Wall clock time and date at job start Tue Mar 31 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86809 * 119.99679 * 2 1 4 4 H 1.48502 * 109.46700 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.46850 * 299.99869 * 3 2 1 6 6 H 1.48498 * 109.47161 * 59.99982 * 3 2 1 7 7 C 1.38807 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99912 * 163.06010 * 7 2 1 9 9 N 1.36937 * 120.00357 * 343.06500 * 7 2 1 10 10 C 1.46932 * 120.62608 * 331.84169 * 9 7 2 11 11 C 1.53194 * 108.77172 * 233.63036 * 10 9 7 12 12 C 1.53042 * 109.31148 * 305.36249 * 11 10 9 13 13 C 1.53001 * 109.45694 * 181.38482 * 12 11 10 14 14 N 1.46504 * 109.46893 * 174.97103 * 13 12 11 15 15 S 1.65598 * 120.00006 * 164.99948 * 14 13 12 16 16 O 1.42099 * 106.40337 * 178.54094 * 15 14 13 17 17 O 1.42092 * 106.40458 * 311.46425 * 15 14 13 18 18 C 1.76203 * 107.21580 * 65.00462 * 15 14 13 19 19 C 1.38463 * 120.01905 * 90.00173 * 18 15 14 20 20 F 1.35103 * 120.01839 * 359.97438 * 19 18 15 21 21 C 1.38448 * 119.95860 * 179.97438 * 19 18 15 22 22 C 1.38223 * 120.00245 * 359.97438 * 21 19 18 23 23 C 1.38205 * 120.03688 * 0.02562 * 22 21 19 24 24 C 1.38297 * 120.01903 * 269.72115 * 18 15 14 25 25 Cl 1.73599 * 119.99787 * 0.02562 * 24 18 15 26 26 C 1.53040 * 109.52710 * 61.37355 * 12 11 10 27 27 C 1.46923 * 120.63456 * 151.85902 * 9 7 2 28 28 H 0.96998 * 120.00471 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.58832 * 113.84046 * 10 9 7 30 30 H 1.09002 * 109.70557 * 353.48161 * 10 9 7 31 31 H 1.09000 * 109.49831 * 185.41459 * 11 10 9 32 32 H 1.08997 * 109.52879 * 65.33238 * 11 10 9 33 33 H 1.08996 * 109.46226 * 301.35910 * 12 11 10 34 34 H 1.09005 * 109.47155 * 54.97842 * 13 12 11 35 35 H 1.08995 * 109.47510 * 294.96927 * 13 12 11 36 36 H 0.97002 * 120.00181 * 345.00851 * 14 13 12 37 37 H 1.08000 * 119.99342 * 179.97438 * 21 19 18 38 38 H 1.08001 * 119.98179 * 180.02562 * 22 21 19 39 39 H 1.08001 * 119.97541 * 179.97438 * 23 22 21 40 40 H 1.09002 * 109.49644 * 58.57557 * 26 12 11 41 41 H 1.09000 * 109.49921 * 178.67078 * 26 12 11 42 42 H 1.08997 * 109.58612 * 246.15607 * 27 9 7 43 43 H 1.09000 * 109.58292 * 6.44169 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0551 -1.2224 -0.2720 9 7 1.3702 -2.3622 0.3465 10 6 0.2264 -2.3397 1.2685 11 6 0.4986 -3.3179 2.4156 12 6 0.8136 -4.6998 1.8384 13 6 1.0521 -5.6876 2.9822 14 7 1.2349 -7.0341 2.4345 15 16 1.8716 -8.2339 3.3817 16 8 1.8878 -9.4094 2.5834 17 8 3.0359 -7.6906 3.9887 18 6 0.7245 -8.5334 4.6852 19 6 -0.2772 -9.4756 4.5235 20 9 -0.3758 -10.1655 3.3661 21 6 -1.1775 -9.7104 5.5487 22 6 -1.0759 -9.0048 6.7329 23 6 -0.0761 -8.0643 6.8942 24 6 0.8276 -7.8317 5.8724 25 17 2.0871 -6.6549 6.0785 26 6 2.0688 -4.6162 0.9669 27 6 1.8144 -3.6530 -0.1968 28 1 -0.4851 0.8400 0.0004 29 1 -0.6767 -2.6411 0.7377 30 1 0.0967 -1.3342 1.6687 31 1 -0.3818 -3.3828 3.0550 32 1 1.3480 -2.9658 3.0008 33 1 -0.0265 -5.0408 1.2333 34 1 0.1926 -5.6817 3.6526 35 1 1.9454 -5.3956 3.5342 36 1 0.9830 -7.2227 1.5169 37 1 -1.9593 -10.4449 5.4231 38 1 -1.7782 -9.1884 7.5326 39 1 0.0021 -7.5132 7.8198 40 1 2.9036 -4.2514 1.5654 41 1 2.3063 -5.6052 0.5751 42 1 1.0408 -4.0614 -0.8470 43 1 2.7336 -3.5130 -0.7658 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097147117.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:18 Heat of formation + Delta-G solvation = -90.507560 kcal Electronic energy + Delta-G solvation = -30532.173364 eV Core-core repulsion = 26065.801509 eV Total energy + Delta-G solvation = -4466.371855 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 376.081 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -50.32935 -40.24877 -39.63697 -38.42527 -37.61654 -37.03332 -36.72256 -34.37212 -32.53073 -32.33952 -31.64959 -31.30898 -28.11877 -25.59821 -24.82131 -24.12048 -23.74112 -22.70118 -21.01740 -20.55463 -19.51557 -18.87155 -18.43624 -18.16951 -18.07904 -17.15065 -16.90856 -16.71747 -16.26603 -15.93280 -15.76327 -15.70688 -15.40979 -15.27614 -14.82033 -14.76422 -14.54262 -14.26407 -13.91839 -13.71630 -13.67472 -13.47177 -13.26437 -13.21910 -13.03694 -13.00354 -12.78540 -12.57983 -12.52737 -12.33460 -12.23401 -11.95954 -11.81508 -11.55839 -11.50655 -11.16525 -11.11225 -10.69933 -10.52464 -10.49603 -9.93495 -8.64788 -7.85980 -5.30744 -0.88038 -0.59341 -0.21615 0.75790 1.45881 1.48049 1.58492 1.80559 2.12608 2.52234 2.57429 2.86216 3.04136 3.28146 3.65925 3.71999 3.74843 3.81660 3.96863 4.03076 4.08064 4.08820 4.39703 4.40856 4.56111 4.57665 4.69125 4.69339 4.77509 4.85506 4.88523 4.98183 5.00572 5.08516 5.23445 5.32252 5.33531 5.44774 5.47659 5.57677 5.68389 5.82556 5.98132 6.41722 7.17808 7.89756 8.40513 9.20058 Molecular weight = 376.08amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.002468 C = 0.002390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.237070 B =11344.494880 C =11711.804862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.050 4.050 3 Si 0.964 3.036 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.288 1.288 7 C -0.261 4.261 8 H 0.061 0.939 9 N -0.612 5.612 10 C 0.177 3.823 11 C -0.123 4.123 12 C -0.076 4.076 13 C 0.128 3.872 14 N -1.102 6.102 15 S 2.699 3.301 16 O -0.978 6.978 17 O -0.956 6.956 18 C -0.732 4.732 19 C 0.187 3.813 20 F -0.122 7.122 21 C -0.165 4.165 22 C -0.006 4.006 23 C -0.137 4.137 24 C 0.057 3.943 25 Cl -0.026 7.026 26 C -0.120 4.120 27 C 0.140 3.860 28 H 0.250 0.750 29 H -0.002 1.002 30 H 0.052 0.948 31 H 0.077 0.923 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.427 0.573 37 H 0.180 0.820 38 H 0.198 0.802 39 H 0.176 0.824 40 H 0.052 0.948 41 H 0.078 0.922 42 H 0.016 0.984 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.235 -21.846 18.216 28.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.245 4.245 3 Si 0.792 3.208 4 H -0.194 1.194 5 H -0.220 1.220 6 H -0.215 1.215 7 C -0.392 4.392 8 H 0.079 0.921 9 N -0.336 5.336 10 C 0.051 3.949 11 C -0.163 4.163 12 C -0.096 4.096 13 C 0.002 3.998 14 N -0.865 5.865 15 S 2.787 3.213 16 O -0.968 6.968 17 O -0.946 6.946 18 C -0.820 4.820 19 C 0.166 3.834 20 F -0.100 7.100 21 C -0.185 4.185 22 C -0.024 4.024 23 C -0.156 4.156 24 C 0.028 3.972 25 Cl 0.004 6.996 26 C -0.159 4.159 27 C 0.014 3.986 28 H 0.059 0.941 29 H 0.016 0.984 30 H 0.071 0.929 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.095 0.905 36 H 0.264 0.736 37 H 0.197 0.803 38 H 0.215 0.785 39 H 0.194 0.806 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.034 0.966 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.356 -22.027 18.241 28.929 hybrid contribution -0.185 1.180 -0.805 1.441 sum -4.541 -20.847 17.436 27.554 Atomic orbital electron populations 1.70180 1.06506 1.25699 1.55562 1.25750 0.96064 1.01306 1.01400 0.85258 0.78555 0.80092 0.76846 1.19424 1.21950 1.21452 1.19516 0.92700 0.86242 1.40709 0.92078 1.44350 1.36104 1.02226 1.50930 1.20591 0.87621 0.97674 0.89008 1.22017 1.01281 0.94734 0.98263 1.21137 0.98428 0.94192 0.95837 1.21470 1.02234 0.79843 0.96256 1.55282 1.83495 1.21933 1.25802 1.01638 0.74053 0.72517 0.73105 1.93592 1.87007 1.47618 1.68613 1.93674 1.44805 1.78712 1.77403 1.30555 1.21007 1.12156 1.18258 1.17289 0.93768 0.89111 0.83235 1.91655 1.95135 1.76760 1.46431 1.21834 1.00209 1.03653 0.92764 1.21890 0.94777 0.89141 0.96583 1.21754 0.94255 1.00334 0.99293 1.20593 0.91838 0.91110 0.93637 1.98509 1.49393 1.54848 1.96888 1.21963 0.97436 0.99105 0.97437 1.21058 0.97064 0.86177 0.94284 0.94123 0.98405 0.92916 0.90435 0.92849 0.90352 0.90110 0.90526 0.73614 0.80272 0.78492 0.80626 0.92943 0.90397 0.96607 0.93408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.12 11.19 21.65 0.24 -54.87 16 2 C -0.05 -2.80 4.92 84.86 0.42 -2.39 16 3 Si 0.96 45.26 29.59 68.60 2.03 47.29 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 6 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 7 C -0.26 -14.59 9.58 84.03 0.81 -13.78 16 8 H 0.06 3.38 7.88 -2.91 -0.02 3.35 16 9 N -0.61 -30.87 2.99 -699.10 -2.09 -32.96 16 10 C 0.18 8.32 5.30 86.36 0.46 8.78 16 11 C -0.12 -4.28 5.36 30.67 0.16 -4.12 16 12 C -0.08 -2.22 2.18 -10.77 -0.02 -2.25 16 13 C 0.13 3.02 5.40 86.38 0.47 3.49 16 14 N -1.10 -24.60 5.51 -187.48 -1.03 -25.64 16 15 S 2.70 67.80 5.52 -56.49 -0.31 67.49 16 16 O -0.98 -29.50 16.20 -128.00 -2.07 -31.58 16 17 O -0.96 -27.91 14.21 -128.00 -1.82 -29.73 16 18 C -0.73 -14.97 5.96 22.34 0.13 -14.84 16 19 C 0.19 3.38 7.21 22.37 0.16 3.55 16 20 F -0.12 -2.70 15.35 44.97 0.69 -2.01 16 21 C -0.17 -1.59 10.03 22.32 0.22 -1.37 16 22 C -0.01 -0.03 10.04 22.26 0.22 0.19 16 23 C -0.14 -1.34 9.83 22.29 0.22 -1.12 16 24 C 0.06 0.99 6.30 22.32 0.14 1.14 16 25 Cl -0.03 -0.55 24.87 -2.72 -0.07 -0.62 16 26 C -0.12 -3.96 5.26 30.67 0.16 -3.80 16 27 C 0.14 5.80 6.52 86.36 0.56 6.37 16 28 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 29 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 30 H 0.05 2.83 6.06 -2.39 -0.01 2.82 16 31 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 35 H 0.08 1.94 7.28 -2.39 -0.02 1.92 16 36 H 0.43 8.42 8.37 -96.75 -0.81 7.61 16 37 H 0.18 0.66 8.06 -2.91 -0.02 0.64 16 38 H 0.20 -0.72 8.06 -2.91 -0.02 -0.74 16 39 H 0.18 0.77 8.06 -2.91 -0.02 0.75 16 40 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.08 2.15 7.50 -2.39 -0.02 2.13 16 42 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 Total: -1.00 -75.67 375.13 -0.08 -75.75 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 0.24 Total: 7.03 kcal Atomic # 6 Polarization: -24.26 SS G_CDS: 4.11 Total: -20.15 kcal Atomic # 7 Polarization: -110.59 SS G_CDS: -2.88 Total: -113.47 kcal Atomic # 8 Polarization: -57.41 SS G_CDS: -3.89 Total: -61.30 kcal Atomic # 9 Polarization: -2.70 SS G_CDS: 0.69 Total: -2.01 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Atomic # 16 Polarization: 67.80 SS G_CDS: -0.31 Total: 67.49 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.07 Total: -0.62 kcal Total: -75.67 -0.08 -75.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097147117.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.758 kcal (2) G-P(sol) polarization free energy of solvation -75.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds