Wall clock time and date at job start Tue Mar 31 2020 06:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35701 * 126.23801 * 2 1 4 4 N 1.40764 * 126.06766 * 0.02562 * 3 2 1 5 5 C 1.46499 * 120.00138 * 179.71255 * 4 3 2 6 6 H 1.08997 * 109.46960 * 325.00114 * 5 4 3 7 7 C 1.53000 * 109.47080 * 85.00078 * 5 4 3 8 8 C 1.50702 * 109.47110 * 204.99851 * 5 4 3 9 9 O 1.21288 * 119.99994 * 0.02562 * 8 5 4 10 10 N 1.34772 * 120.00057 * 179.97438 * 8 5 4 11 11 C 1.46502 * 119.99924 * 0.02562 * 10 8 5 12 12 C 1.46498 * 119.99899 * 180.02562 * 10 8 5 13 13 C 1.50701 * 109.47451 * 90.00101 * 12 10 8 14 14 H 1.08001 * 119.99573 * 0.02562 * 13 12 10 15 15 C 1.37873 * 119.99999 * 179.97438 * 13 12 10 16 16 N 1.31514 * 120.00188 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99974 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47166 * 60.00121 * 17 15 13 19 19 H 1.48496 * 109.47266 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46918 * 300.00331 * 17 15 13 21 21 C 1.40290 * 107.87072 * 179.75514 * 3 2 1 22 22 N 1.30893 * 108.40227 * 0.24269 * 21 3 2 23 23 N 1.36237 * 126.23922 * 180.17016 * 2 1 3 24 24 C 1.40151 * 126.08091 * 0.02562 * 23 2 1 25 25 C 1.38865 * 120.06317 * 42.02196 * 24 23 2 26 26 C 1.38106 * 119.96156 * 180.02562 * 25 24 23 27 27 C 1.38290 * 120.07568 * 359.97438 * 26 25 24 28 28 C 1.38373 * 120.12379 * 0.02562 * 27 26 25 29 29 Cl 1.73598 * 119.97987 * 179.97438 * 28 27 26 30 30 C 1.38262 * 120.03950 * 359.75969 * 28 27 26 31 31 H 1.09000 * 109.47062 * 95.02580 * 1 2 3 32 32 H 1.08999 * 109.47168 * 215.02541 * 1 2 3 33 33 H 1.09005 * 109.47119 * 335.02642 * 1 2 3 34 34 H 0.97001 * 119.99392 * 359.71415 * 4 3 2 35 35 H 1.09005 * 109.46796 * 299.99901 * 7 5 4 36 36 H 1.08997 * 109.47194 * 60.00179 * 7 5 4 37 37 H 1.08993 * 109.46849 * 179.97438 * 7 5 4 38 38 H 1.08997 * 109.47261 * 89.99753 * 11 10 8 39 39 H 1.09002 * 109.47057 * 210.00282 * 11 10 8 40 40 H 1.09004 * 109.47203 * 329.99516 * 11 10 8 41 41 H 1.09011 * 109.47041 * 209.99794 * 12 10 8 42 42 H 1.08994 * 109.47455 * 329.99867 * 12 10 8 43 43 H 0.97004 * 120.00025 * 180.02562 * 16 15 13 44 44 H 1.08007 * 125.80072 * 180.22116 * 21 3 2 45 45 H 1.08004 * 120.02677 * 359.97438 * 25 24 23 46 46 H 1.08003 * 119.96219 * 180.02562 * 26 25 24 47 47 H 1.07998 * 119.93447 * 180.02562 * 27 26 25 48 48 H 1.07998 * 120.03906 * 180.25599 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3092 1.0945 0.0000 4 7 1.8814 2.4356 0.0005 5 6 2.8674 3.5190 0.0068 6 1 3.7319 3.2201 0.5995 7 6 3.3100 3.8142 -1.4277 8 6 2.2505 4.7562 0.6067 9 8 1.1005 4.7348 0.9916 10 7 2.9769 5.8861 0.7165 11 6 4.3661 5.9117 0.2521 12 6 2.3773 7.0885 1.3002 13 6 2.6101 7.0939 2.7892 14 1 3.1509 6.2829 3.2540 15 6 2.1334 8.1347 3.5576 16 7 1.4753 9.1225 2.9914 17 14 2.4225 8.1417 5.4031 18 1 3.8823 8.1338 5.6756 19 1 1.8147 9.3605 5.9948 20 1 1.7999 6.9358 6.0063 21 6 3.6406 0.6525 0.0057 22 7 3.6414 -0.6565 0.0038 23 7 2.3124 -1.0988 -0.0033 24 6 1.8868 -2.4341 -0.0077 25 6 0.8251 -2.8232 -0.8139 26 6 0.4071 -4.1394 -0.8163 27 6 1.0449 -5.0706 -0.0171 28 6 2.1031 -4.6866 0.7875 29 17 2.9006 -5.8584 1.7897 30 6 2.5286 -3.3710 0.7904 31 1 -0.3633 -0.0900 -1.0237 32 1 -0.3633 -0.8415 0.5898 33 1 -0.3634 0.9316 0.4339 34 1 0.9336 2.6422 -0.0033 35 1 3.7562 2.9193 -1.8617 36 1 2.4455 4.1131 -2.0205 37 1 4.0432 4.6206 -1.4231 38 1 4.3937 6.2124 -0.7952 39 1 4.9359 6.6234 0.8497 40 1 4.8026 4.9183 0.3565 41 1 2.8344 7.9738 0.8579 42 1 1.3060 7.0943 1.1000 43 1 1.1403 9.8549 3.5321 44 1 4.5163 1.2847 0.0105 45 1 0.3260 -2.0967 -1.4381 46 1 -0.4183 -4.4421 -1.4436 47 1 0.7164 -6.0994 -0.0211 48 1 3.3571 -3.0722 1.4152 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097102916.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:45 Heat of formation + Delta-G solvation = 79.891207 kcal Electronic energy + Delta-G solvation = -31063.360923 eV Core-core repulsion = 26760.520313 eV Total energy + Delta-G solvation = -4302.840611 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.141 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.67618 -39.64911 -39.27556 -36.94283 -35.76925 -34.96683 -33.58020 -32.88275 -32.28188 -31.22997 -30.05249 -28.61869 -27.60900 -26.55415 -26.06897 -24.03487 -23.76948 -23.18847 -22.26093 -20.82401 -20.03827 -18.73055 -17.76254 -17.10029 -16.69890 -16.52536 -16.18415 -15.82559 -15.46541 -15.30796 -14.97131 -14.64877 -14.48105 -14.43603 -14.11713 -13.91309 -13.74872 -13.53473 -13.06399 -13.00376 -12.87732 -12.47608 -12.32630 -12.27162 -12.12082 -12.04956 -12.01225 -11.90404 -11.64219 -11.39720 -11.35013 -11.13296 -10.96281 -10.90989 -10.60457 -10.46041 -10.19502 -9.85956 -9.68831 -9.33591 -8.97315 -8.86138 -8.46530 -7.73402 -7.05821 -6.07746 -4.12692 0.44755 0.66766 1.58215 1.79443 2.20259 2.80791 3.07713 3.28601 3.30497 3.34629 3.38239 3.46902 4.01418 4.28523 4.42057 4.42528 4.55514 4.56975 4.69034 4.80825 4.87922 4.93601 5.06472 5.17062 5.26719 5.27007 5.29430 5.30145 5.36498 5.52725 5.62538 5.68782 5.71927 5.73440 5.77220 5.78625 5.87502 5.89286 6.08947 6.09951 6.25132 6.27606 6.94502 7.01344 7.32734 7.39079 7.45603 7.51689 7.88087 7.98138 8.18616 8.32699 8.83190 8.98440 9.52448 11.00230 Molecular weight = 376.14amu Principal moments of inertia in cm(-1) A = 0.013733 B = 0.001745 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.378223 B =16041.298158 C =16772.254275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.007 4.007 3 C 0.092 3.908 4 N -0.717 5.717 5 C 0.143 3.857 6 H 0.092 0.908 7 C -0.174 4.174 8 C 0.502 3.498 9 O -0.537 6.537 10 N -0.597 5.597 11 C 0.079 3.921 12 C 0.246 3.754 13 C -0.528 4.528 14 H 0.057 0.943 15 C 0.061 3.939 16 N -0.894 5.894 17 Si 0.898 3.102 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.026 3.974 22 N -0.268 5.268 23 N -0.332 5.332 24 C 0.188 3.812 25 C -0.126 4.126 26 C -0.086 4.086 27 C -0.119 4.119 28 C -0.017 4.017 29 Cl -0.062 7.062 30 C -0.109 4.109 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.408 0.592 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.079 0.921 38 H 0.050 0.950 39 H 0.075 0.925 40 H 0.059 0.941 41 H 0.034 0.966 42 H 0.044 0.956 43 H 0.264 0.736 44 H 0.187 0.813 45 H 0.138 0.862 46 H 0.142 0.858 47 H 0.138 0.862 48 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.729 -26.126 -11.313 28.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.132 4.132 3 C -0.016 4.016 4 N -0.355 5.355 5 C 0.033 3.967 6 H 0.110 0.890 7 C -0.233 4.233 8 C 0.287 3.713 9 O -0.414 6.414 10 N -0.328 5.328 11 C -0.065 4.065 12 C 0.127 3.873 13 C -0.567 4.567 14 H 0.075 0.925 15 C -0.141 4.141 16 N -0.533 5.533 17 Si 0.726 3.274 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.202 1.202 21 C -0.164 4.164 22 N -0.086 5.086 23 N -0.114 5.114 24 C 0.095 3.905 25 C -0.146 4.146 26 C -0.105 4.105 27 C -0.138 4.138 28 C -0.044 4.044 29 Cl -0.033 7.033 30 C -0.130 4.130 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.102 0.898 34 H 0.246 0.754 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.069 0.931 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.052 0.948 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.204 0.796 45 H 0.156 0.844 46 H 0.160 0.840 47 H 0.156 0.844 48 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 1.968 -26.978 -10.957 29.185 hybrid contribution -0.338 0.926 1.236 1.581 sum 1.630 -26.052 -9.720 27.854 Atomic orbital electron populations 1.20320 0.87203 1.03887 1.02411 1.20169 0.94002 0.85190 1.13863 1.17363 0.91768 0.85336 1.07156 1.43647 1.08193 0.98878 1.84806 1.20579 0.92142 0.87086 0.96912 0.89044 1.22488 1.02515 1.02646 0.95641 1.20299 0.86838 0.84421 0.79717 1.90658 1.17807 1.83508 1.49471 1.48089 1.11989 1.12997 1.59773 1.21847 0.83787 1.02000 0.98889 1.19313 0.95079 0.79983 0.92945 1.21377 1.36183 1.06708 0.92388 0.92523 1.24931 0.94906 0.95359 0.98882 1.69919 1.37053 1.10313 1.36026 0.86559 0.78389 0.77458 0.85020 1.20214 1.21151 1.20195 1.23732 0.96900 0.91933 1.03796 1.77354 0.96298 1.12070 1.22922 1.45102 1.03877 1.02446 1.60004 1.17083 0.95862 0.80942 0.96580 1.21235 0.97716 0.97195 0.98503 1.20969 0.99541 0.91661 0.98319 1.21130 0.95244 1.00962 0.96493 1.20676 0.96632 0.90187 0.96929 1.98391 1.79315 1.57605 1.67975 1.20893 1.01705 0.90969 0.99388 0.90971 0.91271 0.89817 0.75420 0.91864 0.91988 0.90208 0.93126 0.90638 0.92214 0.94837 0.93798 0.92631 0.79638 0.84419 0.84043 0.84396 0.83979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 8.65 36.01 0.31 -0.45 16 2 C -0.01 -0.09 6.79 -81.54 -0.55 -0.64 16 3 C 0.09 1.21 6.90 -83.89 -0.58 0.64 16 4 N -0.72 -10.11 5.19 -53.44 -0.28 -10.39 16 5 C 0.14 2.02 2.19 -69.08 -0.15 1.87 16 6 H 0.09 1.19 6.42 -51.93 -0.33 0.85 16 7 C -0.17 -1.97 9.14 37.16 0.34 -1.63 16 8 C 0.50 9.84 7.14 -10.99 -0.08 9.77 16 9 O -0.54 -12.83 15.42 5.55 0.09 -12.74 16 10 N -0.60 -11.94 2.86 -182.95 -0.52 -12.46 16 11 C 0.08 1.14 8.80 59.85 0.53 1.66 16 12 C 0.25 6.24 5.16 -5.19 -0.03 6.21 16 13 C -0.53 -14.71 9.39 -34.44 -0.32 -15.04 16 14 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -26.23 13.29 55.43 0.74 -25.50 16 17 Si 0.90 21.73 29.54 -169.99 -5.02 16.71 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 21 C 0.03 0.33 11.15 -17.18 -0.19 0.13 16 22 N -0.27 -3.61 12.40 30.72 0.38 -3.23 16 23 N -0.33 -4.13 3.73 -6.69 -0.02 -4.16 16 24 C 0.19 1.99 6.15 -83.61 -0.51 1.48 16 25 C -0.13 -1.00 8.60 -39.40 -0.34 -1.34 16 26 C -0.09 -0.52 10.04 -39.61 -0.40 -0.92 16 27 C -0.12 -0.79 9.83 -39.51 -0.39 -1.18 16 28 C -0.02 -0.15 6.32 -39.52 -0.25 -0.39 16 29 Cl -0.06 -0.51 28.95 -51.86 -1.50 -2.01 16 30 C -0.11 -1.11 9.62 -39.36 -0.38 -1.49 16 31 H 0.07 0.55 7.63 -51.93 -0.40 0.15 16 32 H 0.07 0.60 7.57 -51.93 -0.39 0.20 16 33 H 0.08 0.84 7.43 -51.93 -0.39 0.46 16 34 H 0.41 6.11 7.05 -40.82 -0.29 5.82 16 35 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.81 4.53 -51.93 -0.24 0.58 16 38 H 0.05 0.61 6.95 -51.93 -0.36 0.25 16 39 H 0.07 1.14 8.07 -51.93 -0.42 0.73 16 40 H 0.06 0.69 6.01 -51.93 -0.31 0.38 16 41 H 0.03 0.86 8.07 -51.92 -0.42 0.44 16 42 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.19 1.84 7.45 -52.48 -0.39 1.45 16 45 H 0.14 0.95 6.66 -52.48 -0.35 0.60 16 46 H 0.14 0.45 8.06 -52.48 -0.42 0.03 16 47 H 0.14 0.63 8.06 -52.49 -0.42 0.21 16 48 H 0.14 1.54 8.06 -52.49 -0.42 1.12 16 LS Contribution 411.87 15.07 6.21 6.21 Total: -1.00 -33.90 411.87 -9.36 -43.25 By element: Atomic # 1 Polarization: 10.33 SS G_CDS: -6.33 Total: 4.00 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: -3.09 Total: 0.32 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: 0.29 Total: -55.73 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.09 Total: -12.74 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.90 -9.36 -43.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097102916.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.143 kcal (2) G-P(sol) polarization free energy of solvation -33.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.252 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds