Wall clock time and date at job start Tue Mar 31 2020 05:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50708 * 109.47141 * 119.99670 * 2 1 3 5 5 H 1.08000 * 119.99723 * 120.00060 * 4 2 1 6 6 C 1.37873 * 119.99930 * 300.00010 * 4 2 1 7 7 N 1.31516 * 119.99779 * 179.97438 * 6 4 2 8 8 Si 1.86795 * 120.00284 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47308 * 89.99617 * 8 6 4 10 10 H 1.48501 * 109.47369 * 209.99691 * 8 6 4 11 11 H 1.48502 * 109.47235 * 329.99860 * 8 6 4 12 12 N 1.46500 * 109.47473 * 239.99757 * 2 1 3 13 13 C 1.34780 * 119.99910 * 85.00011 * 12 2 1 14 14 O 1.21531 * 119.99999 * 0.02562 * 13 12 2 15 15 C 1.48052 * 119.99974 * 180.02562 * 13 12 2 16 16 N 1.32780 * 119.72536 * 359.71646 * 15 13 12 17 17 C 1.31444 * 121.66488 * 179.75608 * 16 15 13 18 18 C 1.38757 * 120.91186 * 0.52587 * 17 16 15 19 19 Br 1.89102 * 120.32682 * 179.76324 * 18 17 16 20 20 C 1.38637 * 119.34758 * 359.75021 * 18 17 16 21 21 C 1.38712 * 118.47388 * 359.97438 * 20 18 17 22 22 Br 1.89095 * 120.47927 * 179.97438 * 21 20 18 23 23 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 26 26 H 0.96999 * 119.99874 * 180.02562 * 7 6 4 27 27 H 0.96994 * 119.99975 * 265.00388 * 12 2 1 28 28 H 1.08001 * 119.54226 * 180.27639 * 17 16 15 29 29 H 1.08001 * 120.76297 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6533 -1.5885 1.1315 6 6 1.6993 -0.2393 2.4828 7 7 2.1372 -0.8595 3.5566 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6998 10 1 0.9758 1.9952 3.9068 11 1 0.8470 2.1765 1.4920 12 7 2.0184 -0.6906 -1.1961 13 6 2.1471 -0.0183 -2.3571 14 8 1.8585 1.1610 -2.4116 15 6 2.6402 -0.7164 -3.5661 16 7 2.9593 -2.0035 -3.4990 17 6 3.3962 -2.6618 -4.5495 18 6 3.5513 -2.0280 -5.7740 19 35 4.1874 -2.9894 -7.2730 20 6 3.2350 -0.6830 -5.8879 21 6 2.7708 -0.0154 -4.7641 22 35 2.3234 1.8196 -4.8551 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 0.5139 0.8900 26 1 1.9026 -0.5283 4.4376 27 1 2.2490 -1.6317 -1.1525 28 1 3.6416 -3.7095 -4.4572 29 1 3.3466 -0.1671 -6.8301 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097135154.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:28 Heat of formation + Delta-G solvation = 6.142872 kcal Electronic energy + Delta-G solvation = -17714.129349 eV Core-core repulsion = 14537.010515 eV Total energy + Delta-G solvation = -3177.118834 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 375.916 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.92424 -40.14849 -36.93786 -34.90367 -34.24672 -34.09060 -31.97319 -31.16979 -30.42270 -27.23165 -25.88861 -24.64847 -23.08554 -21.47734 -19.92360 -18.36302 -18.31282 -17.32529 -16.75226 -16.45576 -16.40155 -15.81736 -15.24297 -14.94763 -14.76530 -14.62187 -14.11758 -13.73144 -13.41623 -13.25150 -12.79823 -12.58598 -12.49749 -12.19583 -12.09160 -11.75236 -11.52190 -11.29299 -11.10614 -10.86414 -10.66796 -10.19563 -10.01440 -9.82830 -8.36725 -6.43295 -0.96849 -0.34134 0.09382 0.44823 1.29469 1.37449 1.47046 1.50474 2.09219 2.27565 2.42961 2.93323 2.99129 3.37880 3.43523 3.61038 3.71749 4.25672 4.45041 4.48869 4.57734 4.69251 4.90573 4.98664 5.30950 5.41098 5.57304 6.08031 6.27062 6.57291 6.77149 7.13292 7.29279 8.78577 Molecular weight = 375.92amu Principal moments of inertia in cm(-1) A = 0.015689 B = 0.003213 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.277964 B = 8712.236406 C =10286.040130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.243 3.757 3 H 0.032 0.968 4 C -0.534 4.534 5 H 0.053 0.947 6 C 0.028 3.972 7 N -0.933 5.933 8 Si 0.940 3.060 9 H -0.259 1.259 10 H -0.292 1.292 11 H -0.257 1.257 12 N -0.678 5.678 13 C 0.541 3.459 14 O -0.538 6.538 15 C 0.109 3.891 16 N -0.455 5.455 17 C 0.146 3.854 18 C -0.122 4.122 19 Br 0.011 6.989 20 C -0.016 4.016 21 C -0.105 4.105 22 Br 0.010 6.990 23 H 0.062 0.938 24 H 0.050 0.950 25 H 0.044 0.956 26 H 0.270 0.730 27 H 0.410 0.590 28 H 0.208 0.792 29 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.144 -2.945 -27.602 27.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.138 3.862 3 H 0.050 0.950 4 C -0.572 4.572 5 H 0.071 0.929 6 C -0.171 4.171 7 N -0.572 5.572 8 Si 0.767 3.233 9 H -0.185 1.185 10 H -0.220 1.220 11 H -0.182 1.182 12 N -0.327 5.327 13 C 0.325 3.675 14 O -0.416 6.416 15 C -0.030 4.030 16 N -0.166 5.166 17 C -0.016 4.016 18 C -0.205 4.205 19 Br 0.096 6.904 20 C -0.045 4.045 21 C -0.190 4.190 22 Br 0.096 6.904 23 H 0.081 0.919 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.080 0.920 27 H 0.246 0.754 28 H 0.225 0.775 29 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 2.896 -2.178 -27.172 27.412 hybrid contribution -0.171 0.288 0.346 0.482 sum 2.726 -1.890 -26.825 27.030 Atomic orbital electron populations 1.22342 0.97446 1.01715 0.99795 1.18877 0.91429 0.93398 0.82471 0.94997 1.21215 1.32482 1.13596 0.89945 0.92859 1.25577 0.96861 0.99495 0.95212 1.69982 1.46622 1.41934 0.98658 0.85984 0.79683 0.80211 0.77421 1.18495 1.21972 1.18197 1.45976 1.63412 1.14661 1.08629 1.18182 0.79388 0.86546 0.83394 1.90919 1.51214 1.15077 1.84347 1.21088 0.97713 0.90847 0.93390 1.67881 1.10146 1.06653 1.31942 1.23615 0.90957 1.01692 0.85321 1.23345 1.05004 0.95842 0.96310 1.96858 1.85930 1.72544 1.35098 1.21853 0.91751 0.92465 0.98456 1.23011 1.04761 0.95395 0.95802 1.96828 1.91780 1.03729 1.98025 0.91888 0.93096 0.93754 0.92030 0.75432 0.77546 0.79607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.74 8.96 71.98 0.65 -6.09 15 2 C 0.24 11.61 2.15 44.25 0.10 11.70 15 3 H 0.03 1.67 6.63 -2.39 -0.02 1.65 15 4 C -0.53 -29.53 9.31 25.60 0.24 -29.29 15 5 H 0.05 3.17 7.98 -2.91 -0.02 3.15 15 6 C 0.03 1.61 5.45 84.65 0.46 2.07 15 7 N -0.93 -56.24 13.96 21.45 0.30 -55.94 15 8 Si 0.94 44.52 24.37 68.60 1.67 46.19 15 9 H -0.26 -11.52 6.87 99.48 0.68 -10.84 15 10 H -0.29 -13.67 7.11 99.48 0.71 -12.97 15 11 H -0.26 -11.97 6.53 99.48 0.65 -11.32 15 12 N -0.68 -28.17 5.06 -448.76 -2.27 -30.44 15 13 C 0.54 20.95 7.76 86.85 0.67 21.63 15 14 O -0.54 -22.76 13.11 -3.81 -0.05 -22.81 15 15 C 0.11 3.37 6.75 41.89 0.28 3.66 15 16 N -0.45 -12.28 9.54 -184.79 -1.76 -14.04 15 17 C 0.15 2.76 10.94 84.88 0.93 3.69 15 18 C -0.12 -2.00 6.26 22.49 0.14 -1.86 15 19 Br 0.01 0.13 33.73 -20.37 -0.69 -0.56 15 20 C -0.02 -0.30 9.70 22.48 0.22 -0.08 15 21 C -0.11 -2.72 6.28 22.67 0.14 -2.57 15 22 Br 0.01 0.28 30.41 -20.37 -0.62 -0.34 15 23 H 0.06 2.59 8.14 -2.39 -0.02 2.57 15 24 H 0.05 2.06 8.14 -2.39 -0.02 2.04 15 25 H 0.04 1.95 3.27 -2.38 -0.01 1.95 15 26 H 0.27 15.26 8.31 -92.71 -0.77 14.49 15 27 H 0.41 16.08 7.87 -92.71 -0.73 15.35 15 28 H 0.21 2.52 8.06 -2.91 -0.02 2.49 15 29 H 0.19 2.27 8.06 -2.91 -0.02 2.25 15 Total: -1.00 -65.10 290.70 0.82 -64.28 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: 0.41 Total: 10.81 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: 3.83 Total: 2.85 kcal Atomic # 7 Polarization: -96.69 SS G_CDS: -3.73 Total: -100.43 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.05 Total: -22.81 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 1.67 Total: 46.19 kcal Atomic # 35 Polarization: 0.41 SS G_CDS: -1.31 Total: -0.89 kcal Total: -65.10 0.82 -64.28 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097135154.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.427 kcal (2) G-P(sol) polarization free energy of solvation -65.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds