Wall clock time and date at job start Tue Mar 31 2020 06:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00194 * 2 1 4 4 H 1.48495 * 109.47464 * 239.99534 * 3 2 1 5 5 H 1.48499 * 109.47138 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47213 * 119.99423 * 3 2 1 7 7 C 1.37883 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99772 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00050 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46846 * 179.97438 * 9 7 2 11 11 N 1.40057 * 125.87528 * 269.99913 * 10 9 7 12 12 C 1.30248 * 109.69650 * 180.02562 * 11 10 9 13 13 C 1.41176 * 108.46523 * 359.76746 * 12 11 10 14 14 C 1.36319 * 125.86776 * 90.00623 * 10 9 7 15 15 N 1.33195 * 134.61595 * 359.97438 * 14 10 9 16 16 C 1.31513 * 120.67681 * 180.02562 * 15 14 10 17 17 N 1.32114 * 122.64858 * 0.02562 * 16 15 14 18 18 C 1.32863 * 121.19784 * 0.02562 * 17 16 15 19 19 N 1.38104 * 120.81737 * 179.97438 * 18 17 16 20 20 C 1.46506 * 119.99745 * 359.97438 * 19 18 17 21 21 C 1.50699 * 109.46928 * 180.02562 * 20 19 18 22 22 N 1.30529 * 126.39716 * 90.02854 * 21 20 19 23 23 N 1.28547 * 109.89827 * 180.02562 * 22 21 20 24 24 C 1.30532 * 109.89467 * 359.97438 * 23 22 21 25 25 N 1.36283 * 126.39664 * 269.71714 * 21 20 19 26 26 C 1.40274 * 127.10419 * 0.02562 * 25 21 20 27 27 C 1.38807 * 120.06373 * 309.72779 * 26 25 21 28 28 C 1.38125 * 119.93508 * 179.76906 * 27 26 25 29 29 C 1.38273 * 120.06163 * 0.48246 * 28 27 26 30 30 C 1.38271 * 120.13213 * 359.79130 * 29 28 27 31 31 C 1.38135 * 120.06253 * 359.95799 * 30 29 28 32 32 H 0.97001 * 119.99777 * 0.02562 * 1 2 3 33 33 H 1.09001 * 109.46675 * 59.99638 * 9 7 2 34 34 H 1.08996 * 109.47117 * 299.99688 * 9 7 2 35 35 H 1.07996 * 125.76765 * 180.02562 * 12 11 10 36 36 H 1.08008 * 118.67091 * 179.97438 * 16 15 14 37 37 H 0.96995 * 120.00145 * 180.27189 * 19 18 17 38 38 H 1.09000 * 109.47212 * 300.00437 * 20 19 18 39 39 H 1.09001 * 109.46577 * 60.00511 * 20 19 18 40 40 H 1.07998 * 126.39618 * 180.02562 * 24 23 22 41 41 H 1.08003 * 120.03236 * 359.97438 * 27 26 25 42 42 H 1.08002 * 119.97165 * 180.27389 * 28 27 26 43 43 H 1.08006 * 119.93652 * 179.76776 * 29 28 27 44 44 H 1.08002 * 119.97051 * 179.97438 * 30 29 28 45 45 H 1.07997 * 120.03172 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 7 2.7362 -4.2366 -1.1343 12 6 3.5487 -5.1878 -0.7714 13 6 3.5891 -5.2273 0.6392 14 6 2.7218 -4.2199 1.1052 15 7 2.5790 -4.0524 2.4188 16 6 3.2320 -4.8158 3.2676 17 7 4.0527 -5.7749 2.8778 18 6 4.2627 -6.0194 1.5889 19 7 5.1227 -7.0237 1.1902 20 6 5.8171 -7.8346 2.1936 21 6 6.6885 -8.8513 1.5023 22 7 7.9344 -8.6904 1.1478 23 7 8.3697 -9.7592 0.5816 24 6 7.4248 -10.6591 0.5453 25 7 6.3248 -10.1125 1.1358 26 6 5.0749 -10.7210 1.3235 27 6 4.4735 -10.7026 2.5744 28 6 3.2405 -11.2985 2.7552 29 6 2.6100 -11.9215 1.6939 30 6 3.2093 -11.9463 0.4481 31 6 4.4399 -11.3476 0.2601 32 1 -0.4850 0.8401 -0.0004 33 1 0.6245 -2.5570 -0.8897 34 1 0.6240 -2.5567 0.8903 35 1 4.1015 -5.8340 -1.4371 36 1 3.0923 -4.6514 4.3259 37 1 5.2704 -7.1894 0.2460 38 1 6.4363 -7.1896 2.8169 39 1 5.0843 -8.3473 2.8167 40 1 7.5019 -11.6528 0.1294 41 1 4.9675 -10.2200 3.4047 42 1 2.7700 -11.2807 3.7271 43 1 1.6477 -12.3900 1.8384 44 1 2.7147 -12.4341 -0.3789 45 1 4.9073 -11.3670 -0.7133 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199736.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:29 Heat of formation + Delta-G solvation = 239.651925 kcal Electronic energy + Delta-G solvation = -32525.922586 eV Core-core repulsion = 28161.194977 eV Total energy + Delta-G solvation = -4364.727609 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.146 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -43.71392 -41.42678 -39.85526 -38.55488 -36.63777 -35.38607 -33.82113 -32.81190 -31.78504 -31.37158 -31.21247 -30.33665 -29.55781 -27.42975 -26.59970 -24.35923 -23.99233 -23.72961 -23.27596 -22.29492 -22.20393 -21.23282 -20.17829 -18.91547 -17.96493 -17.54793 -17.01379 -16.72170 -16.66933 -16.44077 -16.03459 -15.63156 -15.23754 -15.06405 -14.85634 -14.56127 -14.41537 -14.18817 -14.00878 -13.85073 -13.72494 -13.34950 -13.33978 -12.97374 -12.52114 -12.16261 -12.04619 -11.86293 -11.67371 -11.33577 -11.30390 -11.05257 -11.00709 -10.82051 -10.76242 -10.28601 -10.14491 -9.87739 -9.86437 -9.69418 -9.36366 -9.33511 -8.73684 -8.59452 -8.27813 -7.71126 -6.22079 -4.28608 0.27521 0.64338 1.24604 1.26105 1.82096 1.88226 2.30676 2.92338 2.98420 3.01900 3.13121 3.27321 3.30106 3.35443 3.67379 4.00816 4.13607 4.19010 4.29852 4.35145 4.45024 4.50226 4.53080 4.66663 4.69043 4.70860 4.85493 4.97136 5.04579 5.09847 5.13713 5.18072 5.28074 5.36916 5.50938 5.53886 5.65648 5.67259 5.70434 5.81452 6.05283 6.22819 6.48554 6.61631 6.76501 7.01080 7.07304 7.13298 7.43293 7.69686 7.85952 7.90561 8.18967 8.20374 8.69810 8.78410 9.36509 10.86141 Molecular weight = 376.15amu Principal moments of inertia in cm(-1) A = 0.013462 B = 0.002098 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.505139 B =13340.184921 C =14041.612191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.275 1.275 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.264 3.736 10 N -0.331 5.331 11 N -0.241 5.241 12 C 0.068 3.932 13 C -0.334 4.334 14 C 0.364 3.636 15 N -0.551 5.551 16 C 0.368 3.632 17 N -0.618 5.618 18 C 0.513 3.487 19 N -0.703 5.703 20 C 0.221 3.779 21 C 0.165 3.835 22 N -0.265 5.265 23 N -0.289 5.289 24 C 0.166 3.834 25 N -0.425 5.425 26 C 0.109 3.891 27 C -0.107 4.107 28 C -0.098 4.098 29 C -0.106 4.106 30 C -0.101 4.101 31 C -0.109 4.109 32 H 0.268 0.732 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.181 0.819 36 H 0.197 0.803 37 H 0.411 0.589 38 H 0.107 0.893 39 H 0.089 0.911 40 H 0.223 0.777 41 H 0.134 0.866 42 H 0.137 0.863 43 H 0.133 0.867 44 H 0.136 0.864 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.236 -29.262 4.781 30.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.573 4.573 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.117 5.117 11 N -0.057 5.057 12 C -0.127 4.127 13 C -0.352 4.352 14 C 0.116 3.884 15 N -0.275 5.275 16 C 0.074 3.926 17 N -0.349 5.349 18 C 0.261 3.739 19 N -0.339 5.339 20 C 0.094 3.906 21 C -0.101 4.101 22 N -0.104 5.104 23 N -0.128 5.128 24 C -0.120 4.120 25 N -0.113 5.113 26 C 0.018 3.982 27 C -0.127 4.127 28 C -0.117 4.117 29 C -0.124 4.124 30 C -0.120 4.120 31 C -0.128 4.128 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.198 0.802 36 H 0.213 0.787 37 H 0.248 0.752 38 H 0.125 0.875 39 H 0.107 0.893 40 H 0.239 0.761 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.151 0.849 44 H 0.153 0.847 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.663 -27.523 4.567 28.933 hybrid contribution -0.198 -0.353 -0.483 0.630 sum 7.465 -27.876 4.084 29.146 Atomic orbital electron populations 1.69907 1.06007 1.27759 1.49261 1.24891 0.94985 0.99355 0.94391 0.86400 0.79447 0.81822 0.78929 1.20001 1.20880 1.19919 1.21210 0.93541 0.89665 1.52895 0.92071 1.19802 0.85658 0.79819 0.99998 1.49486 1.35782 1.27692 0.98764 1.76952 1.11466 1.07893 1.09348 1.23358 0.99066 0.97922 0.92327 1.19573 1.12447 1.07839 0.95305 1.18923 0.91028 0.89889 0.88525 1.67525 1.29467 1.30572 0.99972 1.24416 0.85076 0.83913 0.99222 1.67909 1.26751 1.25924 1.14293 1.17761 0.84012 0.83729 0.88402 1.44089 1.46367 1.34648 1.08753 1.19536 0.92961 0.88902 0.89155 1.25183 0.94733 0.86019 1.04120 1.74345 1.06252 1.17598 1.12251 1.74327 1.24559 0.97427 1.16443 1.26831 0.82537 1.02253 1.00340 1.44113 1.10661 1.12214 1.44303 1.17639 0.84910 1.00588 0.95110 1.21146 0.96463 0.99870 0.95195 1.21147 0.94008 0.96540 0.99966 1.21409 1.00151 0.98098 0.92769 1.21126 0.94275 0.98646 0.97915 1.21081 0.95718 0.98444 0.97587 0.92199 0.92804 0.92213 0.80229 0.78697 0.75234 0.87529 0.89270 0.76071 0.84815 0.84521 0.84929 0.84654 0.84968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.74 13.29 55.43 0.74 -25.01 16 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 3 Si 0.91 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.53 -15.28 9.39 -34.44 -0.32 -15.60 16 8 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 9 C 0.26 7.01 6.19 -5.19 -0.03 6.98 16 10 N -0.33 -7.88 3.63 -61.64 -0.22 -8.10 16 11 N -0.24 -5.15 12.45 30.80 0.38 -4.77 16 12 C 0.07 1.17 11.87 -17.11 -0.20 0.96 16 13 C -0.33 -5.99 6.14 -106.81 -0.66 -6.65 16 14 C 0.36 7.92 8.04 -156.23 -1.26 6.67 16 15 N -0.55 -11.33 10.47 -13.97 -0.15 -11.48 16 16 C 0.37 5.89 12.24 -92.12 -1.13 4.77 16 17 N -0.62 -9.27 9.69 -13.62 -0.13 -9.40 16 18 C 0.51 7.69 7.55 -154.85 -1.17 6.52 16 19 N -0.70 -8.02 5.67 -61.26 -0.35 -8.37 16 20 C 0.22 2.15 6.06 -5.19 -0.03 2.12 16 21 C 0.17 1.66 7.28 -154.25 -1.12 0.54 16 22 N -0.26 -3.35 12.20 32.94 0.40 -2.95 16 23 N -0.29 -3.39 12.20 29.84 0.36 -3.02 16 24 C 0.17 1.31 12.51 -89.20 -1.12 0.20 16 25 N -0.42 -3.41 2.89 -58.95 -0.17 -3.58 16 26 C 0.11 0.73 5.91 -83.57 -0.49 0.23 16 27 C -0.11 -0.66 8.50 -39.41 -0.34 -1.00 16 28 C -0.10 -0.50 10.04 -39.61 -0.40 -0.90 16 29 C -0.11 -0.49 10.04 -39.56 -0.40 -0.89 16 30 C -0.10 -0.46 10.04 -39.61 -0.40 -0.86 16 31 C -0.11 -0.59 9.71 -39.41 -0.38 -0.97 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.05 1.48 8.14 -51.93 -0.42 1.05 16 34 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 35 H 0.18 2.18 8.06 -52.49 -0.42 1.75 16 36 H 0.20 2.31 8.06 -52.48 -0.42 1.89 16 37 H 0.41 4.29 8.33 -40.82 -0.34 3.95 16 38 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.09 0.78 5.71 -51.93 -0.30 0.48 16 40 H 0.22 0.78 8.06 -52.49 -0.42 0.36 16 41 H 0.13 0.76 7.06 -52.48 -0.37 0.39 16 42 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 43 H 0.13 0.36 8.06 -52.48 -0.42 -0.06 16 44 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 45 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 LS Contribution 398.37 15.07 6.00 6.00 Total: -1.00 -35.84 398.37 -12.47 -48.31 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.78 Total: 1.67 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: -9.54 Total: 3.91 kcal Atomic # 7 Polarization: -77.54 SS G_CDS: 0.87 Total: -76.67 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.84 -12.47 -48.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199736.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 287.967 kcal (2) G-P(sol) polarization free energy of solvation -35.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 252.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 239.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds