Wall clock time and date at job start Tue Mar 31 2020 06:04:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86809 * 119.99679 * 2 1 4 4 H 1.48502 * 109.46700 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46850 * 299.99869 * 3 2 1 6 6 H 1.48498 * 109.47161 * 59.99982 * 3 2 1 7 7 C 1.38807 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99912 * 163.06010 * 7 2 1 9 9 N 1.36937 * 120.00357 * 343.06500 * 7 2 1 10 10 C 1.46932 * 120.62608 * 331.84169 * 9 7 2 11 11 C 1.53194 * 108.77172 * 233.63036 * 10 9 7 12 12 C 1.53042 * 109.31148 * 305.36249 * 11 10 9 13 13 C 1.53001 * 109.45694 * 181.38482 * 12 11 10 14 14 N 1.46504 * 109.46893 * 174.97103 * 13 12 11 15 15 S 1.65598 * 120.00006 * 164.99948 * 14 13 12 16 16 O 1.42099 * 106.40337 * 178.54094 * 15 14 13 17 17 O 1.42092 * 106.40458 * 311.46425 * 15 14 13 18 18 C 1.76203 * 107.21580 * 65.00462 * 15 14 13 19 19 C 1.38463 * 120.01905 * 90.00173 * 18 15 14 20 20 F 1.35103 * 120.01839 * 359.97438 * 19 18 15 21 21 C 1.38448 * 119.95860 * 179.97438 * 19 18 15 22 22 C 1.38223 * 120.00245 * 359.97438 * 21 19 18 23 23 C 1.38205 * 120.03688 * 0.02562 * 22 21 19 24 24 C 1.38297 * 120.01903 * 269.72115 * 18 15 14 25 25 Cl 1.73599 * 119.99787 * 0.02562 * 24 18 15 26 26 C 1.53040 * 109.52710 * 61.37355 * 12 11 10 27 27 C 1.46923 * 120.63456 * 151.85902 * 9 7 2 28 28 H 0.96998 * 120.00471 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.58832 * 113.84046 * 10 9 7 30 30 H 1.09002 * 109.70557 * 353.48161 * 10 9 7 31 31 H 1.09000 * 109.49831 * 185.41459 * 11 10 9 32 32 H 1.08997 * 109.52879 * 65.33238 * 11 10 9 33 33 H 1.08996 * 109.46226 * 301.35910 * 12 11 10 34 34 H 1.09005 * 109.47155 * 54.97842 * 13 12 11 35 35 H 1.08995 * 109.47510 * 294.96927 * 13 12 11 36 36 H 0.97002 * 120.00181 * 345.00851 * 14 13 12 37 37 H 1.08000 * 119.99342 * 179.97438 * 21 19 18 38 38 H 1.08001 * 119.98179 * 180.02562 * 22 21 19 39 39 H 1.08001 * 119.97541 * 179.97438 * 23 22 21 40 40 H 1.09002 * 109.49644 * 58.57557 * 26 12 11 41 41 H 1.09000 * 109.49921 * 178.67078 * 26 12 11 42 42 H 1.08997 * 109.58612 * 246.15607 * 27 9 7 43 43 H 1.09000 * 109.58292 * 6.44169 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0551 -1.2224 -0.2720 9 7 1.3702 -2.3622 0.3465 10 6 0.2264 -2.3397 1.2685 11 6 0.4986 -3.3179 2.4156 12 6 0.8136 -4.6998 1.8384 13 6 1.0521 -5.6876 2.9822 14 7 1.2349 -7.0341 2.4345 15 16 1.8716 -8.2339 3.3817 16 8 1.8878 -9.4094 2.5834 17 8 3.0359 -7.6906 3.9887 18 6 0.7245 -8.5334 4.6852 19 6 -0.2772 -9.4756 4.5235 20 9 -0.3758 -10.1655 3.3661 21 6 -1.1775 -9.7104 5.5487 22 6 -1.0759 -9.0048 6.7329 23 6 -0.0761 -8.0643 6.8942 24 6 0.8276 -7.8317 5.8724 25 17 2.0871 -6.6549 6.0785 26 6 2.0688 -4.6162 0.9669 27 6 1.8144 -3.6530 -0.1968 28 1 -0.4851 0.8400 0.0004 29 1 -0.6767 -2.6411 0.7377 30 1 0.0967 -1.3342 1.6687 31 1 -0.3818 -3.3828 3.0550 32 1 1.3480 -2.9658 3.0008 33 1 -0.0265 -5.0408 1.2333 34 1 0.1926 -5.6817 3.6526 35 1 1.9454 -5.3956 3.5342 36 1 0.9830 -7.2227 1.5169 37 1 -1.9593 -10.4449 5.4231 38 1 -1.7782 -9.1884 7.5326 39 1 0.0021 -7.5132 7.8198 40 1 2.9036 -4.2514 1.5654 41 1 2.3063 -5.6052 0.5751 42 1 1.0408 -4.0614 -0.8470 43 1 2.7336 -3.5130 -0.7658 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097147117.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:19 Heat of formation + Delta-G solvation = -68.497862 kcal Electronic energy + Delta-G solvation = -30531.218952 eV Core-core repulsion = 26065.801509 eV Total energy + Delta-G solvation = -4465.417443 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 376.081 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -49.59221 -39.65687 -38.17927 -37.40561 -36.86093 -35.98128 -35.30180 -32.69022 -31.92046 -31.07728 -30.64824 -29.62618 -26.53170 -24.21772 -23.92378 -23.49628 -22.13650 -21.16892 -19.96080 -19.21020 -18.64970 -17.81988 -17.41481 -17.33290 -16.65876 -16.24466 -15.97509 -15.65490 -15.25381 -14.88981 -14.70480 -14.37801 -14.09298 -13.89882 -13.82102 -13.48804 -13.18660 -13.10797 -12.82799 -12.63825 -12.48111 -12.36318 -12.20410 -12.08399 -11.89683 -11.77916 -11.51207 -11.33246 -10.98451 -10.72631 -10.71668 -10.47869 -10.22605 -10.19087 -10.08445 -9.87964 -9.70563 -9.45261 -9.37831 -9.31563 -8.45820 -6.64722 -5.77549 -3.19532 -0.12526 0.22159 0.36151 1.44464 2.53654 2.86691 3.37953 3.46112 3.48249 3.48646 3.51312 3.78214 4.10944 4.46375 4.51341 4.55161 4.65184 4.93508 4.96357 5.15832 5.18800 5.25647 5.35418 5.41078 5.46303 5.48334 5.64754 5.83385 5.90376 5.97789 6.08024 6.19990 6.34862 6.53063 6.60728 6.68886 6.78380 6.85181 6.87346 7.03195 7.37765 7.66455 7.81900 8.47096 9.23513 9.87069 10.43826 11.30978 Molecular weight = 376.08amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.002468 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.237070 B =11344.494880 C =11711.804862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.249 4.249 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.172 3.828 11 C -0.135 4.135 12 C -0.082 4.082 13 C 0.118 3.882 14 N -1.105 6.105 15 S 2.689 3.311 16 O -0.949 6.949 17 O -0.931 6.931 18 C -0.720 4.720 19 C 0.213 3.787 20 F -0.105 7.105 21 C -0.174 4.174 22 C -0.025 4.025 23 C -0.144 4.144 24 C 0.074 3.926 25 Cl -0.004 7.004 26 C -0.129 4.129 27 C 0.145 3.855 28 H 0.252 0.748 29 H 0.017 0.983 30 H 0.088 0.912 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.421 0.579 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.150 0.850 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.016 0.984 43 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.023 -20.370 15.802 26.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.379 4.379 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.046 3.954 11 C -0.175 4.175 12 C -0.103 4.103 13 C -0.007 4.007 14 N -0.867 5.867 15 S 2.773 3.227 16 O -0.939 6.939 17 O -0.921 6.921 18 C -0.804 4.804 19 C 0.192 3.808 20 F -0.083 7.083 21 C -0.194 4.194 22 C -0.043 4.043 23 C -0.163 4.163 24 C 0.046 3.954 25 Cl 0.025 6.975 26 C -0.168 4.168 27 C 0.018 3.982 28 H 0.062 0.938 29 H 0.035 0.965 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.257 0.743 37 H 0.169 0.831 38 H 0.169 0.831 39 H 0.168 0.832 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.034 0.966 43 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.183 -20.530 15.861 26.137 hybrid contribution -0.472 0.800 -0.099 0.934 sum -3.654 -19.730 15.762 25.516 Atomic orbital electron populations 1.70039 1.05237 1.25307 1.54272 1.25035 0.95281 0.98380 1.01045 0.86245 0.79434 0.84027 0.77229 1.20253 1.21792 1.21591 1.19237 0.92576 0.84845 1.41233 0.91693 1.44064 1.35890 1.01560 1.50054 1.20747 0.88636 0.98101 0.87894 1.22223 1.00279 0.94838 1.00169 1.21252 0.99038 0.94841 0.95135 1.21633 1.01383 0.80367 0.97332 1.55451 1.83470 1.22478 1.25327 1.02333 0.74061 0.73163 0.73132 1.93633 1.86343 1.46560 1.67363 1.93705 1.42841 1.78471 1.77052 1.31000 1.20489 1.10405 1.18533 1.16928 0.92670 0.88603 0.82644 1.91697 1.94956 1.76355 1.45325 1.21391 1.00875 1.03625 0.93495 1.21312 0.95346 0.91344 0.96314 1.21319 0.95215 1.00404 0.99378 1.20428 0.91235 0.90818 0.92923 1.98519 1.48117 1.53965 1.96865 1.22078 0.96930 0.99033 0.98786 1.20906 0.97557 0.86931 0.92792 0.93758 0.96496 0.89432 0.93167 0.92289 0.91116 0.92394 0.90052 0.74312 0.83103 0.83135 0.83200 0.91992 0.93048 0.96594 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.99 11.19 55.49 0.62 -25.37 16 2 C 0.00 0.02 4.92 -17.43 -0.09 -0.06 16 3 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 7 C -0.25 -6.81 9.58 -15.06 -0.14 -6.96 16 8 H 0.07 1.76 7.88 -52.49 -0.41 1.35 16 9 N -0.59 -14.64 2.99 -172.32 -0.52 -15.16 16 10 C 0.17 3.97 5.30 -3.71 -0.02 3.95 16 11 C -0.13 -2.40 5.36 -26.61 -0.14 -2.54 16 12 C -0.08 -1.27 2.18 -90.58 -0.20 -1.46 16 13 C 0.12 1.50 5.40 -4.04 -0.02 1.48 16 14 N -1.10 -12.94 5.51 -10.61 -0.06 -13.00 16 15 S 2.69 34.21 5.52 -107.50 -0.59 33.62 16 16 O -0.95 -14.18 16.20 -57.17 -0.93 -15.11 16 17 O -0.93 -13.56 14.21 -57.17 -0.81 -14.38 16 18 C -0.72 -7.86 5.96 -39.48 -0.24 -8.09 16 19 C 0.21 2.12 7.21 -39.42 -0.28 1.84 16 20 F -0.11 -1.21 15.35 2.25 0.03 -1.18 16 21 C -0.17 -1.18 10.03 -39.51 -0.40 -1.58 16 22 C -0.02 -0.13 10.04 -39.60 -0.40 -0.53 16 23 C -0.14 -0.98 9.83 -39.54 -0.39 -1.37 16 24 C 0.07 0.73 6.30 -39.51 -0.25 0.48 16 25 Cl 0.00 -0.05 24.87 -51.86 -1.29 -1.34 16 26 C -0.13 -2.17 5.26 -26.61 -0.14 -2.31 16 27 C 0.14 2.98 6.52 -3.71 -0.02 2.96 16 28 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 29 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 2.28 6.06 -51.93 -0.31 1.96 16 31 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 1.08 7.28 -51.93 -0.38 0.70 16 36 H 0.42 4.39 8.37 -34.47 -0.29 4.11 16 37 H 0.15 0.63 8.06 -52.49 -0.42 0.21 16 38 H 0.15 0.26 8.06 -52.49 -0.42 -0.17 16 39 H 0.15 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.05 0.75 7.50 -51.93 -0.39 0.36 16 42 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.05 1.10 7.93 -51.93 -0.41 0.69 16 LS Contribution 375.13 15.07 5.65 5.65 Total: -1.00 -33.40 375.13 -11.20 -44.61 By element: Atomic # 1 Polarization: 4.79 SS G_CDS: -5.56 Total: -0.77 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -2.73 Total: -14.19 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.05 Total: -53.53 kcal Atomic # 8 Polarization: -27.74 SS G_CDS: -1.74 Total: -29.48 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.03 Total: -1.18 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Atomic # 16 Polarization: 34.21 SS G_CDS: -0.59 Total: 33.62 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.29 Total: -1.34 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.40 -11.20 -44.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097147117.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.893 kcal (2) G-P(sol) polarization free energy of solvation -33.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds