Wall clock time and date at job start Tue Mar 31 2020 05:25:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00188 * 2 1 4 4 H 1.48498 * 109.47128 * 240.00316 * 3 2 1 5 5 H 1.48495 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46817 * 120.00694 * 3 2 1 7 7 C 1.37881 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99777 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99588 * 359.97438 * 7 2 1 10 10 N 1.46510 * 109.46809 * 180.02562 * 9 7 2 11 11 N 1.40064 * 125.86980 * 270.28635 * 10 9 7 12 12 C 1.30249 * 109.69101 * 180.12038 * 11 10 9 13 13 C 1.41168 * 108.46928 * 359.63725 * 12 11 10 14 14 C 1.36308 * 125.87260 * 90.00139 * 10 9 7 15 15 N 1.33199 * 134.61923 * 0.07553 * 14 10 9 16 16 C 1.31510 * 120.68256 * 179.97438 * 15 14 10 17 17 N 1.32123 * 122.64648 * 0.02562 * 16 15 14 18 18 C 1.32858 * 121.19451 * 0.02562 * 17 16 15 19 19 N 1.38107 * 120.81448 * 180.02562 * 18 17 16 20 20 C 1.46503 * 119.99962 * 359.97323 * 19 18 17 21 21 C 1.50700 * 109.46956 * 180.02562 * 20 19 18 22 22 C 1.38350 * 119.85975 * 269.72376 * 21 20 19 23 23 C 1.37976 * 120.13307 * 179.76624 * 22 21 20 24 24 C 1.39504 * 119.86216 * 0.53385 * 23 22 21 25 25 C 1.47976 * 120.13611 * 179.74384 * 24 23 22 26 26 C 1.36624 * 126.33994 * 359.69343 * 25 24 23 27 27 C 1.39506 * 107.84933 * 179.84631 * 26 25 24 28 28 N 1.30885 * 108.59366 * 0.42245 * 27 26 25 29 29 N 1.36300 * 126.33736 * 180.02562 * 25 24 23 30 30 H 0.97003 * 126.13616 * 359.97438 * 29 25 24 31 31 C 1.39505 * 119.72467 * 359.72493 * 24 23 22 32 32 C 1.37978 * 119.85827 * 359.97438 * 31 24 23 33 33 H 0.97001 * 119.99480 * 359.97438 * 1 2 3 34 34 H 1.08997 * 109.47701 * 60.00432 * 9 7 2 35 35 H 1.08996 * 109.47415 * 299.99946 * 9 7 2 36 36 H 1.08002 * 125.76682 * 179.90918 * 12 11 10 37 37 H 1.08001 * 118.67359 * 180.02562 * 16 15 14 38 38 H 0.97007 * 120.00145 * 179.97438 * 19 18 17 39 39 H 1.08999 * 109.47253 * 300.00618 * 20 19 18 40 40 H 1.09004 * 109.46630 * 60.00454 * 20 19 18 41 41 H 1.07989 * 119.93253 * 0.02562 * 22 21 20 42 42 H 1.08003 * 120.07066 * 180.25329 * 23 22 21 43 43 H 1.07998 * 126.07773 * 359.97438 * 26 25 24 44 44 H 1.07999 * 125.70027 * 180.13124 * 27 26 25 45 45 H 1.08001 * 120.06726 * 180.02562 * 31 24 23 46 46 H 1.08001 * 119.92347 * 179.97438 * 32 31 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 7 2.7406 -4.2328 -1.1355 12 6 3.5501 -5.1865 -0.7726 13 6 3.5864 -5.2297 0.6379 14 6 2.7220 -4.2199 1.1040 15 7 2.5780 -4.0535 2.4177 16 6 3.2307 -4.8171 3.2664 17 7 4.0523 -5.7756 2.8765 18 6 4.2634 -6.0189 1.5876 19 7 5.1235 -7.0232 1.1888 20 6 5.8166 -7.8353 2.1920 21 6 6.6884 -8.8516 1.5005 22 6 6.1772 -10.0986 1.1876 23 6 6.9688 -11.0317 0.5502 24 6 8.2906 -10.7195 0.2313 25 6 9.1467 -11.7177 -0.4472 26 6 8.7808 -12.9816 -0.8152 27 6 9.8806 -13.5843 -1.4263 28 7 10.8763 -12.7347 -1.4250 29 7 10.4482 -11.5487 -0.8151 30 1 10.9819 -10.7501 -0.6794 31 6 8.8017 -9.4623 0.5543 32 6 7.9980 -8.5357 1.1861 33 1 -0.4849 0.8401 0.0004 34 1 0.6240 -2.5567 -0.8903 35 1 0.6246 -2.5570 0.8896 36 1 4.1037 -5.8321 -1.4384 37 1 3.0895 -4.6542 4.3246 38 1 5.2686 -7.1909 0.2444 39 1 6.4355 -7.1910 2.8165 40 1 5.0831 -8.3483 2.8140 41 1 5.1552 -10.3405 1.4390 42 1 6.5675 -12.0034 0.3028 43 1 7.8117 -13.4331 -0.6622 44 1 9.9074 -14.5862 -1.8286 45 1 9.8240 -9.2147 0.3096 46 1 8.3927 -7.5622 1.4370 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199679.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:52 Heat of formation + Delta-G solvation = 216.497976 kcal Electronic energy + Delta-G solvation = -30972.087116 eV Core-core repulsion = 26671.781388 eV Total energy + Delta-G solvation = -4300.305728 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.150 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.64521 -41.40066 -39.76553 -38.44388 -36.44119 -33.94462 -33.39822 -32.19816 -31.90613 -31.30541 -31.16382 -30.21660 -28.94718 -27.30089 -26.05001 -23.96378 -23.48142 -23.43078 -22.83833 -22.11891 -21.58377 -20.64297 -20.13157 -18.71973 -18.02670 -17.41886 -16.70390 -16.56734 -15.99802 -15.80837 -15.71925 -15.18851 -15.10203 -15.00805 -14.61137 -14.51626 -14.21019 -14.14907 -13.78202 -13.76518 -13.73538 -13.36465 -13.15475 -13.04064 -12.82546 -12.15548 -11.83638 -11.65398 -11.59203 -11.21701 -11.19731 -11.00700 -10.97654 -10.76106 -10.49714 -10.29315 -10.10728 -9.86353 -9.69804 -9.51652 -9.28837 -8.75192 -8.60561 -8.56401 -8.24215 -7.66499 -6.22368 -4.29003 0.18137 0.85450 1.28655 1.63550 1.91931 2.29481 2.34129 2.92419 3.01325 3.09032 3.25778 3.28933 3.33741 3.45005 3.90233 4.19727 4.24504 4.30389 4.37175 4.38308 4.39054 4.60208 4.72313 4.73116 4.85214 4.95185 5.04659 5.10625 5.12847 5.15658 5.22968 5.25728 5.42732 5.46832 5.53278 5.59940 5.69934 5.77574 5.92884 6.07986 6.10296 6.28534 6.34470 6.65576 6.71049 6.87050 7.02271 7.09450 7.14184 7.20747 7.47869 7.70885 7.89035 7.91052 8.21390 8.70620 8.80840 9.35986 10.85803 Molecular weight = 375.15amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.001496 C = 0.001456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.852643 B =18713.087282 C =19232.527973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.264 3.736 10 N -0.332 5.332 11 N -0.243 5.243 12 C 0.068 3.932 13 C -0.337 4.337 14 C 0.363 3.637 15 N -0.553 5.553 16 C 0.367 3.633 17 N -0.618 5.618 18 C 0.509 3.491 19 N -0.704 5.704 20 C 0.171 3.829 21 C -0.096 4.096 22 C -0.093 4.093 23 C -0.092 4.092 24 C -0.030 4.030 25 C 0.128 3.872 26 C -0.253 4.253 27 C 0.049 3.951 28 N -0.287 5.287 29 N -0.474 5.474 30 H 0.438 0.562 31 C -0.112 4.112 32 C -0.092 4.092 33 H 0.268 0.732 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.182 0.818 37 H 0.195 0.805 38 H 0.410 0.590 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.152 0.848 44 H 0.187 0.813 45 H 0.120 0.880 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.146 -26.261 2.657 31.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.118 5.118 11 N -0.058 5.058 12 C -0.127 4.127 13 C -0.355 4.355 14 C 0.115 3.885 15 N -0.278 5.278 16 C 0.073 3.927 17 N -0.349 5.349 18 C 0.257 3.743 19 N -0.338 5.338 20 C 0.048 3.952 21 C -0.097 4.097 22 C -0.112 4.112 23 C -0.111 4.111 24 C -0.032 4.032 25 C 0.000 4.000 26 C -0.282 4.282 27 C -0.136 4.136 28 N -0.109 5.109 29 N -0.184 5.184 30 H 0.283 0.717 31 C -0.131 4.131 32 C -0.111 4.111 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.199 0.801 37 H 0.212 0.788 38 H 0.247 0.753 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.151 0.849 42 H 0.151 0.849 43 H 0.170 0.830 44 H 0.203 0.797 45 H 0.138 0.862 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 17.393 -25.048 2.291 30.580 hybrid contribution 0.448 0.650 -0.283 0.839 sum 17.841 -24.398 2.008 30.291 Atomic orbital electron populations 1.69909 1.05998 1.27743 1.49213 1.24891 0.94977 0.99327 0.94411 0.86405 0.79451 0.81891 0.78854 1.20041 1.20863 1.19970 1.21210 0.93511 0.89712 1.52928 0.92114 1.19792 0.85672 0.79826 0.99997 1.49475 1.35696 1.27846 0.98801 1.76948 1.11445 1.08075 1.09376 1.23365 0.99171 0.97826 0.92335 1.19609 1.12574 1.07979 0.95324 1.18937 0.91076 0.89936 0.88520 1.67519 1.29533 1.30758 1.00001 1.24413 0.85150 0.83968 0.99191 1.67935 1.26759 1.25765 1.14464 1.17880 0.84155 0.84056 0.88248 1.44309 1.46263 1.34231 1.09005 1.20170 0.94277 0.90818 0.89937 1.20118 0.94664 0.95271 0.99672 1.21113 1.00127 0.92642 0.97280 1.21147 0.92122 0.99995 0.97814 1.18077 0.93306 0.92316 0.99476 1.19636 0.85607 0.95364 0.99360 1.21489 1.01811 0.94272 1.10638 1.23814 0.90747 0.99880 0.99165 1.77342 1.23177 0.92352 1.18058 1.46626 1.09271 1.14501 1.47987 0.71745 1.21092 0.99782 0.92794 0.99420 1.21046 0.93266 0.99450 0.97330 0.92199 0.92804 0.92233 0.80138 0.78834 0.75343 0.90381 0.90287 0.84881 0.84932 0.83045 0.79656 0.86203 0.85077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.68 13.29 55.43 0.74 -24.94 16 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 3 Si 0.91 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.53 -15.24 9.39 -34.44 -0.32 -15.57 16 8 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 9 C 0.26 7.02 6.19 -5.19 -0.03 6.98 16 10 N -0.33 -7.88 3.63 -61.64 -0.22 -8.10 16 11 N -0.24 -5.14 12.45 30.80 0.38 -4.76 16 12 C 0.07 1.13 11.87 -17.11 -0.20 0.93 16 13 C -0.34 -5.95 6.14 -106.82 -0.66 -6.60 16 14 C 0.36 7.89 8.04 -156.24 -1.26 6.63 16 15 N -0.55 -11.45 10.47 -13.97 -0.15 -11.60 16 16 C 0.37 5.95 12.24 -92.11 -1.13 4.82 16 17 N -0.62 -9.31 9.69 -13.62 -0.13 -9.44 16 18 C 0.51 7.42 7.55 -154.85 -1.17 6.25 16 19 N -0.70 -7.07 5.67 -61.26 -0.35 -7.41 16 20 C 0.17 1.36 5.85 -5.19 -0.03 1.33 16 21 C -0.10 -0.62 5.25 -104.54 -0.55 -1.17 16 22 C -0.09 -0.54 9.68 -39.64 -0.38 -0.93 16 23 C -0.09 -0.52 9.57 -39.21 -0.38 -0.90 16 24 C -0.03 -0.19 5.87 -104.96 -0.62 -0.81 16 25 C 0.13 0.90 6.97 -82.47 -0.58 0.33 16 26 C -0.25 -1.66 10.19 -39.69 -0.40 -2.06 16 27 C 0.05 0.34 11.99 -17.48 -0.21 0.13 16 28 N -0.29 -2.51 12.68 30.56 0.39 -2.12 16 29 N -0.47 -3.38 7.30 33.28 0.24 -3.13 16 30 H 0.44 2.04 8.12 -182.62 -1.48 0.56 16 31 C -0.11 -0.65 9.71 -39.20 -0.38 -1.03 16 32 C -0.09 -0.56 9.68 -39.64 -0.38 -0.95 16 33 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.05 1.48 8.14 -51.93 -0.42 1.05 16 35 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 36 H 0.18 2.04 8.06 -52.49 -0.42 1.62 16 37 H 0.20 2.35 8.06 -52.49 -0.42 1.93 16 38 H 0.41 3.44 8.33 -40.82 -0.34 3.10 16 39 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 40 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 41 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 42 H 0.13 0.53 7.02 -52.48 -0.37 0.16 16 43 H 0.15 0.66 7.28 -52.49 -0.38 0.28 16 44 H 0.19 0.67 8.06 -52.49 -0.42 0.25 16 45 H 0.12 0.47 7.22 -52.49 -0.38 0.09 16 46 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 LS Contribution 404.52 15.07 6.10 6.10 Total: -1.00 -35.35 404.52 -13.09 -48.44 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -6.30 Total: 1.18 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: -8.77 Total: -0.82 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: 0.90 Total: -71.51 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.35 -13.09 -48.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199679.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 264.942 kcal (2) G-P(sol) polarization free energy of solvation -35.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 229.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 216.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds