Wall clock time and date at job start Tue Mar 31 2020 06:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35708 * 126.24030 * 2 1 4 4 N 1.40755 * 126.06310 * 0.07301 * 3 2 1 5 5 C 1.46509 * 120.00066 * 180.26439 * 4 3 2 6 6 H 1.08999 * 109.46420 * 34.99635 * 5 4 3 7 7 C 1.52996 * 109.46892 * 274.99964 * 5 4 3 8 8 C 1.50698 * 109.46959 * 154.99611 * 5 4 3 9 9 O 1.21273 * 120.00209 * 5.88020 * 8 5 4 10 10 N 1.34776 * 119.99823 * 185.87373 * 8 5 4 11 11 C 1.46506 * 119.99754 * 4.64835 * 10 8 5 12 12 C 1.46496 * 120.00230 * 184.64999 * 10 8 5 13 13 C 1.50703 * 109.47145 * 89.99905 * 12 10 8 14 14 H 1.07995 * 120.00054 * 0.02562 * 13 12 10 15 15 C 1.37883 * 119.99682 * 180.02562 * 13 12 10 16 16 N 1.31509 * 120.00127 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99604 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47527 * 89.99870 * 17 15 13 19 19 H 1.48500 * 109.46732 * 209.99582 * 17 15 13 20 20 H 1.48503 * 109.47040 * 329.99462 * 17 15 13 21 21 C 1.40296 * 107.86999 * 180.27734 * 3 2 1 22 22 N 1.30891 * 108.40231 * 359.75618 * 21 3 2 23 23 N 1.36242 * 126.23787 * 179.87241 * 2 1 3 24 24 C 1.40148 * 126.08285 * 359.97438 * 23 2 1 25 25 C 1.38879 * 120.05665 * 144.71857 * 24 23 2 26 26 C 1.38105 * 119.95635 * 180.02562 * 25 24 23 27 27 C 1.38281 * 120.07983 * 359.97438 * 26 25 24 28 28 C 1.38375 * 120.12190 * 0.02562 * 27 26 25 29 29 Cl 1.73609 * 119.97697 * 180.02562 * 28 27 26 30 30 C 1.38254 * 120.04301 * 359.97438 * 28 27 26 31 31 H 1.08991 * 109.47027 * 270.15677 * 1 2 3 32 32 H 1.09006 * 109.46612 * 30.16021 * 1 2 3 33 33 H 1.09001 * 109.47038 * 150.15431 * 1 2 3 34 34 H 0.96997 * 120.00378 * 0.26331 * 4 3 2 35 35 H 1.08990 * 109.47469 * 309.35511 * 7 5 4 36 36 H 1.09003 * 109.47026 * 69.36144 * 7 5 4 37 37 H 1.09007 * 109.46741 * 189.34976 * 7 5 4 38 38 H 1.09001 * 109.46990 * 95.81898 * 11 10 8 39 39 H 1.08994 * 109.46836 * 215.81385 * 11 10 8 40 40 H 1.08997 * 109.47556 * 335.81514 * 11 10 8 41 41 H 1.09003 * 109.47262 * 209.99883 * 12 10 8 42 42 H 1.09001 * 109.47125 * 330.00029 * 12 10 8 43 43 H 0.97002 * 119.99941 * 180.02562 * 16 15 13 44 44 H 1.08003 * 125.79880 * 179.76447 * 21 3 2 45 45 H 1.07999 * 120.02302 * 359.74231 * 25 24 23 46 46 H 1.07992 * 119.95794 * 180.02562 * 26 25 24 47 47 H 1.08005 * 119.93749 * 179.97438 * 27 26 25 48 48 H 1.08005 * 120.03641 * 179.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3093 1.0945 0.0000 4 7 1.8814 2.4355 0.0014 5 6 2.8675 3.5191 -0.0046 6 1 3.7314 3.2207 -0.5985 7 6 3.3115 3.8125 1.4298 8 6 2.2500 4.7568 -0.6026 9 8 1.0712 4.7694 -0.8876 10 7 3.0076 5.8499 -0.8206 11 6 4.4507 5.8024 -0.5721 12 6 2.3883 7.0855 -1.3061 13 6 1.9588 7.9271 -0.1321 14 1 2.1304 7.5768 0.8749 15 6 1.3467 9.1444 -0.3437 16 7 1.1382 9.5712 -1.5701 17 14 0.8150 10.1879 1.1115 18 1 1.9245 11.0941 1.5026 19 1 -0.3733 10.9945 0.7341 20 1 0.4710 9.3045 2.2546 21 6 3.6408 0.6524 -0.0065 22 7 3.6415 -0.6565 -0.0049 23 7 2.3124 -1.0989 0.0024 24 6 1.8868 -2.4342 0.0059 25 6 2.6102 -3.3966 -0.6862 26 6 2.1886 -4.7118 -0.6818 27 6 1.0474 -5.0714 0.0113 28 6 0.3242 -4.1151 0.7021 29 17 -1.1077 -4.5710 1.5716 30 6 0.7416 -2.7971 0.7011 31 1 -0.3633 0.0028 1.0276 32 1 -0.3633 0.8886 -0.5164 33 1 -0.3633 -0.8914 -0.5114 34 1 0.9338 2.6422 0.0064 35 1 2.4336 3.9480 2.0614 36 1 3.9036 2.9777 1.8048 37 1 3.9138 4.7209 1.4450 38 1 4.9732 5.5894 -1.5047 39 1 4.7837 6.7635 -0.1804 40 1 4.6688 5.0190 0.1537 41 1 3.1082 7.6410 -1.9073 42 1 1.5182 6.8408 -1.9154 43 1 0.7079 10.4277 -1.7189 44 1 4.5164 1.2846 -0.0117 45 1 3.4993 -3.1161 -1.2313 46 1 2.7514 -5.4603 -1.2197 47 1 0.7196 -6.1005 0.0128 48 1 0.1768 -2.0507 1.2399 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097102917.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:49 Heat of formation + Delta-G solvation = 81.330549 kcal Electronic energy + Delta-G solvation = -31093.620317 eV Core-core repulsion = 26790.842121 eV Total energy + Delta-G solvation = -4302.778196 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.141 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.71655 -39.65417 -39.27677 -36.95951 -35.78249 -34.94625 -33.69597 -32.86952 -32.25450 -31.20070 -30.09483 -28.63716 -27.66334 -26.56018 -26.03159 -24.02329 -23.71707 -23.28559 -22.25099 -20.82812 -20.04631 -18.71201 -17.74098 -17.07707 -16.75606 -16.55286 -16.13793 -15.85804 -15.47976 -15.37685 -14.82720 -14.73160 -14.60043 -14.36304 -14.13178 -13.92530 -13.89790 -13.50540 -13.03672 -12.98072 -12.85328 -12.52350 -12.35934 -12.21052 -12.10028 -12.04921 -12.02002 -11.94932 -11.59374 -11.38902 -11.32884 -11.19263 -10.94282 -10.89149 -10.62153 -10.52197 -10.20194 -9.89098 -9.67364 -9.35848 -8.97887 -8.82096 -8.47883 -7.72171 -7.07051 -6.08623 -4.13809 0.44112 0.65111 1.54107 1.79672 2.19047 2.77855 3.10318 3.26059 3.27428 3.34224 3.38584 3.46131 4.01750 4.24342 4.40432 4.43728 4.54825 4.57652 4.64050 4.79079 4.91264 4.92819 5.07208 5.18514 5.19289 5.25880 5.27538 5.31951 5.37636 5.50352 5.60290 5.66442 5.72368 5.78350 5.80404 5.83127 5.88537 5.89142 6.08683 6.13776 6.24060 6.34042 6.94533 6.98647 7.32147 7.39800 7.44763 7.50160 7.87426 7.97415 8.17872 8.33123 8.82391 8.97931 9.51365 10.99411 Molecular weight = 376.14amu Principal moments of inertia in cm(-1) A = 0.017342 B = 0.001702 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.184263 B =16447.846769 C =17392.968344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.009 4.009 3 C 0.092 3.908 4 N -0.718 5.718 5 C 0.143 3.857 6 H 0.090 0.910 7 C -0.171 4.171 8 C 0.504 3.496 9 O -0.539 6.539 10 N -0.597 5.597 11 C 0.067 3.933 12 C 0.245 3.755 13 C -0.528 4.528 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.893 5.893 17 Si 0.898 3.102 18 H -0.280 1.280 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.027 3.973 22 N -0.268 5.268 23 N -0.329 5.329 24 C 0.191 3.809 25 C -0.115 4.115 26 C -0.086 4.086 27 C -0.122 4.122 28 C -0.014 4.014 29 Cl -0.061 7.061 30 C -0.130 4.130 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.069 0.931 34 H 0.409 0.591 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.080 0.920 38 H 0.047 0.953 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.033 0.967 42 H 0.045 0.955 43 H 0.264 0.736 44 H 0.188 0.812 45 H 0.139 0.861 46 H 0.141 0.859 47 H 0.138 0.862 48 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.316 -28.587 3.752 29.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C -0.016 4.016 4 N -0.356 5.356 5 C 0.033 3.967 6 H 0.108 0.892 7 C -0.229 4.229 8 C 0.289 3.711 9 O -0.416 6.416 10 N -0.328 5.328 11 C -0.077 4.077 12 C 0.126 3.874 13 C -0.567 4.567 14 H 0.076 0.924 15 C -0.141 4.141 16 N -0.532 5.532 17 Si 0.726 3.274 18 H -0.206 1.206 19 H -0.211 1.211 20 H -0.199 1.199 21 C -0.162 4.162 22 N -0.086 5.086 23 N -0.111 5.111 24 C 0.098 3.902 25 C -0.135 4.135 26 C -0.104 4.104 27 C -0.141 4.141 28 C -0.041 4.041 29 Cl -0.032 7.032 30 C -0.152 4.152 31 H 0.092 0.908 32 H 0.102 0.898 33 H 0.088 0.912 34 H 0.248 0.752 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.065 0.935 39 H 0.093 0.907 40 H 0.089 0.911 41 H 0.051 0.949 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.204 0.796 45 H 0.157 0.843 46 H 0.159 0.841 47 H 0.156 0.844 48 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.352 -29.370 3.545 29.902 hybrid contribution -1.056 1.644 0.860 2.135 sum 3.296 -27.726 4.405 28.267 Atomic orbital electron populations 1.20390 0.87232 1.03797 1.02738 1.20191 0.94042 0.85292 1.13883 1.17372 0.91759 0.85357 1.07092 1.43696 1.08334 0.98843 1.84709 1.20591 0.92004 0.87053 0.97066 0.89239 1.22432 1.02516 1.02381 0.95607 1.20278 0.87116 0.84318 0.79413 1.90644 1.15992 1.82932 1.52067 1.48073 1.07314 1.12975 1.64476 1.21990 0.81949 1.03373 1.00403 1.19317 0.94138 0.78740 0.95250 1.21414 1.39368 1.02884 0.92986 0.92404 1.24943 0.95569 0.97674 0.95946 1.69930 1.42915 1.20821 1.19555 0.86494 0.78218 0.80129 0.82565 1.20615 1.21084 1.19900 1.23740 0.96897 0.91926 1.03686 1.77322 0.96172 1.12059 1.23073 1.45125 1.03934 1.02483 1.59590 1.17105 0.94684 0.81151 0.97307 1.21136 1.01013 0.92433 0.98954 1.21011 0.95641 0.95624 0.98159 1.21119 0.95525 0.99536 0.97960 1.20592 0.91118 0.93660 0.98725 1.98394 1.37211 1.92506 1.75100 1.20931 0.97860 0.95572 1.00793 0.90753 0.89759 0.91190 0.75245 0.91561 0.91886 0.90193 0.93472 0.90734 0.91056 0.94896 0.93706 0.92672 0.79566 0.84283 0.84139 0.84425 0.83846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 8.43 36.01 0.30 -0.52 16 2 C -0.01 -0.11 6.80 -81.54 -0.55 -0.67 16 3 C 0.09 1.20 6.90 -83.89 -0.58 0.62 16 4 N -0.72 -10.12 5.22 -53.44 -0.28 -10.39 16 5 C 0.14 2.02 2.16 -69.08 -0.15 1.88 16 6 H 0.09 1.08 6.75 -51.93 -0.35 0.73 16 7 C -0.17 -2.13 8.98 37.16 0.33 -1.79 16 8 C 0.50 9.89 7.05 -10.99 -0.08 9.81 16 9 O -0.54 -12.84 15.37 5.56 0.09 -12.76 16 10 N -0.60 -11.99 2.86 -182.96 -0.52 -12.51 16 11 C 0.07 0.97 9.74 59.85 0.58 1.55 16 12 C 0.24 6.23 5.22 -5.19 -0.03 6.20 16 13 C -0.53 -14.54 9.39 -34.44 -0.32 -14.87 16 14 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 15 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 16 N -0.89 -26.17 13.29 55.43 0.74 -25.43 16 17 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 20 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 21 C 0.03 0.32 11.15 -17.18 -0.19 0.13 16 22 N -0.27 -3.43 12.33 30.72 0.38 -3.05 16 23 N -0.33 -4.02 3.76 -6.69 -0.03 -4.05 16 24 C 0.19 1.99 6.29 -83.61 -0.53 1.46 16 25 C -0.11 -1.00 9.76 -39.39 -0.38 -1.39 16 26 C -0.09 -0.55 10.04 -39.61 -0.40 -0.95 16 27 C -0.12 -0.80 9.83 -39.52 -0.39 -1.19 16 28 C -0.01 -0.11 6.32 -39.52 -0.25 -0.36 16 29 Cl -0.06 -0.47 28.95 -51.86 -1.50 -1.97 16 30 C -0.13 -1.19 8.09 -39.37 -0.32 -1.51 16 31 H 0.07 0.64 7.77 -51.93 -0.40 0.24 16 32 H 0.08 0.86 7.62 -51.93 -0.40 0.47 16 33 H 0.07 0.63 6.94 -51.93 -0.36 0.27 16 34 H 0.41 6.26 7.13 -40.82 -0.29 5.97 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.98 5.41 -51.92 -0.28 0.69 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 1.13 8.11 -51.93 -0.42 0.70 16 40 H 0.07 0.81 4.11 -51.93 -0.21 0.60 16 41 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 42 H 0.04 1.30 7.36 -51.93 -0.38 0.91 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.19 1.71 7.45 -52.48 -0.39 1.32 16 45 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 46 H 0.14 0.52 8.06 -52.49 -0.42 0.09 16 47 H 0.14 0.62 8.06 -52.48 -0.42 0.20 16 48 H 0.14 1.27 6.15 -52.48 -0.32 0.94 16 LS Contribution 411.84 15.07 6.21 6.21 Total: -1.00 -33.43 411.84 -9.30 -42.73 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: -6.31 Total: 4.76 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -3.04 Total: 0.03 kcal Atomic # 7 Polarization: -55.73 SS G_CDS: 0.29 Total: -55.44 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: 0.09 Total: -12.76 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -33.43 -9.30 -42.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097102917.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.057 kcal (2) G-P(sol) polarization free energy of solvation -33.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds