Wall clock time and date at job start Tue Mar 31 2020 06:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00194 * 2 1 4 4 H 1.48495 * 109.47464 * 239.99534 * 3 2 1 5 5 H 1.48499 * 109.47138 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47213 * 119.99423 * 3 2 1 7 7 C 1.37883 * 119.99627 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99772 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00050 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46846 * 179.97438 * 9 7 2 11 11 N 1.40057 * 125.87528 * 269.99913 * 10 9 7 12 12 C 1.30248 * 109.69650 * 180.02562 * 11 10 9 13 13 C 1.41176 * 108.46523 * 359.76746 * 12 11 10 14 14 C 1.36319 * 125.86776 * 90.00623 * 10 9 7 15 15 N 1.33195 * 134.61595 * 359.97438 * 14 10 9 16 16 C 1.31513 * 120.67681 * 180.02562 * 15 14 10 17 17 N 1.32114 * 122.64858 * 0.02562 * 16 15 14 18 18 C 1.32863 * 121.19784 * 0.02562 * 17 16 15 19 19 N 1.38104 * 120.81737 * 179.97438 * 18 17 16 20 20 C 1.46506 * 119.99745 * 359.97438 * 19 18 17 21 21 C 1.50699 * 109.46928 * 180.02562 * 20 19 18 22 22 N 1.30529 * 126.39716 * 90.02854 * 21 20 19 23 23 N 1.28547 * 109.89827 * 180.02562 * 22 21 20 24 24 C 1.30532 * 109.89467 * 359.97438 * 23 22 21 25 25 N 1.36283 * 126.39664 * 269.71714 * 21 20 19 26 26 C 1.40274 * 127.10419 * 0.02562 * 25 21 20 27 27 C 1.38807 * 120.06373 * 309.72779 * 26 25 21 28 28 C 1.38125 * 119.93508 * 179.76906 * 27 26 25 29 29 C 1.38273 * 120.06163 * 0.48246 * 28 27 26 30 30 C 1.38271 * 120.13213 * 359.79130 * 29 28 27 31 31 C 1.38135 * 120.06253 * 359.95799 * 30 29 28 32 32 H 0.97001 * 119.99777 * 0.02562 * 1 2 3 33 33 H 1.09001 * 109.46675 * 59.99638 * 9 7 2 34 34 H 1.08996 * 109.47117 * 299.99688 * 9 7 2 35 35 H 1.07996 * 125.76765 * 180.02562 * 12 11 10 36 36 H 1.08008 * 118.67091 * 179.97438 * 16 15 14 37 37 H 0.96995 * 120.00145 * 180.27189 * 19 18 17 38 38 H 1.09000 * 109.47212 * 300.00437 * 20 19 18 39 39 H 1.09001 * 109.46577 * 60.00511 * 20 19 18 40 40 H 1.07998 * 126.39618 * 180.02562 * 24 23 22 41 41 H 1.08003 * 120.03236 * 359.97438 * 27 26 25 42 42 H 1.08002 * 119.97165 * 180.27389 * 28 27 26 43 43 H 1.08006 * 119.93652 * 179.76776 * 29 28 27 44 44 H 1.08002 * 119.97051 * 179.97438 * 30 29 28 45 45 H 1.07997 * 120.03172 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2124 5 1 1.2842 2.7464 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6128 0.0005 11 7 2.7362 -4.2366 -1.1343 12 6 3.5487 -5.1878 -0.7714 13 6 3.5891 -5.2273 0.6392 14 6 2.7218 -4.2199 1.1052 15 7 2.5790 -4.0524 2.4188 16 6 3.2320 -4.8158 3.2676 17 7 4.0527 -5.7749 2.8778 18 6 4.2627 -6.0194 1.5889 19 7 5.1227 -7.0237 1.1902 20 6 5.8171 -7.8346 2.1936 21 6 6.6885 -8.8513 1.5023 22 7 7.9344 -8.6904 1.1478 23 7 8.3697 -9.7592 0.5816 24 6 7.4248 -10.6591 0.5453 25 7 6.3248 -10.1125 1.1358 26 6 5.0749 -10.7210 1.3235 27 6 4.4735 -10.7026 2.5744 28 6 3.2405 -11.2985 2.7552 29 6 2.6100 -11.9215 1.6939 30 6 3.2093 -11.9463 0.4481 31 6 4.4399 -11.3476 0.2601 32 1 -0.4850 0.8401 -0.0004 33 1 0.6245 -2.5570 -0.8897 34 1 0.6240 -2.5567 0.8903 35 1 4.1015 -5.8340 -1.4371 36 1 3.0923 -4.6514 4.3259 37 1 5.2704 -7.1894 0.2460 38 1 6.4363 -7.1896 2.8169 39 1 5.0843 -8.3473 2.8167 40 1 7.5019 -11.6528 0.1294 41 1 4.9675 -10.2200 3.4047 42 1 2.7700 -11.2807 3.7271 43 1 1.6477 -12.3900 1.8384 44 1 2.7147 -12.4341 -0.3789 45 1 4.9073 -11.3670 -0.7133 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097199736.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:28 Heat of formation + Delta-G solvation = 220.126256 kcal Electronic energy + Delta-G solvation = -32526.769282 eV Core-core repulsion = 28161.194977 eV Total energy + Delta-G solvation = -4365.574305 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.146 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -44.40978 -42.85713 -40.26446 -39.92522 -37.75851 -35.99821 -35.74304 -34.16027 -33.08029 -32.51415 -31.95624 -30.85519 -30.69801 -29.23352 -27.69290 -25.54841 -25.11551 -24.86154 -24.16060 -23.60373 -22.75809 -21.91907 -21.62652 -19.68714 -19.18544 -18.84172 -18.70620 -17.85297 -17.39411 -17.32555 -16.95922 -16.80174 -16.48041 -16.30694 -15.69796 -15.37666 -15.36744 -15.19542 -15.10840 -14.93397 -14.73613 -14.51415 -14.38190 -13.89732 -13.85899 -13.67452 -13.08770 -13.05823 -12.75537 -12.56635 -12.45541 -12.41346 -12.40484 -12.30527 -11.88145 -11.83700 -11.56804 -11.52209 -10.76000 -10.70361 -10.64815 -10.09833 -10.05767 -9.81511 -9.79248 -9.09963 -8.35827 -6.52525 -0.18646 -0.07652 0.28456 0.47776 0.61802 1.22015 1.32371 1.37330 1.37679 1.47767 1.55058 1.59373 2.08142 2.31662 2.62151 2.89708 2.94103 2.97992 3.26052 3.38333 3.49729 3.60745 3.72732 3.75934 3.83083 3.85129 4.04719 4.15967 4.18289 4.30061 4.37783 4.41200 4.50185 4.65306 4.66870 4.81767 4.85110 4.86938 4.94650 5.06801 5.26750 5.31990 5.46197 5.47410 5.48997 5.62769 5.65748 5.77602 5.85152 5.98529 6.01954 6.43507 6.53423 6.70218 7.16802 7.40647 7.47738 8.71696 Molecular weight = 376.15amu Principal moments of inertia in cm(-1) A = 0.013462 B = 0.002098 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.505139 B =13340.184921 C =14041.612191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.021 3.979 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.268 1.268 6 H -0.271 1.271 7 C -0.554 4.554 8 H 0.045 0.955 9 C 0.285 3.715 10 N -0.365 5.365 11 N -0.287 5.287 12 C 0.098 3.902 13 C -0.343 4.343 14 C 0.341 3.659 15 N -0.600 5.600 16 C 0.379 3.621 17 N -0.609 5.609 18 C 0.525 3.475 19 N -0.683 5.683 20 C 0.225 3.775 21 C 0.164 3.836 22 N -0.301 5.301 23 N -0.331 5.331 24 C 0.185 3.815 25 N -0.417 5.417 26 C 0.090 3.910 27 C -0.119 4.119 28 C -0.106 4.106 29 C -0.109 4.109 30 C -0.105 4.105 31 C -0.110 4.110 32 H 0.274 0.726 33 H 0.031 0.969 34 H 0.035 0.965 35 H 0.232 0.768 36 H 0.235 0.765 37 H 0.419 0.581 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.262 0.738 41 H 0.134 0.866 42 H 0.151 0.849 43 H 0.151 0.849 44 H 0.156 0.844 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.287 -31.564 5.094 33.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.180 4.180 3 Si 0.796 3.204 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.592 4.592 8 H 0.063 0.937 9 C 0.167 3.833 10 N -0.151 5.151 11 N -0.102 5.102 12 C -0.097 4.097 13 C -0.360 4.360 14 C 0.094 3.906 15 N -0.327 5.327 16 C 0.087 3.913 17 N -0.340 5.340 18 C 0.272 3.728 19 N -0.317 5.317 20 C 0.100 3.900 21 C -0.103 4.103 22 N -0.141 5.141 23 N -0.169 5.169 24 C -0.101 4.101 25 N -0.104 5.104 26 C -0.001 4.001 27 C -0.138 4.138 28 C -0.124 4.124 29 C -0.127 4.127 30 C -0.123 4.123 31 C -0.129 4.129 32 H 0.083 0.917 33 H 0.049 0.951 34 H 0.053 0.947 35 H 0.248 0.752 36 H 0.251 0.749 37 H 0.256 0.744 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.278 0.722 41 H 0.152 0.848 42 H 0.169 0.831 43 H 0.169 0.831 44 H 0.173 0.827 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 8.751 -29.898 4.877 31.532 hybrid contribution -0.466 0.048 -0.486 0.675 sum 8.285 -29.850 4.391 31.288 Atomic orbital electron populations 1.69998 1.07312 1.28971 1.49346 1.25765 0.95901 1.02748 0.93550 0.85391 0.78373 0.77672 0.78950 1.19512 1.19263 1.19623 1.21360 0.92866 0.91236 1.53731 0.93691 1.19129 0.85888 0.80747 0.97572 1.49114 1.37183 1.28460 1.00373 1.76899 1.13993 1.10101 1.09174 1.24168 0.96632 0.96152 0.92772 1.19683 1.12583 1.07781 0.96001 1.19314 0.91740 0.90717 0.88841 1.67549 1.31977 1.33054 1.00114 1.25247 0.83291 0.82518 1.00262 1.68076 1.26437 1.25534 1.13923 1.17781 0.83599 0.83607 0.87863 1.44126 1.44639 1.33160 1.09729 1.19581 0.93085 0.88759 0.88622 1.24992 0.94184 0.86827 1.04309 1.74260 1.07584 1.18772 1.13480 1.74253 1.26267 0.98189 1.18170 1.27561 0.81461 1.02788 0.98331 1.44135 1.11229 1.11483 1.43588 1.17811 0.84626 1.01766 0.95878 1.21261 0.96991 1.00387 0.95157 1.21395 0.93740 0.96333 1.00946 1.21735 1.00818 0.97473 0.92638 1.21434 0.94004 0.98252 0.98601 1.21274 0.95962 0.97965 0.97747 0.91657 0.95063 0.94683 0.75208 0.74885 0.74356 0.87803 0.87763 0.72200 0.84835 0.83148 0.83105 0.82676 0.83752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.41 13.29 21.45 0.28 -54.13 16 2 C 0.02 1.23 5.46 84.66 0.46 1.69 16 3 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 7 C -0.55 -33.06 9.39 25.60 0.24 -32.82 16 8 H 0.04 2.76 7.81 -2.91 -0.02 2.74 16 9 C 0.29 16.16 6.19 85.63 0.53 16.69 16 10 N -0.36 -18.18 3.63 -348.94 -1.27 -19.44 16 11 N -0.29 -12.55 12.45 -56.46 -0.70 -13.25 16 12 C 0.10 3.23 11.87 85.65 1.02 4.24 16 13 C -0.34 -12.04 6.14 -21.28 -0.13 -12.17 16 14 C 0.34 15.18 8.04 134.14 1.08 16.26 16 15 N -0.60 -25.10 10.47 -198.10 -2.07 -27.17 16 16 C 0.38 11.72 12.24 180.87 2.21 13.93 16 17 N -0.61 -17.08 9.69 -197.01 -1.91 -18.99 16 18 C 0.53 14.78 7.55 133.64 1.01 15.78 16 19 N -0.68 -13.92 5.67 -347.71 -1.97 -15.89 16 20 C 0.22 3.92 6.06 85.63 0.52 4.44 16 21 C 0.16 3.01 7.28 137.72 1.00 4.02 16 22 N -0.30 -7.33 12.20 -49.69 -0.61 -7.93 16 23 N -0.33 -7.35 12.20 -59.49 -0.73 -8.07 16 24 C 0.19 2.49 12.51 179.85 2.25 4.74 16 25 N -0.42 -5.76 2.89 -340.43 -0.98 -6.74 16 26 C 0.09 0.97 5.91 38.06 0.22 1.20 16 27 C -0.12 -1.21 8.50 22.38 0.19 -1.02 16 28 C -0.11 -0.83 10.04 22.25 0.22 -0.60 16 29 C -0.11 -0.69 10.04 22.29 0.22 -0.47 16 30 C -0.10 -0.64 10.04 22.25 0.22 -0.42 16 31 C -0.11 -0.87 9.71 22.38 0.22 -0.65 16 32 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 33 H 0.03 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.23 4.82 8.06 -2.91 -0.02 4.80 16 36 H 0.24 5.02 8.06 -2.91 -0.02 4.99 16 37 H 0.42 7.54 8.33 -92.71 -0.77 6.77 16 38 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.10 1.56 5.71 -2.39 -0.01 1.55 16 40 H 0.26 0.95 8.06 -2.91 -0.02 0.93 16 41 H 0.13 1.27 7.06 -2.91 -0.02 1.25 16 42 H 0.15 0.67 8.06 -2.91 -0.02 0.64 16 43 H 0.15 0.35 8.06 -2.91 -0.02 0.33 16 44 H 0.16 0.29 8.06 -2.91 -0.02 0.26 16 45 H 0.14 0.72 8.06 -2.91 -0.02 0.69 16 Total: -1.00 -82.55 398.37 3.86 -78.68 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.30 Total: 10.86 kcal Atomic # 6 Polarization: 23.35 SS G_CDS: 11.49 Total: 34.84 kcal Atomic # 7 Polarization: -161.67 SS G_CDS: -9.96 Total: -171.62 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -82.55 3.86 -78.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199736.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 298.809 kcal (2) G-P(sol) polarization free energy of solvation -82.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 216.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.683 kcal (6) G-S(sol) free energy of system = (1) + (5) 220.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds