Wall clock time and date at job start Tue Mar 31 2020 06:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35708 * 126.24030 * 2 1 4 4 N 1.40755 * 126.06310 * 0.07301 * 3 2 1 5 5 C 1.46509 * 120.00066 * 180.26439 * 4 3 2 6 6 H 1.08999 * 109.46420 * 34.99635 * 5 4 3 7 7 C 1.52996 * 109.46892 * 274.99964 * 5 4 3 8 8 C 1.50698 * 109.46959 * 154.99611 * 5 4 3 9 9 O 1.21273 * 120.00209 * 5.88020 * 8 5 4 10 10 N 1.34776 * 119.99823 * 185.87373 * 8 5 4 11 11 C 1.46506 * 119.99754 * 4.64835 * 10 8 5 12 12 C 1.46496 * 120.00230 * 184.64999 * 10 8 5 13 13 C 1.50703 * 109.47145 * 89.99905 * 12 10 8 14 14 H 1.07995 * 120.00054 * 0.02562 * 13 12 10 15 15 C 1.37883 * 119.99682 * 180.02562 * 13 12 10 16 16 N 1.31509 * 120.00127 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 119.99604 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47527 * 89.99870 * 17 15 13 19 19 H 1.48500 * 109.46732 * 209.99582 * 17 15 13 20 20 H 1.48503 * 109.47040 * 329.99462 * 17 15 13 21 21 C 1.40296 * 107.86999 * 180.27734 * 3 2 1 22 22 N 1.30891 * 108.40231 * 359.75618 * 21 3 2 23 23 N 1.36242 * 126.23787 * 179.87241 * 2 1 3 24 24 C 1.40148 * 126.08285 * 359.97438 * 23 2 1 25 25 C 1.38879 * 120.05665 * 144.71857 * 24 23 2 26 26 C 1.38105 * 119.95635 * 180.02562 * 25 24 23 27 27 C 1.38281 * 120.07983 * 359.97438 * 26 25 24 28 28 C 1.38375 * 120.12190 * 0.02562 * 27 26 25 29 29 Cl 1.73609 * 119.97697 * 180.02562 * 28 27 26 30 30 C 1.38254 * 120.04301 * 359.97438 * 28 27 26 31 31 H 1.08991 * 109.47027 * 270.15677 * 1 2 3 32 32 H 1.09006 * 109.46612 * 30.16021 * 1 2 3 33 33 H 1.09001 * 109.47038 * 150.15431 * 1 2 3 34 34 H 0.96997 * 120.00378 * 0.26331 * 4 3 2 35 35 H 1.08990 * 109.47469 * 309.35511 * 7 5 4 36 36 H 1.09003 * 109.47026 * 69.36144 * 7 5 4 37 37 H 1.09007 * 109.46741 * 189.34976 * 7 5 4 38 38 H 1.09001 * 109.46990 * 95.81898 * 11 10 8 39 39 H 1.08994 * 109.46836 * 215.81385 * 11 10 8 40 40 H 1.08997 * 109.47556 * 335.81514 * 11 10 8 41 41 H 1.09003 * 109.47262 * 209.99883 * 12 10 8 42 42 H 1.09001 * 109.47125 * 330.00029 * 12 10 8 43 43 H 0.97002 * 119.99941 * 180.02562 * 16 15 13 44 44 H 1.08003 * 125.79880 * 179.76447 * 21 3 2 45 45 H 1.07999 * 120.02302 * 359.74231 * 25 24 23 46 46 H 1.07992 * 119.95794 * 180.02562 * 26 25 24 47 47 H 1.08005 * 119.93749 * 179.97438 * 27 26 25 48 48 H 1.08005 * 120.03641 * 179.97438 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3093 1.0945 0.0000 4 7 1.8814 2.4355 0.0014 5 6 2.8675 3.5191 -0.0046 6 1 3.7314 3.2207 -0.5985 7 6 3.3115 3.8125 1.4298 8 6 2.2500 4.7568 -0.6026 9 8 1.0712 4.7694 -0.8876 10 7 3.0076 5.8499 -0.8206 11 6 4.4507 5.8024 -0.5721 12 6 2.3883 7.0855 -1.3061 13 6 1.9588 7.9271 -0.1321 14 1 2.1304 7.5768 0.8749 15 6 1.3467 9.1444 -0.3437 16 7 1.1382 9.5712 -1.5701 17 14 0.8150 10.1879 1.1115 18 1 1.9245 11.0941 1.5026 19 1 -0.3733 10.9945 0.7341 20 1 0.4710 9.3045 2.2546 21 6 3.6408 0.6524 -0.0065 22 7 3.6415 -0.6565 -0.0049 23 7 2.3124 -1.0989 0.0024 24 6 1.8868 -2.4342 0.0059 25 6 2.6102 -3.3966 -0.6862 26 6 2.1886 -4.7118 -0.6818 27 6 1.0474 -5.0714 0.0113 28 6 0.3242 -4.1151 0.7021 29 17 -1.1077 -4.5710 1.5716 30 6 0.7416 -2.7971 0.7011 31 1 -0.3633 0.0028 1.0276 32 1 -0.3633 0.8886 -0.5164 33 1 -0.3633 -0.8914 -0.5114 34 1 0.9338 2.6422 0.0064 35 1 2.4336 3.9480 2.0614 36 1 3.9036 2.9777 1.8048 37 1 3.9138 4.7209 1.4450 38 1 4.9732 5.5894 -1.5047 39 1 4.7837 6.7635 -0.1804 40 1 4.6688 5.0190 0.1537 41 1 3.1082 7.6410 -1.9073 42 1 1.5182 6.8408 -1.9154 43 1 0.7079 10.4277 -1.7189 44 1 4.5164 1.2846 -0.0117 45 1 3.4993 -3.1161 -1.2313 46 1 2.7514 -5.4603 -1.2197 47 1 0.7196 -6.1005 0.0128 48 1 0.1768 -2.0507 1.2399 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097102917.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:48 Heat of formation + Delta-G solvation = 61.446663 kcal Electronic energy + Delta-G solvation = -31094.482547 eV Core-core repulsion = 26790.842121 eV Total energy + Delta-G solvation = -4303.640426 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.141 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.58278 -40.94365 -40.13874 -37.58912 -36.96447 -36.56380 -34.79191 -34.45616 -33.33827 -31.85884 -31.10671 -29.63821 -29.24669 -27.64158 -27.27823 -25.65643 -24.45825 -24.09011 -23.57155 -21.71199 -20.97523 -20.06329 -18.67012 -18.60525 -18.24105 -17.53910 -17.25353 -16.87792 -16.50803 -16.43498 -16.20886 -16.16304 -15.59773 -15.45548 -15.07187 -14.78882 -14.71176 -14.50878 -14.38011 -14.10710 -13.80380 -13.75711 -13.54736 -13.42097 -13.29190 -13.12080 -13.02899 -12.82855 -12.77906 -12.65002 -12.61971 -12.55417 -12.27172 -12.13166 -11.99103 -11.82419 -11.67824 -11.40443 -10.78946 -10.63750 -10.52808 -9.97767 -9.56016 -9.42087 -8.22135 -8.04489 -6.36642 -0.23541 0.04510 0.87264 1.01060 1.37137 1.39662 1.39977 1.49827 1.75515 1.86141 2.17969 2.39155 2.49739 2.74713 3.07823 3.56927 3.61736 3.69687 3.83519 3.93158 3.98808 4.07999 4.09810 4.21479 4.26745 4.36043 4.38682 4.44329 4.58090 4.63736 4.73006 4.76033 4.82042 4.88964 4.95577 5.00778 5.02100 5.04966 5.16282 5.24116 5.24621 5.32810 5.37328 5.53365 5.56107 5.82673 6.05988 6.15931 6.30360 6.56638 6.70483 6.76198 6.89634 7.27115 7.43081 8.85004 Molecular weight = 376.14amu Principal moments of inertia in cm(-1) A = 0.017342 B = 0.001702 C = 0.001609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.184263 B =16447.846769 C =17392.968344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.011 4.011 3 C 0.072 3.928 4 N -0.725 5.725 5 C 0.159 3.841 6 H 0.120 0.880 7 C -0.164 4.164 8 C 0.493 3.507 9 O -0.592 6.592 10 N -0.603 5.603 11 C 0.060 3.940 12 C 0.258 3.742 13 C -0.540 4.540 14 H 0.057 0.943 15 C 0.006 3.994 16 N -0.929 5.929 17 Si 0.967 3.033 18 H -0.263 1.263 19 H -0.283 1.283 20 H -0.272 1.272 21 C 0.027 3.973 22 N -0.286 5.286 23 N -0.331 5.331 24 C 0.161 3.839 25 C -0.122 4.122 26 C -0.076 4.076 27 C -0.114 4.114 28 C -0.021 4.021 29 Cl -0.060 7.060 30 C -0.136 4.136 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.400 0.600 35 H 0.046 0.954 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.110 0.890 41 H 0.024 0.976 42 H -0.002 1.002 43 H 0.266 0.734 44 H 0.214 0.786 45 H 0.137 0.863 46 H 0.174 0.826 47 H 0.163 0.837 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.843 -30.777 5.103 31.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.137 4.137 3 C -0.035 4.035 4 N -0.363 5.363 5 C 0.049 3.951 6 H 0.138 0.862 7 C -0.222 4.222 8 C 0.281 3.719 9 O -0.473 6.473 10 N -0.334 5.334 11 C -0.081 4.081 12 C 0.137 3.863 13 C -0.578 4.578 14 H 0.075 0.925 15 C -0.193 4.193 16 N -0.568 5.568 17 Si 0.792 3.208 18 H -0.188 1.188 19 H -0.209 1.209 20 H -0.196 1.196 21 C -0.162 4.162 22 N -0.105 5.105 23 N -0.113 5.113 24 C 0.069 3.931 25 C -0.142 4.142 26 C -0.094 4.094 27 C -0.133 4.133 28 C -0.049 4.049 29 Cl -0.031 7.031 30 C -0.157 4.157 31 H 0.104 0.896 32 H 0.095 0.905 33 H 0.096 0.904 34 H 0.236 0.764 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.128 0.872 41 H 0.042 0.958 42 H 0.016 0.984 43 H 0.075 0.925 44 H 0.231 0.769 45 H 0.155 0.845 46 H 0.191 0.809 47 H 0.181 0.819 48 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 5.941 -31.615 4.912 32.541 hybrid contribution -1.568 2.164 0.384 2.700 sum 4.373 -29.451 5.296 30.241 Atomic orbital electron populations 1.20416 0.86198 1.03791 1.03484 1.20565 0.94951 0.85529 1.12661 1.17496 0.92568 0.84796 1.08674 1.43647 1.07761 0.99317 1.85534 1.20547 0.92183 0.84274 0.98070 0.86226 1.22406 1.02142 1.03861 0.93826 1.21337 0.86575 0.85610 0.78376 1.90611 1.18537 1.84081 1.54104 1.48061 1.09663 1.11474 1.64193 1.22312 0.78472 1.04594 1.02742 1.18767 0.92539 0.80800 0.94222 1.21697 1.39415 1.03353 0.93362 0.92485 1.25867 0.95541 0.99111 0.98776 1.70055 1.43698 1.21384 1.21701 0.85419 0.78138 0.78392 0.78885 1.18832 1.20908 1.19649 1.24144 0.97239 0.91884 1.02924 1.77274 0.96787 1.12536 1.23907 1.45288 1.03691 1.03097 1.59248 1.17412 0.95843 0.80830 0.99061 1.21287 1.00896 0.93185 0.98854 1.21365 0.95404 0.95217 0.97410 1.21477 0.94905 1.00404 0.96503 1.20728 0.91418 0.93602 0.99115 1.98396 1.37187 1.92385 1.75134 1.20935 0.97653 0.96175 1.00933 0.89608 0.90483 0.90364 0.76353 0.93459 0.88775 0.89677 0.91212 0.91308 0.87208 0.95824 0.98433 0.92474 0.76948 0.84491 0.80905 0.81921 0.84159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.62 8.43 71.24 0.60 -1.02 16 2 C -0.01 -0.28 6.80 41.29 0.28 0.00 16 3 C 0.07 1.82 6.90 37.62 0.26 2.07 16 4 N -0.72 -20.25 5.22 -322.98 -1.69 -21.94 16 5 C 0.16 4.29 2.16 44.24 0.10 4.39 16 6 H 0.12 2.52 6.75 -2.39 -0.02 2.50 16 7 C -0.16 -3.71 8.98 71.98 0.65 -3.06 16 8 C 0.49 19.65 7.05 87.66 0.62 20.27 16 9 O -0.59 -29.65 15.37 -3.01 -0.05 -29.70 16 10 N -0.60 -24.46 2.86 -851.14 -2.43 -26.90 16 11 C 0.06 1.65 9.74 127.77 1.24 2.90 16 12 C 0.26 13.70 5.22 85.63 0.45 14.15 16 13 C -0.54 -30.44 9.39 25.60 0.24 -30.20 16 14 H 0.06 3.15 7.81 -2.91 -0.02 3.12 16 15 C 0.01 0.34 5.46 84.66 0.46 0.80 16 16 N -0.93 -55.85 13.29 21.45 0.28 -55.56 16 17 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 18 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 21 C 0.03 0.60 11.15 85.33 0.95 1.55 16 22 N -0.29 -7.02 12.33 -56.71 -0.70 -7.72 16 23 N -0.33 -7.90 3.76 -175.08 -0.66 -8.56 16 24 C 0.16 3.23 6.29 38.10 0.24 3.47 16 25 C -0.12 -1.95 9.76 22.39 0.22 -1.73 16 26 C -0.08 -0.76 10.04 22.25 0.22 -0.54 16 27 C -0.11 -1.20 9.83 22.31 0.22 -0.98 16 28 C -0.02 -0.31 6.32 22.31 0.14 -0.17 16 29 Cl -0.06 -0.84 28.95 -2.72 -0.08 -0.92 16 30 C -0.14 -2.39 8.09 22.41 0.18 -2.21 16 31 H 0.09 1.49 7.77 -2.39 -0.02 1.47 16 32 H 0.08 1.65 7.62 -2.38 -0.02 1.63 16 33 H 0.08 1.40 6.94 -2.39 -0.02 1.39 16 34 H 0.40 12.67 7.13 -92.71 -0.66 12.01 16 35 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.08 1.83 5.41 -2.38 -0.01 1.82 16 38 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 1.98 8.11 -2.39 -0.02 1.96 16 40 H 0.11 2.14 4.11 -2.39 -0.01 2.13 16 41 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 42 H 0.00 -0.15 7.36 -2.39 -0.02 -0.17 16 43 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.21 3.22 7.45 -2.91 -0.02 3.20 16 45 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 46 H 0.17 0.59 8.06 -2.91 -0.02 0.56 16 47 H 0.16 0.89 8.06 -2.91 -0.02 0.86 16 48 H 0.14 2.45 6.15 -2.91 -0.02 2.43 16 Total: -1.00 -76.58 411.84 4.13 -72.45 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.35 Total: 22.74 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: 7.07 Total: 9.71 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -5.19 Total: -120.67 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.05 Total: -29.70 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.92 kcal Total: -76.58 4.13 -72.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097102917.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.893 kcal (2) G-P(sol) polarization free energy of solvation -76.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds