Wall clock time and date at job start Tue Mar 31 2020 06:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00254 * 2 1 4 4 H 1.48497 * 109.47463 * 270.00810 * 3 2 1 5 5 H 1.48505 * 109.46897 * 30.00931 * 3 2 1 6 6 H 1.48501 * 109.47215 * 150.00545 * 3 2 1 7 7 C 1.37876 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00555 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99921 * 359.97438 * 7 2 1 10 10 N 1.46494 * 109.47473 * 180.02562 * 9 7 2 11 11 N 1.40066 * 125.87248 * 270.00064 * 10 9 7 12 12 C 1.30249 * 109.69738 * 179.97438 * 11 10 9 13 13 C 1.41164 * 108.47231 * 359.97438 * 12 11 10 14 14 C 1.36311 * 125.87638 * 89.99417 * 10 9 7 15 15 N 1.33193 * 134.61925 * 0.02562 * 14 10 9 16 16 C 1.31509 * 120.68884 * 179.97438 * 15 14 10 17 17 N 1.32122 * 122.64281 * 359.67034 * 16 15 14 18 18 C 1.32858 * 121.19357 * 0.63092 * 17 16 15 19 19 N 1.38105 * 120.81172 * 179.69557 * 18 17 16 20 20 C 1.46496 * 120.00464 * 359.72615 * 19 18 17 21 21 C 1.50695 * 109.47577 * 179.97438 * 20 19 18 22 22 C 1.38801 * 120.35795 * 270.02374 * 21 20 19 23 23 C 1.38407 * 118.48545 * 179.97438 * 22 21 20 24 24 C 1.38933 * 119.10962 * 0.02562 * 23 22 21 25 25 N 1.39834 * 119.68939 * 180.02562 * 24 23 22 26 26 C 1.37178 * 126.48857 * 184.71221 * 25 24 23 27 27 C 1.34617 * 106.82646 * 179.89801 * 26 25 24 28 28 N 1.34152 * 108.21980 * 0.36365 * 27 26 25 29 29 C 1.30481 * 109.36951 * 359.76705 * 28 27 26 30 30 N 1.32294 * 120.62343 * 359.97438 * 24 23 22 31 31 C 1.31910 * 121.65528 * 0.02562 * 30 24 23 32 32 H 0.97002 * 120.00116 * 359.97438 * 1 2 3 33 33 H 1.08997 * 109.47379 * 60.00034 * 9 7 2 34 34 H 1.09010 * 109.46782 * 300.00216 * 9 7 2 35 35 H 1.07998 * 125.76489 * 180.02562 * 12 11 10 36 36 H 1.07998 * 118.67373 * 180.02562 * 16 15 14 37 37 H 0.97008 * 119.99748 * 179.72580 * 19 18 17 38 38 H 1.09002 * 109.47074 * 59.99025 * 20 19 18 39 39 H 1.09000 * 109.47141 * 300.00340 * 20 19 18 40 40 H 1.08004 * 120.75232 * 359.97438 * 22 21 20 41 41 H 1.08000 * 120.44106 * 180.02562 * 23 22 21 42 42 H 1.08002 * 126.58284 * 0.02562 * 26 25 24 43 43 H 1.08001 * 125.88896 * 180.13626 * 27 26 25 44 44 H 1.08003 * 125.72178 * 179.97438 * 29 28 27 45 45 H 1.07993 * 119.58172 * 180.27246 * 31 30 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7003 6 1 3.5468 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 7 2.7363 -4.2366 -1.1355 12 6 3.5495 -5.1871 -0.7727 13 6 3.5870 -5.2294 0.6378 14 6 2.7221 -4.2198 1.1040 15 7 2.5790 -4.0528 2.4176 16 6 3.2315 -4.8166 3.2663 17 7 4.0469 -5.7803 2.8764 18 6 4.2607 -6.0213 1.5875 19 7 5.1195 -7.0267 1.1888 20 6 5.8125 -7.8389 2.1919 21 6 6.6818 -8.8573 1.5006 22 6 6.1753 -10.1087 1.1781 23 6 7.0076 -11.0141 0.5430 24 6 8.3142 -10.6421 0.2519 25 7 9.1653 -11.5470 -0.3900 26 6 10.4972 -11.3623 -0.6613 27 6 10.9262 -12.4763 -1.2836 28 7 9.8883 -13.3183 -1.3994 29 6 8.8281 -12.7738 -0.8683 30 7 8.7604 -9.4394 0.5754 31 6 7.9911 -8.5554 1.1810 32 1 -0.4850 0.8400 0.0004 33 1 0.6240 -2.5568 -0.8903 34 1 0.6247 -2.5570 0.8898 35 1 4.1025 -5.8331 -1.4385 36 1 3.0909 -4.6531 4.3246 37 1 5.2639 -7.1951 0.2444 38 1 5.0789 -8.3507 2.8149 39 1 6.4325 -7.1949 2.8157 40 1 5.1550 -10.3700 1.4173 41 1 6.6461 -11.9965 0.2772 42 1 11.0885 -10.4914 -0.4201 43 1 11.9317 -12.6590 -1.6329 44 1 7.8470 -13.2225 -0.8176 45 1 8.3887 -7.5816 1.4258 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199777.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:45 Heat of formation + Delta-G solvation = 232.625249 kcal Electronic energy + Delta-G solvation = -31256.553141 eV Core-core repulsion = 26891.520832 eV Total energy + Delta-G solvation = -4365.032308 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.146 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.85850 -41.47236 -40.80842 -38.56891 -36.81691 -34.82625 -33.80908 -33.40969 -32.41635 -31.37746 -31.13837 -29.98972 -29.31761 -27.37869 -26.39627 -24.65195 -24.03864 -23.77592 -23.15602 -22.21007 -21.53711 -21.35630 -20.20533 -19.37702 -18.13575 -17.51786 -17.21770 -16.73298 -16.63073 -16.26725 -15.88129 -15.82562 -15.24339 -15.03837 -14.64258 -14.54213 -14.38539 -14.34880 -14.06183 -14.01987 -13.84759 -13.76278 -13.71653 -13.35741 -12.96516 -12.41100 -12.19307 -11.70030 -11.31062 -11.29092 -11.04787 -11.03426 -10.80378 -10.67072 -10.64140 -10.34637 -10.31140 -10.16515 -9.88109 -9.37428 -9.35648 -9.01358 -8.74304 -8.62732 -8.30282 -7.73527 -6.25008 -4.31696 -0.03881 0.47088 1.22405 1.62769 1.85565 1.86995 2.60911 2.81252 2.93466 3.01576 3.22220 3.25724 3.27996 3.33640 3.59113 3.89055 4.00187 4.11826 4.20523 4.22716 4.27637 4.33485 4.51527 4.60787 4.67766 4.81388 4.88759 4.91380 5.04988 5.08000 5.10868 5.12788 5.23568 5.30162 5.50223 5.51074 5.64408 5.64694 5.78028 6.16202 6.21995 6.55325 6.59283 6.77591 6.98710 7.04783 7.09625 7.13487 7.41633 7.45443 7.67209 7.83620 7.87525 8.16093 8.67134 8.75790 9.33549 10.83224 Molecular weight = 376.15amu Principal moments of inertia in cm(-1) A = 0.017784 B = 0.001521 C = 0.001479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.057114 B =18405.348829 C =18920.777678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.263 3.737 10 N -0.331 5.331 11 N -0.241 5.241 12 C 0.068 3.932 13 C -0.336 4.336 14 C 0.363 3.637 15 N -0.552 5.552 16 C 0.367 3.633 17 N -0.618 5.618 18 C 0.509 3.491 19 N -0.707 5.707 20 C 0.180 3.820 21 C -0.168 4.168 22 C -0.025 4.025 23 C -0.181 4.181 24 C 0.350 3.650 25 N -0.412 5.412 26 C -0.024 4.024 27 C -0.030 4.030 28 N -0.478 5.478 29 C 0.193 3.807 30 N -0.498 5.498 31 C 0.157 3.843 32 H 0.268 0.732 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.181 0.819 36 H 0.196 0.804 37 H 0.410 0.590 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.151 0.849 41 H 0.146 0.854 42 H 0.183 0.817 43 H 0.177 0.823 44 H 0.212 0.788 45 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.898 -24.625 3.790 29.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.198 1.198 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.117 5.117 11 N -0.057 5.057 12 C -0.127 4.127 13 C -0.354 4.354 14 C 0.115 3.885 15 N -0.276 5.276 16 C 0.073 3.927 17 N -0.348 5.348 18 C 0.257 3.743 19 N -0.341 5.341 20 C 0.056 3.944 21 C -0.171 4.171 22 C -0.051 4.051 23 C -0.203 4.203 24 C 0.122 3.878 25 N -0.095 5.095 26 C -0.154 4.154 27 C -0.175 4.175 28 N -0.194 5.194 29 C -0.088 4.088 30 N -0.209 5.209 31 C -0.002 4.002 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.198 0.802 36 H 0.212 0.788 37 H 0.246 0.754 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.169 0.831 41 H 0.163 0.837 42 H 0.200 0.800 43 H 0.194 0.806 44 H 0.229 0.771 45 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 15.802 -24.082 3.232 28.984 hybrid contribution 0.135 0.996 -0.020 1.006 sum 15.937 -23.085 3.212 28.235 Atomic orbital electron populations 1.69915 1.06005 1.27672 1.49246 1.24893 0.94981 0.99361 0.94395 0.86340 0.79714 0.82203 0.78309 1.20342 1.20770 1.19762 1.21241 0.93551 0.89663 1.52875 0.92042 1.19812 0.85678 0.79835 1.00030 1.49487 1.35760 1.27686 0.98786 1.76956 1.11399 1.08000 1.09380 1.23357 0.99133 0.97946 0.92312 1.19608 1.12569 1.07915 0.95316 1.18942 0.91101 0.89906 0.88520 1.67516 1.29300 1.30799 1.00010 1.24420 0.85157 0.83918 0.99214 1.67929 1.26838 1.25674 1.14395 1.17845 0.84177 0.84021 0.88281 1.44286 1.46575 1.34374 1.08886 1.20019 0.94177 0.90482 0.89760 1.21039 0.96425 0.96574 1.03097 1.21517 1.00056 0.91524 0.92054 1.21588 0.92485 1.02515 1.03735 1.18263 0.87811 0.88282 0.93452 1.43179 1.09027 1.14188 1.43081 1.22984 0.83858 1.02832 1.05697 1.22442 0.99239 0.91291 1.04503 1.70348 0.98894 1.30525 1.19675 1.25368 1.00868 0.82752 0.99858 1.67071 1.38604 1.01103 1.14160 1.22644 0.89408 0.97399 0.90730 0.92232 0.92778 0.92210 0.80172 0.78773 0.75397 0.89960 0.89872 0.83140 0.83655 0.80000 0.80574 0.77142 0.81184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 2 C 0.07 1.87 5.46 -17.82 -0.10 1.77 16 3 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.07 9.39 -34.44 -0.32 -15.39 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.26 6.90 6.19 -5.19 -0.03 6.87 16 10 N -0.33 -7.70 3.63 -61.64 -0.22 -7.93 16 11 N -0.24 -5.01 12.45 30.80 0.38 -4.62 16 12 C 0.07 1.08 11.87 -17.11 -0.20 0.88 16 13 C -0.34 -5.69 6.14 -106.81 -0.66 -6.35 16 14 C 0.36 7.68 8.04 -156.23 -1.26 6.42 16 15 N -0.55 -11.08 10.47 -13.97 -0.15 -11.23 16 16 C 0.37 5.68 12.24 -92.12 -1.13 4.56 16 17 N -0.62 -8.72 9.69 -13.62 -0.13 -8.85 16 18 C 0.51 6.93 7.55 -154.86 -1.17 5.76 16 19 N -0.71 -6.23 5.67 -61.27 -0.35 -6.58 16 20 C 0.18 1.16 5.88 -5.20 -0.03 1.13 16 21 C -0.17 -0.88 5.27 -104.46 -0.55 -1.43 16 22 C -0.02 -0.11 9.85 -39.31 -0.39 -0.50 16 23 C -0.18 -0.87 9.50 -39.26 -0.37 -1.25 16 24 C 0.35 2.55 7.50 -154.37 -1.16 1.40 16 25 N -0.41 -3.22 2.98 -63.82 -0.19 -3.41 16 26 C -0.02 -0.19 11.18 -16.44 -0.18 -0.37 16 27 C -0.03 -0.25 11.85 -17.82 -0.21 -0.46 16 28 N -0.48 -4.53 11.24 -14.46 -0.16 -4.70 16 29 C 0.19 1.39 11.89 -89.58 -1.07 0.33 16 30 N -0.50 -3.95 9.90 -12.29 -0.12 -4.07 16 31 C 0.16 0.96 10.85 -17.56 -0.19 0.77 16 32 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.05 1.47 8.14 -51.93 -0.42 1.04 16 34 H 0.06 1.64 8.14 -51.92 -0.42 1.21 16 35 H 0.18 1.94 8.06 -52.49 -0.42 1.51 16 36 H 0.20 2.23 8.06 -52.49 -0.42 1.80 16 37 H 0.41 2.98 8.33 -40.82 -0.34 2.64 16 38 H 0.08 0.53 8.09 -51.93 -0.42 0.11 16 39 H 0.08 0.56 8.09 -51.93 -0.42 0.14 16 40 H 0.15 0.38 8.06 -52.48 -0.42 -0.04 16 41 H 0.15 0.33 6.78 -52.49 -0.36 -0.03 16 42 H 0.18 1.18 8.06 -52.49 -0.42 0.75 16 43 H 0.18 0.99 8.06 -52.49 -0.42 0.56 16 44 H 0.21 0.68 7.07 -52.48 -0.37 0.31 16 45 H 0.17 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 399.95 15.07 6.03 6.03 Total: -1.00 -36.04 399.95 -13.05 -49.09 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.83 Total: 0.41 kcal Atomic # 6 Polarization: 13.15 SS G_CDS: -9.01 Total: 4.13 kcal Atomic # 7 Polarization: -75.90 SS G_CDS: -0.20 Total: -76.10 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -36.04 -13.05 -49.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199777.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 281.717 kcal (2) G-P(sol) polarization free energy of solvation -36.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 245.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 232.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds