Wall clock time and date at job start Tue Mar 31 2020 05:52:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21531 * 119.99999 * 0.02562 * 13 12 2 15 15 C 1.48052 * 119.99974 * 180.02562 * 13 12 2 16 16 N 1.32780 * 119.72536 * 359.71646 * 15 13 12 17 17 C 1.31444 * 121.66488 * 179.75608 * 16 15 13 18 18 C 1.38757 * 120.91186 * 0.52587 * 17 16 15 19 19 Br 1.89102 * 120.32682 * 179.76324 * 18 17 16 20 20 C 1.38637 * 119.34758 * 359.75021 * 18 17 16 21 21 C 1.38712 * 118.47388 * 359.97438 * 20 18 17 22 22 Br 1.89095 * 120.47927 * 179.97438 * 21 20 18 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 27 27 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 28 28 H 1.08001 * 119.54226 * 180.27639 * 17 16 15 29 29 H 1.08001 * 120.76297 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8585 1.1610 -2.4116 15 6 2.6402 -0.7164 -3.5661 16 7 2.9593 -2.0035 -3.4990 17 6 3.3962 -2.6618 -4.5495 18 6 3.5513 -2.0280 -5.7740 19 35 4.1874 -2.9894 -7.2730 20 6 3.2350 -0.6830 -5.8879 21 6 2.7708 -0.0154 -4.7641 22 35 2.3234 1.8196 -4.8551 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.9026 -0.5283 4.4376 27 1 2.2490 -1.6317 -1.1525 28 1 3.6416 -3.7095 -4.4572 29 1 3.3466 -0.1671 -6.8301 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097135154.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:29 Heat of formation + Delta-G solvation = 26.711436 kcal Electronic energy + Delta-G solvation = -17713.237430 eV Core-core repulsion = 14537.010515 eV Total energy + Delta-G solvation = -3176.226915 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 375.916 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.83768 -38.70636 -35.17731 -33.83418 -33.09950 -32.34745 -30.55276 -30.12269 -29.20373 -25.24269 -24.72907 -23.60894 -21.57028 -19.84373 -18.44812 -17.28951 -16.54564 -15.85090 -15.43034 -15.15788 -15.09251 -14.36289 -13.86117 -13.79884 -13.21441 -12.93326 -12.49637 -12.20882 -11.93800 -11.73313 -11.51882 -11.31000 -11.02812 -10.95073 -10.66883 -10.21760 -10.16193 -9.78459 -9.63057 -9.25440 -9.15214 -8.75918 -8.70113 -8.18576 -6.20386 -4.23214 0.05881 0.55640 0.92985 1.43492 2.67756 3.23619 3.35680 3.39142 3.44875 3.68034 3.98504 4.20846 4.31552 4.46694 4.55806 4.79188 5.13964 5.25695 5.40955 5.82435 6.29766 6.35542 6.53233 6.81547 7.10564 7.20462 7.28135 7.47616 8.09869 8.48067 8.69687 8.82991 9.39383 10.91699 Molecular weight = 375.92amu Principal moments of inertia in cm(-1) A = 0.015689 B = 0.003213 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.277964 B = 8712.236406 C =10286.040130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.236 3.764 3 H 0.052 0.948 4 C -0.535 4.535 5 H 0.082 0.918 6 C 0.079 3.921 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.671 5.671 13 C 0.542 3.458 14 O -0.516 6.516 15 C 0.135 3.865 16 N -0.436 5.436 17 C 0.145 3.855 18 C -0.135 4.135 19 Br -0.021 7.021 20 C -0.026 4.026 21 C -0.102 4.102 22 Br 0.021 6.979 23 H 0.054 0.946 24 H 0.037 0.963 25 H 0.049 0.951 26 H 0.267 0.733 27 H 0.405 0.595 28 H 0.178 0.822 29 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.321 -2.582 -25.117 25.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.133 3.867 3 H 0.070 0.930 4 C -0.573 4.573 5 H 0.100 0.900 6 C -0.125 4.125 7 N -0.528 5.528 8 Si 0.714 3.286 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.186 1.186 12 N -0.319 5.319 13 C 0.323 3.677 14 O -0.392 6.392 15 C -0.006 4.006 16 N -0.147 5.147 17 C -0.017 4.017 18 C -0.218 4.218 19 Br 0.064 6.936 20 C -0.055 4.055 21 C -0.186 4.186 22 Br 0.107 6.893 23 H 0.073 0.927 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.077 0.923 27 H 0.241 0.759 28 H 0.195 0.805 29 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 3.072 -1.804 -24.652 24.908 hybrid contribution -0.365 0.335 -0.242 0.551 sum 2.707 -1.470 -24.894 25.084 Atomic orbital electron populations 1.22454 0.98984 1.01056 0.99474 1.19219 0.90332 0.94773 0.82406 0.92980 1.21017 1.33358 1.14524 0.88376 0.90025 1.24822 0.95495 0.96706 0.95488 1.69867 1.44829 1.40050 0.98032 0.86888 0.80548 0.83617 0.77519 1.20288 1.22132 1.18568 1.46148 1.62448 1.14501 1.08827 1.17729 0.80364 0.86706 0.82885 1.90946 1.50474 1.14073 1.83696 1.21690 0.94765 0.89852 0.94338 1.67966 1.09390 1.07211 1.30170 1.23099 0.92185 1.00652 0.85809 1.23167 1.06987 0.95982 0.95624 1.96796 1.86492 1.73337 1.36970 1.21552 0.93227 0.92237 0.98496 1.22970 1.04228 0.95868 0.95525 1.96845 1.91630 1.02772 1.98091 0.92685 0.94371 0.93279 0.92268 0.75938 0.80511 0.82401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 8.96 37.16 0.33 -3.25 15 2 C 0.24 5.60 2.15 -69.08 -0.15 5.45 15 3 H 0.05 1.34 6.63 -51.93 -0.34 1.00 15 4 C -0.53 -14.46 9.31 -34.44 -0.32 -14.78 15 5 H 0.08 2.34 7.98 -52.49 -0.42 1.92 15 6 C 0.08 2.20 5.45 -17.82 -0.10 2.10 15 7 N -0.89 -26.32 13.96 55.43 0.77 -25.55 15 8 Si 0.88 21.59 24.37 -169.99 -4.14 17.45 15 9 H -0.28 -6.53 6.87 56.52 0.39 -6.14 15 10 H -0.29 -7.16 7.11 56.52 0.40 -6.75 15 11 H -0.26 -6.29 6.53 56.52 0.37 -5.92 15 12 N -0.67 -13.78 5.06 -55.81 -0.28 -14.06 15 13 C 0.54 10.45 7.76 -12.23 -0.09 10.36 15 14 O -0.52 -10.87 13.11 5.34 0.07 -10.80 15 15 C 0.13 2.12 6.75 -82.99 -0.56 1.56 15 16 N -0.44 -6.15 9.54 -9.76 -0.09 -6.24 15 17 C 0.14 1.55 10.94 -17.53 -0.19 1.36 15 18 C -0.13 -1.32 6.26 -39.24 -0.25 -1.56 15 19 Br -0.02 -0.16 33.73 -68.01 -2.29 -2.45 15 20 C -0.03 -0.27 9.70 -39.26 -0.38 -0.65 15 21 C -0.10 -1.38 6.28 -38.97 -0.24 -1.63 15 22 Br 0.02 0.29 30.41 -68.01 -2.07 -1.78 15 23 H 0.05 1.16 8.14 -51.93 -0.42 0.73 15 24 H 0.04 0.79 8.14 -51.93 -0.42 0.37 15 25 H 0.05 1.12 3.27 -51.93 -0.17 0.95 15 26 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 27 H 0.41 7.79 7.87 -40.82 -0.32 7.47 15 28 H 0.18 1.37 8.06 -52.49 -0.42 0.95 15 29 H 0.16 1.25 8.06 -52.49 -0.42 0.83 15 LS Contribution 290.70 15.07 4.38 4.38 Total: -1.00 -29.88 290.70 -7.73 -37.61 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -2.13 Total: 2.48 kcal Atomic # 6 Polarization: 0.91 SS G_CDS: -1.95 Total: -1.04 kcal Atomic # 7 Polarization: -46.25 SS G_CDS: 0.40 Total: -45.85 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.07 Total: -10.80 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.14 Total: 17.45 kcal Atomic # 35 Polarization: 0.13 SS G_CDS: -4.36 Total: -4.23 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -29.88 -7.73 -37.61 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097135154.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.322 kcal (2) G-P(sol) polarization free energy of solvation -29.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds