Wall clock time and date at job start Tue Mar 31 2020 06:37:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00191 * 2 1 4 4 H 1.48500 * 109.46977 * 270.00135 * 3 2 1 5 5 H 1.48500 * 109.46913 * 29.99536 * 3 2 1 6 6 H 1.48495 * 109.47707 * 149.99812 * 3 2 1 7 7 C 1.37884 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99486 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99879 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47049 * 179.97438 * 9 7 2 11 11 N 1.40061 * 125.87858 * 270.00560 * 10 9 7 12 12 C 1.30249 * 109.70033 * 179.97438 * 11 10 9 13 13 C 1.41172 * 108.46775 * 359.97438 * 12 11 10 14 14 C 1.36317 * 125.86984 * 89.99721 * 10 9 7 15 15 N 1.33195 * 134.61795 * 0.02562 * 14 10 9 16 16 C 1.31505 * 120.68851 * 179.97438 * 15 14 10 17 17 N 1.32128 * 122.63936 * 359.66118 * 16 15 14 18 18 C 1.32860 * 121.19611 * 0.64380 * 17 16 15 19 19 N 1.38108 * 120.81232 * 179.69178 * 18 17 16 20 20 C 1.46499 * 120.00012 * 359.71960 * 19 18 17 21 21 C 1.50703 * 109.47183 * 179.97438 * 20 19 18 22 22 C 1.38797 * 120.35579 * 89.99619 * 21 20 19 23 23 C 1.38408 * 118.48465 * 180.02562 * 22 21 20 24 24 C 1.38944 * 119.10946 * 0.02562 * 23 22 21 25 25 N 1.39815 * 119.69345 * 179.97438 * 24 23 22 26 26 C 1.35842 * 126.10768 * 179.97438 * 25 24 23 27 27 C 1.35282 * 107.61411 * 179.74772 * 26 25 24 28 28 C 1.39956 * 107.96951 * 0.37186 * 27 26 25 29 29 N 1.30821 * 108.36748 * 359.62049 * 28 27 26 30 30 N 1.32308 * 120.62069 * 0.27416 * 24 23 22 31 31 C 1.31892 * 121.65026 * 359.43548 * 30 24 23 32 32 H 0.97000 * 119.99994 * 0.02562 * 1 2 3 33 33 H 1.09000 * 109.46845 * 60.00326 * 9 7 2 34 34 H 1.08994 * 109.47514 * 300.00516 * 9 7 2 35 35 H 1.07992 * 125.77126 * 179.97438 * 12 11 10 36 36 H 1.07994 * 118.67596 * 180.02562 * 16 15 14 37 37 H 0.97003 * 119.99669 * 179.71586 * 19 18 17 38 38 H 1.08997 * 109.47178 * 59.99757 * 20 19 18 39 39 H 1.09000 * 109.46912 * 299.99459 * 20 19 18 40 40 H 1.08007 * 120.75579 * 0.04539 * 22 21 20 41 41 H 1.08008 * 120.44532 * 179.97438 * 23 22 21 42 42 H 1.07997 * 126.19457 * 359.97438 * 26 25 24 43 43 H 1.07993 * 126.01832 * 180.25430 * 27 26 25 44 44 H 1.08002 * 125.81889 * 179.89275 * 28 27 26 45 45 H 1.08002 * 119.58292 * 180.29031 * 31 30 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0013 11 7 4.2739 -3.3479 1.1369 12 6 4.6903 -4.5278 0.7752 13 6 4.7077 -4.5829 -0.6354 14 6 4.2657 -3.3295 -1.1026 15 7 4.1922 -3.1234 -2.4164 16 6 4.5270 -4.0712 -3.2643 17 7 4.9542 -5.2588 -2.8733 18 6 5.0564 -5.5632 -1.5841 19 7 5.4979 -6.8092 -1.1843 20 6 5.8544 -7.8164 -2.1867 21 6 6.3021 -9.0778 -1.4942 22 6 5.3816 -10.0652 -1.1712 23 6 5.8351 -11.2077 -0.5351 24 6 7.1882 -11.3267 -0.2426 25 7 7.6594 -12.4755 0.4002 26 6 8.9487 -12.7274 0.7459 27 6 8.9816 -13.9377 1.3495 28 6 7.6781 -14.4468 1.3676 29 7 6.8860 -13.5720 0.8030 30 7 8.0341 -10.3606 -0.5615 31 6 7.6326 -9.2631 -1.1728 32 1 -0.4850 0.8400 -0.0004 33 1 3.8751 -0.6796 0.8895 34 1 3.8745 -0.6807 -0.8904 35 1 4.9742 -5.3288 1.4416 36 1 4.4553 -3.8687 -4.3227 37 1 5.5719 -7.0175 -0.2398 38 1 6.6642 -7.4377 -2.8102 39 1 4.9864 -8.0320 -2.8097 40 1 4.3354 -9.9448 -1.4110 41 1 5.1462 -11.9959 -0.2688 42 1 9.7938 -12.0775 0.5738 43 1 9.8596 -14.4260 1.7458 44 1 7.3766 -15.3977 1.7814 45 1 8.3527 -8.4976 -1.4217 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:49 Heat of formation + Delta-G solvation = 254.086984 kcal Electronic energy + Delta-G solvation = -31240.073702 eV Core-core repulsion = 26875.972045 eV Total energy + Delta-G solvation = -4364.101658 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.146 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.03941 -41.49800 -40.59202 -38.59045 -36.74640 -34.44006 -33.67347 -33.13219 -32.31812 -31.53234 -31.06051 -30.49111 -29.25477 -27.85446 -26.31992 -24.53047 -24.02167 -23.63728 -22.85670 -22.18292 -21.40481 -21.26209 -20.16424 -18.93076 -18.10148 -17.51615 -17.13965 -17.10170 -16.63426 -16.03806 -15.85246 -15.69749 -15.31378 -14.96509 -14.65039 -14.47096 -14.29603 -14.08829 -13.97702 -13.83211 -13.75666 -13.70928 -13.52392 -13.23522 -12.80272 -12.47414 -12.32928 -12.06471 -11.37654 -11.36014 -11.10579 -11.04052 -10.93500 -10.72622 -10.47699 -10.31252 -10.22540 -10.18252 -9.71495 -9.68331 -9.37318 -8.87338 -8.75139 -8.69966 -8.31891 -7.73786 -6.23732 -4.26502 0.05392 0.62285 1.20645 1.52526 1.61422 1.83642 2.27253 2.78562 2.92204 2.97854 3.20010 3.25615 3.27634 3.34286 3.70912 3.97096 4.08704 4.24829 4.27689 4.34619 4.35844 4.48629 4.51356 4.62909 4.63474 4.86784 4.89679 5.03888 5.07927 5.14384 5.14664 5.23988 5.32589 5.40668 5.43329 5.49370 5.62362 5.68168 5.88431 6.02655 6.18551 6.46391 6.49379 6.54757 6.78069 6.83658 6.84493 7.10952 7.28735 7.34313 7.36784 7.74721 8.07767 8.29105 8.69984 8.78284 9.30975 10.88976 Molecular weight = 376.15amu Principal moments of inertia in cm(-1) A = 0.020546 B = 0.001509 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.467112 B =18550.505521 C =19061.332841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.080 3.920 3 Si 0.875 3.125 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.264 1.264 7 C -0.539 4.539 8 H 0.078 0.922 9 C 0.237 3.763 10 N -0.332 5.332 11 N -0.240 5.240 12 C 0.073 3.927 13 C -0.335 4.335 14 C 0.367 3.633 15 N -0.555 5.555 16 C 0.370 3.630 17 N -0.616 5.616 18 C 0.511 3.489 19 N -0.705 5.705 20 C 0.181 3.819 21 C -0.173 4.173 22 C -0.029 4.029 23 C -0.165 4.165 24 C 0.375 3.625 25 N -0.328 5.328 26 C 0.080 3.920 27 C -0.266 4.266 28 C 0.065 3.935 29 N -0.285 5.285 30 N -0.508 5.508 31 C 0.156 3.844 32 H 0.269 0.731 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.184 0.816 36 H 0.197 0.803 37 H 0.410 0.590 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.183 0.817 43 H 0.157 0.843 44 H 0.194 0.806 45 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.798 -26.888 -2.181 32.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.124 4.124 3 Si 0.700 3.300 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.577 4.577 8 H 0.096 0.904 9 C 0.118 3.882 10 N -0.118 5.118 11 N -0.055 5.055 12 C -0.123 4.123 13 C -0.353 4.353 14 C 0.119 3.881 15 N -0.280 5.280 16 C 0.076 3.924 17 N -0.347 5.347 18 C 0.258 3.742 19 N -0.339 5.339 20 C 0.057 3.943 21 C -0.176 4.176 22 C -0.056 4.056 23 C -0.188 4.188 24 C 0.147 3.853 25 N -0.106 5.106 26 C -0.061 4.061 27 C -0.294 4.294 28 C -0.123 4.123 29 N -0.103 5.103 30 N -0.221 5.221 31 C -0.003 4.003 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.200 0.800 36 H 0.213 0.787 37 H 0.246 0.754 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.167 0.833 41 H 0.168 0.832 42 H 0.200 0.800 43 H 0.175 0.825 44 H 0.211 0.789 45 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 17.900 -25.358 -2.335 31.127 hybrid contribution 0.486 -0.040 0.656 0.817 sum 18.387 -25.398 -1.679 31.400 Atomic orbital electron populations 1.69867 1.06171 1.27391 1.48989 1.24767 0.94832 0.98823 0.93957 0.86875 0.80341 0.83616 0.79123 1.19474 1.20509 1.18879 1.21103 0.87877 0.95483 1.53274 0.90407 1.20090 0.96681 0.72455 0.98932 1.48967 1.50452 1.13228 0.99112 1.76954 1.16061 1.03643 1.08852 1.23390 1.00324 0.96182 0.92385 1.19580 1.22120 0.98270 0.95320 1.18898 0.92373 0.88333 0.88460 1.67506 1.24820 1.35718 0.99946 1.24432 0.86647 0.82082 0.99214 1.67945 1.28676 1.23729 1.14359 1.17853 0.84277 0.83806 0.88228 1.44328 1.70616 1.09972 1.09008 1.20016 1.01470 0.83156 0.89704 1.20985 0.94900 0.98138 1.03627 1.21560 1.00707 0.90972 0.92331 1.21642 0.94442 1.00487 1.02200 1.17762 0.89552 0.85045 0.92896 1.45832 1.06139 1.13448 1.45163 1.22963 0.88082 0.97917 0.97186 1.21707 0.98986 0.97344 1.11339 1.24204 0.91978 0.99051 0.97099 1.77485 1.18603 0.94768 1.19492 1.66919 1.38247 1.01780 1.15127 1.22522 0.94206 0.92434 0.91110 0.92127 0.93048 0.93050 0.79959 0.78685 0.75350 0.89910 0.89981 0.83317 0.83209 0.79963 0.82522 0.78914 0.81259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.96 55.43 0.77 -26.11 16 2 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 3 Si 0.87 20.73 27.47 -169.99 -4.67 16.07 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 7 C -0.54 -15.57 9.94 -34.44 -0.34 -15.91 16 8 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 9 C 0.24 5.89 5.26 -5.19 -0.03 5.86 16 10 N -0.33 -7.64 3.63 -61.64 -0.22 -7.87 16 11 N -0.24 -4.96 12.45 30.80 0.38 -4.57 16 12 C 0.07 1.17 11.87 -17.11 -0.20 0.97 16 13 C -0.34 -5.74 6.14 -106.81 -0.66 -6.39 16 14 C 0.37 7.75 8.04 -156.23 -1.26 6.49 16 15 N -0.56 -11.12 10.47 -13.97 -0.15 -11.27 16 16 C 0.37 5.77 12.24 -92.11 -1.13 4.65 16 17 N -0.62 -8.87 9.69 -13.62 -0.13 -9.01 16 18 C 0.51 7.13 7.55 -154.85 -1.17 5.96 16 19 N -0.71 -6.63 5.67 -61.26 -0.35 -6.98 16 20 C 0.18 1.30 5.88 -5.19 -0.03 1.27 16 21 C -0.17 -1.11 5.27 -104.45 -0.55 -1.66 16 22 C -0.03 -0.19 9.85 -39.31 -0.39 -0.58 16 23 C -0.17 -1.31 9.70 -39.26 -0.38 -1.69 16 24 C 0.37 3.47 7.55 -154.37 -1.17 2.30 16 25 N -0.33 -3.10 3.81 -12.11 -0.05 -3.15 16 26 C 0.08 0.60 11.10 -16.83 -0.19 0.42 16 27 C -0.27 -1.61 10.80 -39.99 -0.43 -2.05 16 28 C 0.07 0.43 12.02 -17.34 -0.21 0.22 16 29 N -0.28 -2.67 11.84 30.64 0.36 -2.31 16 30 N -0.51 -4.40 9.86 -12.29 -0.12 -4.53 16 31 C 0.16 1.06 10.85 -17.57 -0.19 0.87 16 32 H 0.27 7.53 8.31 -40.82 -0.34 7.20 16 33 H 0.05 1.25 7.20 -51.93 -0.37 0.87 16 34 H 0.05 1.25 7.57 -51.93 -0.39 0.86 16 35 H 0.18 1.99 8.06 -52.49 -0.42 1.57 16 36 H 0.20 2.25 8.06 -52.49 -0.42 1.83 16 37 H 0.41 3.24 8.33 -40.82 -0.34 2.90 16 38 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 39 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 40 H 0.15 0.72 8.06 -52.48 -0.42 0.30 16 41 H 0.15 1.14 7.69 -52.48 -0.40 0.74 16 42 H 0.18 1.05 8.05 -52.49 -0.42 0.63 16 43 H 0.16 0.53 8.06 -52.49 -0.42 0.11 16 44 H 0.19 0.57 8.06 -52.49 -0.42 0.15 16 45 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 398.87 15.07 6.01 6.01 Total: -1.00 -36.86 398.87 -11.47 -48.33 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -4.90 Total: 2.43 kcal Atomic # 6 Polarization: 11.35 SS G_CDS: -8.41 Total: 2.94 kcal Atomic # 7 Polarization: -76.28 SS G_CDS: 0.50 Total: -75.78 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -4.67 Total: 16.07 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -36.86 -11.47 -48.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 302.414 kcal (2) G-P(sol) polarization free energy of solvation -36.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 265.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 254.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds