Wall clock time and date at job start Tue Mar 31 2020 05:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00188 * 2 1 4 4 H 1.48498 * 109.47128 * 240.00316 * 3 2 1 5 5 H 1.48495 * 109.47062 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46817 * 120.00694 * 3 2 1 7 7 C 1.37881 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99777 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99588 * 359.97438 * 7 2 1 10 10 N 1.46510 * 109.46809 * 180.02562 * 9 7 2 11 11 N 1.40064 * 125.86980 * 270.28635 * 10 9 7 12 12 C 1.30249 * 109.69101 * 180.12038 * 11 10 9 13 13 C 1.41168 * 108.46928 * 359.63725 * 12 11 10 14 14 C 1.36308 * 125.87260 * 90.00139 * 10 9 7 15 15 N 1.33199 * 134.61923 * 0.07553 * 14 10 9 16 16 C 1.31510 * 120.68256 * 179.97438 * 15 14 10 17 17 N 1.32123 * 122.64648 * 0.02562 * 16 15 14 18 18 C 1.32858 * 121.19451 * 0.02562 * 17 16 15 19 19 N 1.38107 * 120.81448 * 180.02562 * 18 17 16 20 20 C 1.46503 * 119.99962 * 359.97323 * 19 18 17 21 21 C 1.50700 * 109.46956 * 180.02562 * 20 19 18 22 22 C 1.38350 * 119.85975 * 269.72376 * 21 20 19 23 23 C 1.37976 * 120.13307 * 179.76624 * 22 21 20 24 24 C 1.39504 * 119.86216 * 0.53385 * 23 22 21 25 25 C 1.47976 * 120.13611 * 179.74384 * 24 23 22 26 26 C 1.36624 * 126.33994 * 359.69343 * 25 24 23 27 27 C 1.39506 * 107.84933 * 179.84631 * 26 25 24 28 28 N 1.30885 * 108.59366 * 0.42245 * 27 26 25 29 29 N 1.36300 * 126.33736 * 180.02562 * 25 24 23 30 30 H 0.97003 * 126.13616 * 359.97438 * 29 25 24 31 31 C 1.39505 * 119.72467 * 359.72493 * 24 23 22 32 32 C 1.37978 * 119.85827 * 359.97438 * 31 24 23 33 33 H 0.97001 * 119.99480 * 359.97438 * 1 2 3 34 34 H 1.08997 * 109.47701 * 60.00432 * 9 7 2 35 35 H 1.08996 * 109.47415 * 299.99946 * 9 7 2 36 36 H 1.08002 * 125.76682 * 179.90918 * 12 11 10 37 37 H 1.08001 * 118.67359 * 180.02562 * 16 15 14 38 38 H 0.97007 * 120.00145 * 179.97438 * 19 18 17 39 39 H 1.08999 * 109.47253 * 300.00618 * 20 19 18 40 40 H 1.09004 * 109.46630 * 60.00454 * 20 19 18 41 41 H 1.07989 * 119.93253 * 0.02562 * 22 21 20 42 42 H 1.08003 * 120.07066 * 180.25329 * 23 22 21 43 43 H 1.07998 * 126.07773 * 359.97438 * 26 25 24 44 44 H 1.07999 * 125.70027 * 180.13124 * 27 26 25 45 45 H 1.08001 * 120.06726 * 180.02562 * 31 24 23 46 46 H 1.08001 * 119.92347 * 179.97438 * 32 31 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1031 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 7 2.7406 -4.2328 -1.1355 12 6 3.5501 -5.1865 -0.7726 13 6 3.5864 -5.2297 0.6379 14 6 2.7220 -4.2199 1.1040 15 7 2.5780 -4.0535 2.4177 16 6 3.2307 -4.8171 3.2664 17 7 4.0523 -5.7756 2.8765 18 6 4.2634 -6.0189 1.5876 19 7 5.1235 -7.0232 1.1888 20 6 5.8166 -7.8353 2.1920 21 6 6.6884 -8.8516 1.5005 22 6 6.1772 -10.0986 1.1876 23 6 6.9688 -11.0317 0.5502 24 6 8.2906 -10.7195 0.2313 25 6 9.1467 -11.7177 -0.4472 26 6 8.7808 -12.9816 -0.8152 27 6 9.8806 -13.5843 -1.4263 28 7 10.8763 -12.7347 -1.4250 29 7 10.4482 -11.5487 -0.8151 30 1 10.9819 -10.7501 -0.6794 31 6 8.8017 -9.4623 0.5543 32 6 7.9980 -8.5357 1.1861 33 1 -0.4849 0.8401 0.0004 34 1 0.6240 -2.5567 -0.8903 35 1 0.6246 -2.5570 0.8896 36 1 4.1037 -5.8321 -1.4384 37 1 3.0895 -4.6542 4.3246 38 1 5.2686 -7.1909 0.2444 39 1 6.4355 -7.1910 2.8165 40 1 5.0831 -8.3483 2.8140 41 1 5.1552 -10.3405 1.4390 42 1 6.5675 -12.0034 0.3028 43 1 7.8117 -13.4331 -0.6622 44 1 9.9074 -14.5862 -1.8286 45 1 9.8240 -9.2147 0.3096 46 1 8.3927 -7.5622 1.4370 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097199679.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:51 Heat of formation + Delta-G solvation = 195.230369 kcal Electronic energy + Delta-G solvation = -30973.009349 eV Core-core repulsion = 26671.781388 eV Total energy + Delta-G solvation = -4301.227961 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.150 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.79961 -42.11852 -40.32441 -39.71700 -37.43499 -35.74421 -34.44285 -33.37002 -32.81844 -32.49516 -31.71011 -31.15190 -29.82286 -29.13617 -26.86779 -25.49429 -25.00790 -23.91616 -23.82546 -23.07806 -22.09439 -21.56581 -21.11588 -19.43942 -19.14438 -18.80351 -18.63921 -17.76385 -17.02167 -16.72742 -16.49671 -16.22283 -16.17250 -15.71107 -15.63530 -15.35126 -15.10187 -15.04229 -14.99679 -14.88173 -14.55818 -14.20484 -14.19294 -13.79285 -13.71910 -13.60648 -13.52805 -13.04541 -12.74759 -12.44305 -12.39125 -12.30733 -12.25520 -11.95385 -11.78292 -11.70800 -11.50056 -11.01390 -10.75510 -10.60204 -10.20043 -10.03275 -9.93279 -9.75645 -9.10390 -8.97444 -8.35036 -6.52230 -0.29856 -0.01438 0.43663 0.54803 1.12499 1.33185 1.37518 1.40649 1.49250 1.64863 1.84443 1.86287 2.16562 2.31944 2.90366 2.94666 3.03547 3.28403 3.41925 3.45270 3.65509 3.76021 3.80620 3.86501 3.95798 4.00965 4.11837 4.25479 4.42121 4.44428 4.59119 4.68793 4.72735 4.75537 4.83979 4.87553 4.92115 5.04871 5.10897 5.16179 5.33171 5.47815 5.49870 5.55808 5.60658 5.67480 5.75765 5.78519 5.90491 5.98090 6.13829 6.29245 6.52960 6.59071 6.65973 6.79767 7.17277 7.47511 8.72324 Molecular weight = 375.15amu Principal moments of inertia in cm(-1) A = 0.017663 B = 0.001496 C = 0.001456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.852643 B =18713.087282 C =19232.527973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.021 3.979 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.554 4.554 8 H 0.046 0.954 9 C 0.285 3.715 10 N -0.367 5.367 11 N -0.291 5.291 12 C 0.100 3.900 13 C -0.346 4.346 14 C 0.337 3.663 15 N -0.606 5.606 16 C 0.377 3.623 17 N -0.613 5.613 18 C 0.519 3.481 19 N -0.679 5.679 20 C 0.173 3.827 21 C -0.099 4.099 22 C -0.093 4.093 23 C -0.093 4.093 24 C -0.036 4.036 25 C 0.120 3.880 26 C -0.261 4.261 27 C 0.045 3.955 28 N -0.323 5.323 29 N -0.477 5.477 30 H 0.445 0.555 31 C -0.116 4.116 32 C -0.096 4.096 33 H 0.274 0.726 34 H 0.030 0.970 35 H 0.033 0.967 36 H 0.237 0.763 37 H 0.231 0.769 38 H 0.421 0.579 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.145 0.855 42 H 0.149 0.851 43 H 0.172 0.828 44 H 0.211 0.789 45 H 0.134 0.866 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.253 -28.066 3.048 34.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.592 4.592 8 H 0.064 0.936 9 C 0.166 3.834 10 N -0.153 5.153 11 N -0.106 5.106 12 C -0.095 4.095 13 C -0.364 4.364 14 C 0.090 3.910 15 N -0.333 5.333 16 C 0.084 3.916 17 N -0.344 5.344 18 C 0.265 3.735 19 N -0.311 5.311 20 C 0.051 3.949 21 C -0.100 4.100 22 C -0.112 4.112 23 C -0.112 4.112 24 C -0.038 4.038 25 C -0.008 4.008 26 C -0.290 4.290 27 C -0.140 4.140 28 N -0.146 5.146 29 N -0.188 5.188 30 H 0.290 0.710 31 C -0.135 4.135 32 C -0.114 4.114 33 H 0.083 0.917 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.253 0.747 37 H 0.247 0.753 38 H 0.260 0.740 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.163 0.837 42 H 0.167 0.833 43 H 0.189 0.811 44 H 0.228 0.772 45 H 0.152 0.848 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 19.557 -26.926 2.671 33.386 hybrid contribution -0.063 0.936 -0.313 0.989 sum 19.494 -25.990 2.358 32.574 Atomic orbital electron populations 1.70008 1.07379 1.28950 1.49348 1.25789 0.95897 1.02815 0.93529 0.85369 0.78346 0.77568 0.78949 1.19416 1.19335 1.19610 1.21372 0.92902 0.91234 1.53739 0.93588 1.19101 0.85950 0.80900 0.97409 1.49098 1.37139 1.28629 1.00483 1.76895 1.14128 1.10452 1.09149 1.24244 0.96564 0.95929 0.92738 1.19744 1.12666 1.07838 0.96102 1.19361 0.91925 0.90918 0.88797 1.67531 1.32164 1.33358 1.00270 1.25183 0.83532 0.82727 1.00143 1.68097 1.26544 1.25379 1.14367 1.17966 0.83872 0.84147 0.87515 1.44450 1.44050 1.32266 1.10352 1.20266 0.94359 0.90806 0.89497 1.19960 0.94576 0.95165 1.00326 1.21256 1.00708 0.92318 0.96881 1.21359 0.91804 1.00726 0.97331 1.18193 0.93612 0.92408 0.99596 1.19878 0.85649 0.95861 0.99386 1.21844 1.02654 0.94192 1.10327 1.24332 0.90387 1.00711 0.98572 1.77293 1.24519 0.93321 1.19496 1.46673 1.09544 1.14558 1.47977 0.70962 1.21288 1.00563 0.92574 0.99093 1.21157 0.93210 0.99861 0.97216 0.91695 0.95173 0.94943 0.74660 0.75340 0.74010 0.90346 0.89874 0.83719 0.83314 0.81052 0.77201 0.84811 0.84400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.56 13.29 21.45 0.28 -54.27 16 2 C 0.02 1.18 5.46 84.66 0.46 1.65 16 3 Si 0.97 44.92 29.54 68.60 2.03 46.94 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 7 C -0.55 -33.06 9.39 25.60 0.24 -32.82 16 8 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 9 C 0.29 16.24 6.19 85.63 0.53 16.77 16 10 N -0.37 -18.30 3.63 -348.94 -1.27 -19.56 16 11 N -0.29 -12.59 12.45 -56.46 -0.70 -13.29 16 12 C 0.10 3.17 11.87 85.65 1.02 4.19 16 13 C -0.35 -11.83 6.14 -21.29 -0.13 -11.96 16 14 C 0.34 15.01 8.04 134.15 1.08 16.09 16 15 N -0.61 -25.65 10.47 -198.11 -2.07 -27.72 16 16 C 0.38 11.85 12.24 180.87 2.21 14.07 16 17 N -0.61 -17.15 9.69 -197.01 -1.91 -19.06 16 18 C 0.52 13.92 7.55 133.65 1.01 14.93 16 19 N -0.68 -11.29 5.67 -347.72 -1.97 -13.26 16 20 C 0.17 2.18 5.85 85.63 0.50 2.68 16 21 C -0.10 -0.97 5.25 -19.81 -0.10 -1.07 16 22 C -0.09 -0.78 9.68 22.23 0.22 -0.57 16 23 C -0.09 -0.78 9.57 22.51 0.22 -0.57 16 24 C -0.04 -0.37 5.87 -20.09 -0.12 -0.49 16 25 C 0.12 1.48 6.97 40.66 0.28 1.76 16 26 C -0.26 -2.89 10.19 22.20 0.23 -2.66 16 27 C 0.04 0.54 11.99 85.14 1.02 1.56 16 28 N -0.32 -5.36 12.68 -57.24 -0.73 -6.08 16 29 N -0.48 -6.24 7.30 -48.61 -0.36 -6.60 16 30 H 0.44 3.73 8.12 -213.34 -1.73 1.99 16 31 C -0.12 -1.07 9.71 22.51 0.22 -0.85 16 32 C -0.10 -0.90 9.68 22.23 0.22 -0.68 16 33 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 34 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.03 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.24 4.37 8.06 -2.91 -0.02 4.35 16 37 H 0.23 5.15 8.06 -2.91 -0.02 5.12 16 38 H 0.42 5.34 8.33 -92.70 -0.77 4.57 16 39 H 0.08 1.07 8.08 -2.39 -0.02 1.05 16 40 H 0.08 1.07 8.08 -2.38 -0.02 1.05 16 41 H 0.15 0.87 8.06 -2.92 -0.02 0.84 16 42 H 0.15 0.70 7.02 -2.91 -0.02 0.68 16 43 H 0.17 1.02 7.28 -2.91 -0.02 1.00 16 44 H 0.21 1.11 8.06 -2.91 -0.02 1.09 16 45 H 0.13 0.76 7.22 -2.91 -0.02 0.74 16 46 H 0.14 1.08 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -81.36 404.52 0.96 -80.40 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -1.43 Total: 10.49 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: 9.09 Total: 22.01 kcal Atomic # 7 Polarization: -151.12 SS G_CDS: -8.72 Total: -159.85 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -81.36 0.96 -80.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199679.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 275.629 kcal (2) G-P(sol) polarization free energy of solvation -81.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 195.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds