Wall clock time and date at job start Tue Mar 31 2020 06:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35701 * 126.23801 * 2 1 4 4 N 1.40764 * 126.06766 * 0.02562 * 3 2 1 5 5 C 1.46499 * 120.00138 * 179.71255 * 4 3 2 6 6 H 1.08997 * 109.46960 * 325.00114 * 5 4 3 7 7 C 1.53000 * 109.47080 * 85.00078 * 5 4 3 8 8 C 1.50702 * 109.47110 * 204.99851 * 5 4 3 9 9 O 1.21288 * 119.99994 * 0.02562 * 8 5 4 10 10 N 1.34772 * 120.00057 * 179.97438 * 8 5 4 11 11 C 1.46502 * 119.99924 * 0.02562 * 10 8 5 12 12 C 1.46498 * 119.99899 * 180.02562 * 10 8 5 13 13 C 1.50701 * 109.47451 * 90.00101 * 12 10 8 14 14 H 1.08001 * 119.99573 * 0.02562 * 13 12 10 15 15 C 1.37873 * 119.99999 * 179.97438 * 13 12 10 16 16 N 1.31514 * 120.00188 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99974 * 180.02562 * 15 13 12 18 18 H 1.48503 * 109.47166 * 60.00121 * 17 15 13 19 19 H 1.48496 * 109.47266 * 180.02562 * 17 15 13 20 20 H 1.48508 * 109.46918 * 300.00331 * 17 15 13 21 21 C 1.40290 * 107.87072 * 179.75514 * 3 2 1 22 22 N 1.30893 * 108.40227 * 0.24269 * 21 3 2 23 23 N 1.36237 * 126.23922 * 180.17016 * 2 1 3 24 24 C 1.40151 * 126.08091 * 0.02562 * 23 2 1 25 25 C 1.38865 * 120.06317 * 42.02196 * 24 23 2 26 26 C 1.38106 * 119.96156 * 180.02562 * 25 24 23 27 27 C 1.38290 * 120.07568 * 359.97438 * 26 25 24 28 28 C 1.38373 * 120.12379 * 0.02562 * 27 26 25 29 29 Cl 1.73598 * 119.97987 * 179.97438 * 28 27 26 30 30 C 1.38262 * 120.03950 * 359.75969 * 28 27 26 31 31 H 1.09000 * 109.47062 * 95.02580 * 1 2 3 32 32 H 1.08999 * 109.47168 * 215.02541 * 1 2 3 33 33 H 1.09005 * 109.47119 * 335.02642 * 1 2 3 34 34 H 0.97001 * 119.99392 * 359.71415 * 4 3 2 35 35 H 1.09005 * 109.46796 * 299.99901 * 7 5 4 36 36 H 1.08997 * 109.47194 * 60.00179 * 7 5 4 37 37 H 1.08993 * 109.46849 * 179.97438 * 7 5 4 38 38 H 1.08997 * 109.47261 * 89.99753 * 11 10 8 39 39 H 1.09002 * 109.47057 * 210.00282 * 11 10 8 40 40 H 1.09004 * 109.47203 * 329.99516 * 11 10 8 41 41 H 1.09011 * 109.47041 * 209.99794 * 12 10 8 42 42 H 1.08994 * 109.47455 * 329.99867 * 12 10 8 43 43 H 0.97004 * 120.00025 * 180.02562 * 16 15 13 44 44 H 1.08007 * 125.80072 * 180.22116 * 21 3 2 45 45 H 1.08004 * 120.02677 * 359.97438 * 25 24 23 46 46 H 1.08003 * 119.96219 * 180.02562 * 26 25 24 47 47 H 1.07998 * 119.93447 * 180.02562 * 27 26 25 48 48 H 1.07998 * 120.03906 * 180.25599 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3092 1.0945 0.0000 4 7 1.8814 2.4356 0.0005 5 6 2.8674 3.5190 0.0068 6 1 3.7319 3.2201 0.5995 7 6 3.3100 3.8142 -1.4277 8 6 2.2505 4.7562 0.6067 9 8 1.1005 4.7348 0.9916 10 7 2.9769 5.8861 0.7165 11 6 4.3661 5.9117 0.2521 12 6 2.3773 7.0885 1.3002 13 6 2.6101 7.0939 2.7892 14 1 3.1509 6.2829 3.2540 15 6 2.1334 8.1347 3.5576 16 7 1.4753 9.1225 2.9914 17 14 2.4225 8.1417 5.4031 18 1 3.8823 8.1338 5.6756 19 1 1.8147 9.3605 5.9948 20 1 1.7999 6.9358 6.0063 21 6 3.6406 0.6525 0.0057 22 7 3.6414 -0.6565 0.0038 23 7 2.3124 -1.0988 -0.0033 24 6 1.8868 -2.4341 -0.0077 25 6 0.8251 -2.8232 -0.8139 26 6 0.4071 -4.1394 -0.8163 27 6 1.0449 -5.0706 -0.0171 28 6 2.1031 -4.6866 0.7875 29 17 2.9006 -5.8584 1.7897 30 6 2.5286 -3.3710 0.7904 31 1 -0.3633 -0.0900 -1.0237 32 1 -0.3633 -0.8415 0.5898 33 1 -0.3634 0.9316 0.4339 34 1 0.9336 2.6422 -0.0033 35 1 3.7562 2.9193 -1.8617 36 1 2.4455 4.1131 -2.0205 37 1 4.0432 4.6206 -1.4231 38 1 4.3937 6.2124 -0.7952 39 1 4.9359 6.6234 0.8497 40 1 4.8026 4.9183 0.3565 41 1 2.8344 7.9738 0.8579 42 1 1.3060 7.0943 1.1000 43 1 1.1403 9.8549 3.5321 44 1 4.5163 1.2847 0.0105 45 1 0.3260 -2.0967 -1.4381 46 1 -0.4183 -4.4421 -1.4436 47 1 0.7164 -6.0994 -0.0211 48 1 3.3571 -3.0722 1.4152 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097102916.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:44 Heat of formation + Delta-G solvation = 59.406383 kcal Electronic energy + Delta-G solvation = -31064.249212 eV Core-core repulsion = 26760.520313 eV Total energy + Delta-G solvation = -4303.728899 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.141 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.55939 -40.93350 -40.14191 -37.60340 -36.95077 -36.57013 -34.80912 -34.35330 -33.34180 -31.93541 -31.04233 -29.62107 -29.15874 -27.67814 -27.25608 -25.66370 -24.50996 -23.98597 -23.58077 -21.73036 -20.97410 -20.07667 -18.71901 -18.61387 -18.20611 -17.49534 -17.23992 -16.94118 -16.51777 -16.42432 -16.23746 -16.14980 -15.47653 -15.33553 -15.11333 -14.79151 -14.68048 -14.48743 -14.37069 -14.17071 -13.77708 -13.74243 -13.52180 -13.40162 -13.32238 -13.10867 -12.96821 -12.84527 -12.75326 -12.62320 -12.59626 -12.54226 -12.29164 -12.15098 -12.02410 -11.83277 -11.71225 -11.35049 -10.76001 -10.64325 -10.52105 -9.97353 -9.60574 -9.42366 -8.22676 -8.03774 -6.36968 -0.22314 0.04700 0.87626 1.00562 1.35950 1.39255 1.39797 1.46915 1.76991 1.87897 2.16949 2.38634 2.47544 2.76546 3.06947 3.59594 3.63956 3.71301 3.82531 3.94567 4.01215 4.07760 4.12264 4.24623 4.26832 4.33134 4.41666 4.48207 4.65864 4.67569 4.68679 4.81339 4.87051 4.91637 4.99286 5.01856 5.03916 5.05664 5.15428 5.21472 5.23372 5.33314 5.38798 5.53281 5.55369 5.82419 6.05908 6.18607 6.31474 6.57438 6.69773 6.76414 6.92326 7.26987 7.43667 8.83872 Molecular weight = 376.14amu Principal moments of inertia in cm(-1) A = 0.013733 B = 0.001745 C = 0.001669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2038.378223 B =16041.298158 C =16772.254275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.005 4.005 3 C 0.069 3.931 4 N -0.724 5.724 5 C 0.158 3.842 6 H 0.110 0.890 7 C -0.164 4.164 8 C 0.492 3.508 9 O -0.591 6.591 10 N -0.603 5.603 11 C 0.071 3.929 12 C 0.260 3.740 13 C -0.542 4.542 14 H 0.052 0.948 15 C 0.008 3.992 16 N -0.926 5.926 17 Si 0.964 3.036 18 H -0.260 1.260 19 H -0.278 1.278 20 H -0.280 1.280 21 C 0.023 3.977 22 N -0.295 5.295 23 N -0.333 5.333 24 C 0.158 3.842 25 C -0.124 4.124 26 C -0.073 4.073 27 C -0.111 4.111 28 C -0.026 4.026 29 Cl -0.064 7.064 30 C -0.124 4.124 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.401 0.599 35 H 0.085 0.915 36 H 0.050 0.950 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.027 0.973 42 H -0.001 1.001 43 H 0.267 0.733 44 H 0.208 0.792 45 H 0.150 0.850 46 H 0.180 0.820 47 H 0.164 0.836 48 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.297 -28.388 -12.169 30.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.131 4.131 3 C -0.038 4.038 4 N -0.362 5.362 5 C 0.048 3.952 6 H 0.128 0.872 7 C -0.223 4.223 8 C 0.280 3.720 9 O -0.472 6.472 10 N -0.334 5.334 11 C -0.071 4.071 12 C 0.138 3.862 13 C -0.581 4.581 14 H 0.070 0.930 15 C -0.191 4.191 16 N -0.566 5.566 17 Si 0.789 3.211 18 H -0.185 1.185 19 H -0.203 1.203 20 H -0.206 1.206 21 C -0.165 4.165 22 N -0.114 5.114 23 N -0.115 5.115 24 C 0.066 3.934 25 C -0.144 4.144 26 C -0.092 4.092 27 C -0.130 4.130 28 C -0.053 4.053 29 Cl -0.035 7.035 30 C -0.145 4.145 31 H 0.113 0.887 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.237 0.763 35 H 0.103 0.897 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.098 0.902 39 H 0.085 0.915 40 H 0.114 0.886 41 H 0.045 0.955 42 H 0.017 0.983 43 H 0.076 0.924 44 H 0.225 0.775 45 H 0.168 0.832 46 H 0.197 0.803 47 H 0.181 0.819 48 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.600 -29.286 -11.840 31.695 hybrid contribution -0.583 1.504 1.463 2.178 sum 2.017 -27.781 -10.376 29.724 Atomic orbital electron populations 1.20395 0.85553 1.03753 1.03927 1.20635 0.95170 0.85125 1.12131 1.17493 0.92419 0.84996 1.08930 1.43604 1.07711 0.99245 1.85658 1.20533 0.91915 0.84265 0.98439 0.87241 1.22441 1.02437 1.04175 0.93225 1.21345 0.86256 0.85635 0.78761 1.90622 1.20335 1.84555 1.51717 1.48070 1.14189 1.11621 1.59484 1.22198 0.80484 1.04183 1.00227 1.18766 0.92815 0.82245 0.92355 1.21665 1.36097 1.06548 0.93781 0.92997 1.25820 0.94579 0.95013 1.03683 1.70034 1.37844 1.10930 1.37783 0.85523 0.79100 0.77320 0.79196 1.18458 1.20320 1.20622 1.24080 0.97372 0.91870 1.03206 1.77308 0.97377 1.12622 1.24099 1.45277 1.03511 1.03193 1.59520 1.17425 0.97428 0.80297 0.98274 1.21471 0.96678 0.98427 0.97846 1.21402 0.99676 0.90430 0.97665 1.21510 0.93916 1.02405 0.95141 1.20801 0.97385 0.89580 0.97557 1.98388 1.79553 1.57420 1.68181 1.20821 1.01800 0.91932 0.99933 0.88709 0.90328 0.90761 0.76299 0.89660 0.93129 0.88666 0.90154 0.91466 0.88563 0.95499 0.98298 0.92414 0.77500 0.83248 0.80312 0.81851 0.85772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.41 8.65 71.24 0.62 -0.79 16 2 C 0.00 -0.12 6.79 41.29 0.28 0.16 16 3 C 0.07 1.78 6.90 37.62 0.26 2.04 16 4 N -0.72 -20.24 5.19 -322.99 -1.68 -21.92 16 5 C 0.16 4.30 2.19 44.25 0.10 4.40 16 6 H 0.11 2.59 6.42 -2.39 -0.02 2.57 16 7 C -0.16 -3.34 9.14 71.98 0.66 -2.68 16 8 C 0.49 19.59 7.14 87.66 0.63 20.22 16 9 O -0.59 -29.60 15.42 -3.05 -0.05 -29.64 16 10 N -0.60 -24.32 2.86 -851.11 -2.43 -26.75 16 11 C 0.07 1.92 8.80 127.77 1.12 3.04 16 12 C 0.26 13.71 5.16 85.63 0.44 14.15 16 13 C -0.54 -30.96 9.39 25.60 0.24 -30.72 16 14 H 0.05 2.94 7.81 -2.91 -0.02 2.92 16 15 C 0.01 0.47 5.46 84.65 0.46 0.93 16 16 N -0.93 -55.63 13.29 21.45 0.28 -55.35 16 17 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 18 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 20 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 21 C 0.02 0.56 11.15 85.33 0.95 1.51 16 22 N -0.29 -7.87 12.40 -56.71 -0.70 -8.57 16 23 N -0.33 -8.14 3.73 -175.09 -0.65 -8.79 16 24 C 0.16 3.21 6.15 38.10 0.23 3.45 16 25 C -0.12 -1.69 8.60 22.39 0.19 -1.50 16 26 C -0.07 -0.63 10.04 22.25 0.22 -0.40 16 27 C -0.11 -1.16 9.83 22.31 0.22 -0.94 16 28 C -0.03 -0.42 6.32 22.31 0.14 -0.27 16 29 Cl -0.06 -1.02 28.95 -2.72 -0.08 -1.10 16 30 C -0.12 -2.52 9.62 22.41 0.22 -2.30 16 31 H 0.09 1.27 7.63 -2.39 -0.02 1.25 16 32 H 0.08 1.25 7.57 -2.39 -0.02 1.24 16 33 H 0.07 1.50 7.43 -2.38 -0.02 1.48 16 34 H 0.40 12.33 7.05 -92.71 -0.65 11.68 16 35 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 1.62 4.53 -2.39 -0.01 1.61 16 38 H 0.08 1.72 6.95 -2.39 -0.02 1.70 16 39 H 0.07 1.95 8.07 -2.39 -0.02 1.93 16 40 H 0.10 1.90 6.01 -2.38 -0.01 1.89 16 41 H 0.03 1.43 8.07 -2.38 -0.02 1.41 16 42 H 0.00 -0.07 7.42 -2.39 -0.02 -0.09 16 43 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 44 H 0.21 3.68 7.45 -2.91 -0.02 3.66 16 45 H 0.15 1.64 6.66 -2.91 -0.02 1.62 16 46 H 0.18 0.22 8.06 -2.91 -0.02 0.20 16 47 H 0.16 0.88 8.06 -2.91 -0.02 0.85 16 48 H 0.12 2.86 8.06 -2.91 -0.02 2.84 16 Total: -1.00 -78.25 411.87 4.06 -74.19 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.36 Total: 20.71 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 6.98 Total: 10.29 kcal Atomic # 7 Polarization: -116.21 SS G_CDS: -5.18 Total: -121.38 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -0.05 Total: -29.64 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -78.25 4.06 -74.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097102916.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.596 kcal (2) G-P(sol) polarization free energy of solvation -78.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds