551 9 Si 0.790 3.210 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.190 1.190 13 N -0.363 5.363 14 C 0.395 3.605 15 O -0.482 6.482 16 N -0.322 5.322 17 C 0.136 3.864 18 C -0.158 4.158 19 C -0.049 4.049 20 C -0.119 4.119 21 C 0.020 3.980 22 N -0.201 5.201 23 N -0.065 5.065 24 N -0.073 5.073 25 N -0.150 5.150 26 C 0.027 3.973 27 C -0.219 4.219 28 C -0.217 4.217 29 C 0.143 3.857 30 F -0.109 7.109 31 C -0.199 4.199 32 H 0.061 0.939 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.239 0.761 39 H 0.266 0.734 40 H 0.161 0.839 41 H 0.177 0.823 42 H 0.152 0.848 43 H 0.135 0.865 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.076 0.924 47 H 0.135 0.865 48 H 0.082 0.918 49 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -15.901 1.050 -15.906 22.515 hybrid contribution 1.866 -0.244 -0.180 1.890 sum -14.035 0.806 -16.086 21.364 Atomic orbital electron populations 1.21660 0.96607 0.99088 1.00497 1.21806 0.94151 0.99000 1.01263 1.18283 0.93252 0.88987 0.80208 0.97956 1.21551 0.91581 1.38814 1.06592 0.90944 1.25681 1.02814 0.94572 0.95192 1.70023 1.36935 1.38291 1.09839 0.85507 0.79723 0.78308 0.77440 1.19881 1.21574 1.18964 1.45457 1.14215 1.57995 1.18602 1.16103 0.83210 0.78647 0.82527 1.90927 1.52753 1.65096 1.39452 1.42587 1.12044 1.60261 1.17297 1.17449 0.84197 0.90759 0.94014 1.21225 0.90620 1.02062 1.01853 1.20967 0.97902 0.92180 0.93802 1.17382 0.85407 1.00750 1.08348 1.23368 0.90864 0.87734 0.96059 1.74817 1.05299 1.16856 1.23120 1.77963 1.02089 1.15837 1.10569 1.82313 1.10570 0.93278 1.21126 1.52443 1.04551 1.11535 1.46493 1.22386 1.04635 0.70962 0.99355 1.22215 0.98116 1.03406 0.98158 1.22196 1.02212 1.05454 0.91852 1.17226 0.92664 0.83655 0.92143 1.91556 1.95564 1.49911 1.73851 1.20784 0.96223 0.96718 1.06136 0.93863 0.95426 0.93194 0.94014 0.91234 0.92676 0.76108 0.73355 0.83884 0.82336 0.84804 0.86485 0.92095 0.91620 0.92431 0.86491 0.91758 0.80894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.72 8.51 71.98 0.61 -4.10 16 2 C -0.12 -5.42 5.45 30.60 0.17 -5.25 16 3 C 0.30 13.55 2.24 44.25 0.10 13.65 16 4 H 0.00 0.14 7.58 -2.39 -0.02 0.12 16 5 C -0.55 -26.50 8.73 25.60 0.22 -26.27 16 6 H 0.07 3.25 7.74 -2.91 -0.02 3.23 16 7 C 0.02 0.90 5.29 84.66 0.45 1.35 16 8 N -0.91 -49.35 11.29 21.45 0.24 -49.11 16 9 Si 0.96 39.77 29.54 68.60 2.03 41.79 16 10 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 11 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 12 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 13 N -0.71 -24.36 5.03 -461.42 -2.32 -26.68 16 14 C 0.69 22.20 6.87 179.06 1.23 23.43 16 15 O -0.60 -23.83 11.13 -3.99 -0.04 -23.87 16 16 N -0.67 -14.28 5.34 -317.15 -1.69 -15.97 16 17 C 0.23 4.83 6.28 38.25 0.24 5.07 16 18 C -0.14 -2.94 8.64 22.36 0.19 -2.74 16 19 C -0.03 -0.50 8.24 22.48 0.19 -0.32 16 20 C -0.11 -2.36 5.60 -20.03 -0.11 -2.47 16 21 C 0.30 7.19 7.22 136.71 0.99 8.17 16 22 N -0.35 -10.64 12.01 -51.70 -0.62 -11.26 16 23 N -0.07 -2.14 13.37 37.02 0.50 -1.65 16 24 N -0.09 -2.25 13.84 37.02 0.51 -1.74 16 25 N -0.35 -7.14 3.34 -319.53 -1.07 -8.21 16 26 C 0.13 1.41 3.45 44.99 0.16 1.57 16 27 C -0.16 -1.38 9.45 71.98 0.68 -0.70 16 28 C -0.16 -1.37 9.51 71.98 0.68 -0.69 16 29 C 0.17 3.48 7.28 22.61 0.16 3.65 16 30 F -0.13 -3.17 16.66 44.97 0.75 -2.42 16 31 C -0.18 -3.12 9.92 22.40 0.22 -2.90 16 32 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.03 1.18 7.84 -2.38 -0.02 1.16 16 34 H 0.05 1.79 5.64 -2.38 -0.01 1.77 16 35 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 3.54 5.95 -2.39 -0.01 3.52 16 37 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 38 H 0.40 11.15 8.56 -92.71 -0.79 10.36 16 39 H 0.43 5.77 8.83 -92.71 -0.82 4.95 16 40 H 0.14 3.63 6.38 -2.91 -0.02 3.61 16 41 H 0.16 2.07 7.40 -2.91 -0.02 2.05 16 42 H 0.13 1.05 5.83 -2.39 -0.01 1.04 16 43 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 45 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.12 0.32 8.14 -2.38 -0.02 0.30 16 48 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -69.76 408.79 3.88 -65.88 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -0.58 Total: 21.80 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: 6.18 Total: 11.45 kcal Atomic # 7 Polarization: -110.18 SS G_CDS: -4.45 Total: -114.63 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.04 Total: -23.87 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.75 Total: -2.42 kcal Atomic # 14 Polarization: 39.77 SS G_CDS: 2.03 Total: 41.79 kcal Total: -69.76 3.88 -65.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096264.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.616 kcal (2) G-P(sol) polarization free energy of solvation -69.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds