Wall clock time and date at job start Tue Mar 31 2020 06:37:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00191 * 2 1 4 4 H 1.48500 * 109.46977 * 270.00135 * 3 2 1 5 5 H 1.48500 * 109.46913 * 29.99536 * 3 2 1 6 6 H 1.48495 * 109.47707 * 149.99812 * 3 2 1 7 7 C 1.37884 * 120.00134 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99486 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99879 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47049 * 179.97438 * 9 7 2 11 11 N 1.40061 * 125.87858 * 270.00560 * 10 9 7 12 12 C 1.30249 * 109.70033 * 179.97438 * 11 10 9 13 13 C 1.41172 * 108.46775 * 359.97438 * 12 11 10 14 14 C 1.36317 * 125.86984 * 89.99721 * 10 9 7 15 15 N 1.33195 * 134.61795 * 0.02562 * 14 10 9 16 16 C 1.31505 * 120.68851 * 179.97438 * 15 14 10 17 17 N 1.32128 * 122.63936 * 359.66118 * 16 15 14 18 18 C 1.32860 * 121.19611 * 0.64380 * 17 16 15 19 19 N 1.38108 * 120.81232 * 179.69178 * 18 17 16 20 20 C 1.46499 * 120.00012 * 359.71960 * 19 18 17 21 21 C 1.50703 * 109.47183 * 179.97438 * 20 19 18 22 22 C 1.38797 * 120.35579 * 89.99619 * 21 20 19 23 23 C 1.38408 * 118.48465 * 180.02562 * 22 21 20 24 24 C 1.38944 * 119.10946 * 0.02562 * 23 22 21 25 25 N 1.39815 * 119.69345 * 179.97438 * 24 23 22 26 26 C 1.35842 * 126.10768 * 179.97438 * 25 24 23 27 27 C 1.35282 * 107.61411 * 179.74772 * 26 25 24 28 28 C 1.39956 * 107.96951 * 0.37186 * 27 26 25 29 29 N 1.30821 * 108.36748 * 359.62049 * 28 27 26 30 30 N 1.32308 * 120.62069 * 0.27416 * 24 23 22 31 31 C 1.31892 * 121.65026 * 359.43548 * 30 24 23 32 32 H 0.97000 * 119.99994 * 0.02562 * 1 2 3 33 33 H 1.09000 * 109.46845 * 60.00326 * 9 7 2 34 34 H 1.08994 * 109.47514 * 300.00516 * 9 7 2 35 35 H 1.07992 * 125.77126 * 179.97438 * 12 11 10 36 36 H 1.07994 * 118.67596 * 180.02562 * 16 15 14 37 37 H 0.97003 * 119.99669 * 179.71586 * 19 18 17 38 38 H 1.08997 * 109.47178 * 59.99757 * 20 19 18 39 39 H 1.09000 * 109.46912 * 299.99459 * 20 19 18 40 40 H 1.08007 * 120.75579 * 0.04539 * 22 21 20 41 41 H 1.08008 * 120.44532 * 179.97438 * 23 22 21 42 42 H 1.07997 * 126.19457 * 359.97438 * 26 25 24 43 43 H 1.07993 * 126.01832 * 180.25430 * 27 26 25 44 44 H 1.08002 * 125.81889 * 179.89275 * 28 27 26 45 45 H 1.08002 * 119.58292 * 180.29031 * 31 30 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0000 10 7 3.9999 -2.5752 0.0013 11 7 4.2739 -3.3479 1.1369 12 6 4.6903 -4.5278 0.7752 13 6 4.7077 -4.5829 -0.6354 14 6 4.2657 -3.3295 -1.1026 15 7 4.1922 -3.1234 -2.4164 16 6 4.5270 -4.0712 -3.2643 17 7 4.9542 -5.2588 -2.8733 18 6 5.0564 -5.5632 -1.5841 19 7 5.4979 -6.8092 -1.1843 20 6 5.8544 -7.8164 -2.1867 21 6 6.3021 -9.0778 -1.4942 22 6 5.3816 -10.0652 -1.1712 23 6 5.8351 -11.2077 -0.5351 24 6 7.1882 -11.3267 -0.2426 25 7 7.6594 -12.4755 0.4002 26 6 8.9487 -12.7274 0.7459 27 6 8.9816 -13.9377 1.3495 28 6 7.6781 -14.4468 1.3676 29 7 6.8860 -13.5720 0.8030 30 7 8.0341 -10.3606 -0.5615 31 6 7.6326 -9.2631 -1.1728 32 1 -0.4850 0.8400 -0.0004 33 1 3.8751 -0.6796 0.8895 34 1 3.8745 -0.6807 -0.8904 35 1 4.9742 -5.3288 1.4416 36 1 4.4553 -3.8687 -4.3227 37 1 5.5719 -7.0175 -0.2398 38 1 6.6642 -7.4377 -2.8102 39 1 4.9864 -8.0320 -2.8097 40 1 4.3354 -9.9448 -1.4110 41 1 5.1462 -11.9959 -0.2688 42 1 9.7938 -12.0775 0.5738 43 1 9.8596 -14.4260 1.7458 44 1 7.3766 -15.3977 1.7814 45 1 8.3527 -8.4976 -1.4217 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097199727.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:48 Heat of formation + Delta-G solvation = 230.729531 kcal Electronic energy + Delta-G solvation = -31241.086558 eV Core-core repulsion = 26875.972045 eV Total energy + Delta-G solvation = -4365.114513 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.146 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.83561 -42.56187 -41.15410 -39.85747 -37.69185 -35.75533 -35.02827 -33.85721 -33.61293 -32.99610 -31.89869 -31.14205 -30.23901 -29.64761 -27.09611 -25.37414 -25.06366 -24.88465 -24.10039 -23.31910 -21.96281 -21.77059 -21.55100 -19.48274 -19.39405 -19.28162 -18.69675 -17.82488 -17.65312 -17.01377 -16.72424 -16.58664 -16.27022 -16.15445 -15.62918 -15.39938 -15.27546 -15.18283 -15.07369 -14.94438 -14.55085 -14.47739 -14.33881 -14.20111 -13.96075 -13.88810 -13.68211 -13.13489 -12.94851 -12.64504 -12.42061 -12.34933 -12.04136 -11.88915 -11.85686 -11.55367 -11.46619 -11.03588 -10.91982 -10.81668 -10.60464 -10.24450 -10.07653 -9.75748 -9.31678 -8.98737 -8.43504 -6.53836 -0.51167 -0.04033 0.09951 0.52085 0.97811 1.10014 1.27865 1.33884 1.38993 1.46445 1.61941 1.80874 2.05737 2.24531 2.70614 2.88375 3.01509 3.19825 3.25628 3.38492 3.45796 3.53811 3.68169 3.80856 3.82387 3.87561 4.04927 4.06530 4.12878 4.40403 4.41755 4.51148 4.61812 4.68555 4.70805 4.71994 4.80262 4.89843 5.02731 5.11398 5.14302 5.19953 5.37234 5.49574 5.59172 5.68354 5.84472 6.01155 6.05325 6.19379 6.32791 6.45297 6.53971 6.73775 6.80419 7.09009 7.44748 8.73532 Molecular weight = 376.15amu Principal moments of inertia in cm(-1) A = 0.020546 B = 0.001509 C = 0.001469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.467112 B =18550.505521 C =19061.332841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.022 3.978 3 Si 0.953 3.047 4 H -0.258 1.258 5 H -0.271 1.271 6 H -0.244 1.244 7 C -0.550 4.550 8 H 0.020 0.980 9 C 0.251 3.749 10 N -0.367 5.367 11 N -0.289 5.289 12 C 0.101 3.899 13 C -0.346 4.346 14 C 0.339 3.661 15 N -0.605 5.605 16 C 0.378 3.622 17 N -0.610 5.610 18 C 0.521 3.479 19 N -0.681 5.681 20 C 0.184 3.816 21 C -0.166 4.166 22 C -0.022 4.022 23 C -0.177 4.177 24 C 0.357 3.643 25 N -0.344 5.344 26 C 0.061 3.939 27 C -0.260 4.260 28 C 0.066 3.934 29 N -0.322 5.322 30 N -0.523 5.523 31 C 0.157 3.843 32 H 0.274 0.726 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.236 0.764 36 H 0.232 0.768 37 H 0.420 0.580 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.166 0.834 41 H 0.146 0.854 42 H 0.194 0.806 43 H 0.184 0.816 44 H 0.226 0.774 45 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.447 -28.314 -2.586 35.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.178 4.178 3 Si 0.773 3.227 4 H -0.182 1.182 5 H -0.196 1.196 6 H -0.167 1.167 7 C -0.588 4.588 8 H 0.038 0.962 9 C 0.131 3.869 10 N -0.153 5.153 11 N -0.104 5.104 12 C -0.094 4.094 13 C -0.363 4.363 14 C 0.093 3.907 15 N -0.332 5.332 16 C 0.086 3.914 17 N -0.341 5.341 18 C 0.267 3.733 19 N -0.313 5.313 20 C 0.061 3.939 21 C -0.170 4.170 22 C -0.048 4.048 23 C -0.199 4.199 24 C 0.130 3.870 25 N -0.122 5.122 26 C -0.080 4.080 27 C -0.288 4.288 28 C -0.123 4.123 29 N -0.140 5.140 30 N -0.236 5.236 31 C -0.001 4.001 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.252 0.748 36 H 0.248 0.752 37 H 0.259 0.741 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.183 0.817 41 H 0.164 0.836 42 H 0.211 0.789 43 H 0.201 0.799 44 H 0.242 0.758 45 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 20.593 -26.890 -2.726 33.979 hybrid contribution -0.287 0.023 0.708 0.765 sum 20.305 -26.867 -2.017 33.737 Atomic orbital electron populations 1.70024 1.08323 1.28929 1.50252 1.25824 0.95762 1.03314 0.92904 0.85653 0.79495 0.77550 0.79958 1.18233 1.19608 1.16722 1.21222 0.90337 0.93538 1.53694 0.96151 1.19636 0.93612 0.74747 0.98880 1.48734 1.52852 1.13143 1.00599 1.76893 1.19221 1.05440 1.08816 1.24236 0.96653 0.95644 0.92851 1.19744 1.22773 0.97765 0.96056 1.19348 0.92874 0.89669 0.88814 1.67520 1.27657 1.37929 1.00119 1.25217 0.84366 0.81609 1.00196 1.68103 1.28778 1.22996 1.14173 1.17926 0.83239 0.84615 0.87519 1.44451 1.68056 1.08510 1.10315 1.20124 1.02048 0.82607 0.89151 1.20817 0.94743 0.97665 1.03736 1.21751 1.01562 0.90279 0.91217 1.21693 0.94122 1.01095 1.02976 1.18055 0.90190 0.85399 0.93306 1.46009 1.06702 1.13675 1.45853 1.23367 0.87996 0.98913 0.97710 1.22097 0.99714 0.96722 1.10258 1.24853 0.92013 0.99588 0.95804 1.77441 1.19954 0.95610 1.21021 1.66968 1.38476 1.02254 1.15926 1.22913 0.94842 0.92244 0.90108 0.91674 0.92693 0.92834 0.74780 0.75172 0.74116 0.88769 0.89551 0.81660 0.83572 0.78926 0.79857 0.75819 0.79216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.01 13.96 21.45 0.30 -58.71 16 2 C 0.02 1.27 5.47 84.66 0.46 1.74 16 3 Si 0.95 43.31 27.47 68.60 1.88 45.19 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 5 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.24 -10.21 6.54 99.48 0.65 -9.56 16 7 C -0.55 -33.43 9.94 25.60 0.25 -33.18 16 8 H 0.02 1.42 8.06 -2.91 -0.02 1.39 16 9 C 0.25 12.90 5.26 85.63 0.45 13.35 16 10 N -0.37 -17.45 3.63 -348.94 -1.27 -18.72 16 11 N -0.29 -12.10 12.45 -56.46 -0.70 -12.80 16 12 C 0.10 3.13 11.87 85.65 1.02 4.14 16 13 C -0.35 -11.42 6.14 -21.28 -0.13 -11.55 16 14 C 0.34 14.54 8.04 134.15 1.08 15.62 16 15 N -0.60 -24.42 10.47 -198.10 -2.07 -26.49 16 16 C 0.38 11.28 12.24 180.87 2.21 13.50 16 17 N -0.61 -16.03 9.69 -197.02 -1.91 -17.94 16 18 C 0.52 13.22 7.55 133.64 1.01 14.23 16 19 N -0.68 -10.36 5.67 -347.73 -1.97 -12.33 16 20 C 0.18 1.97 5.88 85.63 0.50 2.47 16 21 C -0.17 -1.63 5.27 -19.76 -0.10 -1.74 16 22 C -0.02 -0.23 9.85 22.44 0.22 -0.01 16 23 C -0.18 -2.63 9.70 22.48 0.22 -2.41 16 24 C 0.36 6.34 7.55 132.77 1.00 7.34 16 25 N -0.34 -6.34 3.81 -192.21 -0.73 -7.07 16 26 C 0.06 0.86 11.10 83.39 0.93 1.79 16 27 C -0.26 -2.71 10.80 22.00 0.24 -2.48 16 28 C 0.07 0.77 12.02 85.26 1.02 1.79 16 29 N -0.32 -5.87 11.84 -56.97 -0.67 -6.54 16 30 N -0.52 -8.30 9.86 -192.80 -1.90 -10.20 16 31 C 0.16 1.73 10.85 84.66 0.92 2.65 16 32 H 0.27 15.84 8.31 -92.71 -0.77 15.06 16 33 H 0.06 2.72 7.20 -2.39 -0.02 2.70 16 34 H 0.05 2.67 7.57 -2.39 -0.02 2.65 16 35 H 0.24 4.27 8.06 -2.91 -0.02 4.24 16 36 H 0.23 4.80 8.06 -2.91 -0.02 4.77 16 37 H 0.42 4.95 8.33 -92.71 -0.77 4.18 16 38 H 0.09 0.93 8.09 -2.39 -0.02 0.91 16 39 H 0.09 0.98 8.10 -2.39 -0.02 0.96 16 40 H 0.17 1.16 8.06 -2.91 -0.02 1.13 16 41 H 0.15 2.21 7.69 -2.91 -0.02 2.19 16 42 H 0.19 2.06 8.05 -2.91 -0.02 2.04 16 43 H 0.18 0.76 8.06 -2.91 -0.02 0.73 16 44 H 0.23 0.81 8.06 -2.91 -0.02 0.79 16 45 H 0.19 1.18 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -87.13 398.87 2.49 -84.64 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 0.24 Total: 13.72 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: 11.30 Total: 27.25 kcal Atomic # 7 Polarization: -159.86 SS G_CDS: -10.93 Total: -170.79 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Total: -87.13 2.49 -84.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199727.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 315.372 kcal (2) G-P(sol) polarization free energy of solvation -87.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 228.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 230.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds