Wall clock time and date at job start Tue Mar 31 2020 06:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99987 * 2 1 4 4 H 1.48501 * 109.47161 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47134 * 300.00162 * 3 2 1 6 6 H 1.48505 * 109.47131 * 60.00088 * 3 2 1 7 7 C 1.37881 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99304 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99981 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.46758 * 180.02562 * 9 7 2 11 11 N 1.40058 * 125.87379 * 269.69043 * 10 9 7 12 12 C 1.30254 * 109.69545 * 180.26143 * 11 10 9 13 13 C 1.41163 * 108.47181 * 0.02562 * 12 11 10 14 14 C 1.36310 * 125.87150 * 90.00324 * 10 9 7 15 15 N 1.33196 * 134.62181 * 359.73526 * 14 10 9 16 16 C 1.31519 * 120.68311 * 179.97438 * 15 14 10 17 17 N 1.32107 * 122.65077 * 0.03711 * 16 15 14 18 18 C 1.32871 * 121.19301 * 359.97438 * 17 16 15 19 19 N 1.38219 * 120.81402 * 179.97438 * 18 17 16 20 20 C 1.39787 * 119.99903 * 5.78542 * 19 18 17 21 21 C 1.38936 * 120.07562 * 35.15294 * 20 19 18 22 22 C 1.38075 * 119.92543 * 179.97438 * 21 20 19 23 23 C 1.38317 * 120.07399 * 0.02562 * 22 21 20 24 24 C 1.38262 * 120.14630 * 359.95549 * 23 22 21 25 25 C 1.50704 * 119.95826 * 180.02562 * 24 23 22 26 26 N 1.46503 * 109.47118 * 90.00099 * 25 24 23 27 27 C 1.34426 * 126.82029 * 124.99733 * 26 25 24 28 28 N 1.30831 * 108.08011 * 179.97438 * 27 26 25 29 29 C 1.33247 * 109.82382 * 0.02562 * 28 27 26 30 30 N 1.30710 * 108.94765 * 359.75029 * 29 28 27 31 31 C 1.38120 * 120.07665 * 359.79168 * 24 23 22 32 32 H 0.97005 * 120.00318 * 359.97438 * 1 2 3 33 33 H 1.09007 * 109.46861 * 60.00617 * 9 7 2 34 34 H 1.08995 * 109.47337 * 300.00007 * 9 7 2 35 35 H 1.07997 * 125.76447 * 180.02562 * 12 11 10 36 36 H 1.07998 * 118.67172 * 180.02562 * 16 15 14 37 37 H 0.96997 * 120.00082 * 185.78131 * 19 18 17 38 38 H 1.07998 * 120.03229 * 0.02562 * 21 20 19 39 39 H 1.07998 * 119.96229 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.92461 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.47083 * 210.00058 * 25 24 23 42 42 H 1.08996 * 109.47480 * 330.00066 * 25 24 23 43 43 H 1.08003 * 125.96507 * 359.97438 * 27 26 25 44 44 H 1.07995 * 125.52538 * 179.97438 * 29 28 27 45 45 H 1.07998 * 120.03690 * 180.23449 * 31 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 7 2.7317 -4.2405 -1.1354 12 6 3.5419 -5.1937 -0.7725 13 6 3.5809 -5.2346 0.6380 14 6 2.7220 -4.2198 1.1040 15 7 2.5824 -4.0498 2.4177 16 6 3.2337 -4.8147 3.2664 17 7 4.0498 -5.7778 2.8767 18 6 4.2558 -6.0255 1.5876 19 7 5.1117 -7.0348 1.1886 20 6 5.6790 -7.8871 2.1403 21 6 4.9508 -8.2596 3.2634 22 6 5.5139 -9.1021 4.2012 23 6 6.8016 -9.5748 4.0238 24 6 7.5289 -9.2064 2.9070 25 6 8.9314 -9.7244 2.7177 26 7 8.8899 -10.9853 1.9728 27 6 9.5447 -11.2700 0.8339 28 7 9.2454 -12.4961 0.4890 29 6 8.4055 -13.0235 1.3790 30 7 8.1620 -12.1382 2.3093 31 6 6.9697 -8.3681 1.9624 32 1 -0.4851 0.8401 0.0004 33 1 0.6240 -2.5567 -0.8904 34 1 0.6247 -2.5571 0.8896 35 1 4.0910 -5.8430 -1.4382 36 1 3.0960 -4.6488 4.3246 37 1 5.3188 -7.1516 0.2482 38 1 3.9451 -7.8912 3.4022 39 1 4.9483 -9.3924 5.0742 40 1 7.2399 -10.2334 4.7590 41 1 9.5169 -8.9927 2.1611 42 1 9.3911 -9.8928 3.6915 43 1 10.2032 -10.6031 0.2971 44 1 7.9956 -14.0218 1.3400 45 1 7.5369 -8.0838 1.0885 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:33 Heat of formation + Delta-G solvation = 249.579818 kcal Electronic energy + Delta-G solvation = -31793.827522 eV Core-core repulsion = 27429.530419 eV Total energy + Delta-G solvation = -4364.297103 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.146 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.37662 -41.63464 -39.97516 -38.49233 -36.58264 -34.70918 -33.81681 -32.53319 -31.59811 -31.49010 -31.21100 -30.63602 -28.79215 -27.31722 -26.94620 -24.23156 -23.90606 -22.99160 -22.79387 -22.37207 -22.02232 -21.33143 -20.04271 -18.38202 -17.95432 -17.57104 -16.87616 -16.68311 -16.51537 -16.34935 -15.89468 -15.54807 -15.22223 -15.07748 -14.74734 -14.47595 -14.32340 -14.17063 -13.87079 -13.72273 -13.57118 -13.39197 -13.13348 -12.88910 -12.27809 -12.26799 -11.88674 -11.83200 -11.74477 -11.37326 -11.12086 -11.07856 -10.85061 -10.40085 -10.35064 -10.24674 -10.16640 -10.13887 -10.05144 -9.71784 -9.16317 -8.92283 -8.79767 -8.65924 -8.23800 -7.67551 -6.27847 -4.34651 0.82079 0.94387 1.30164 1.36462 1.77610 2.11225 2.64636 2.70489 2.86055 2.94469 3.19304 3.26583 3.32577 3.57052 3.93373 3.98938 4.20476 4.24733 4.28091 4.37534 4.53483 4.59625 4.63567 4.71025 4.76320 4.90462 4.94663 4.99078 5.07759 5.13392 5.25953 5.36061 5.54780 5.56477 5.65620 5.86643 6.06744 6.10204 6.13383 6.20487 6.32006 6.41210 6.49474 6.62309 6.86080 6.95583 6.98995 7.07796 7.35006 7.62509 7.73973 7.76275 7.83804 8.07828 8.59592 8.69741 9.30756 10.80450 Molecular weight = 376.15amu Principal moments of inertia in cm(-1) A = 0.018530 B = 0.001692 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.704353 B =16543.966522 C =17000.928468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.262 3.738 10 N -0.329 5.329 11 N -0.236 5.236 12 C 0.067 3.933 13 C -0.328 4.328 14 C 0.364 3.636 15 N -0.544 5.544 16 C 0.363 3.637 17 N -0.604 5.604 18 C 0.499 3.501 19 N -0.649 5.649 20 C 0.166 3.834 21 C -0.096 4.096 22 C -0.103 4.103 23 C -0.103 4.103 24 C -0.099 4.099 25 C 0.174 3.826 26 N -0.373 5.373 27 C 0.251 3.749 28 N -0.549 5.549 29 C 0.193 3.807 30 N -0.308 5.308 31 C -0.133 4.133 32 H 0.268 0.732 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.184 0.816 36 H 0.199 0.801 37 H 0.419 0.581 38 H 0.138 0.862 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.217 0.783 44 H 0.215 0.785 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.657 -22.284 6.254 29.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.137 4.137 3 Si 0.735 3.265 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.115 5.115 11 N -0.052 5.052 12 C -0.129 4.129 13 C -0.346 4.346 14 C 0.115 3.885 15 N -0.268 5.268 16 C 0.070 3.930 17 N -0.333 5.333 18 C 0.249 3.751 19 N -0.274 5.274 20 C 0.070 3.930 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.123 4.123 24 C -0.101 4.101 25 C 0.052 3.948 26 N -0.164 5.164 27 C -0.046 4.046 28 N -0.276 5.276 29 C -0.110 4.110 30 N -0.136 5.136 31 C -0.154 4.154 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.201 0.799 36 H 0.215 0.785 37 H 0.257 0.743 38 H 0.156 0.844 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.128 0.872 42 H 0.117 0.883 43 H 0.234 0.766 44 H 0.231 0.769 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 16.263 -21.344 6.549 27.622 hybrid contribution 1.047 0.743 -0.672 1.449 sum 17.310 -20.602 5.877 27.542 Atomic orbital electron populations 1.69923 1.06009 1.27622 1.49210 1.24903 0.94995 0.99406 0.94373 0.86278 0.79905 0.82476 0.77855 1.19710 1.20602 1.20534 1.21264 0.93573 0.89593 1.52901 0.91978 1.19853 0.85647 0.79794 1.00142 1.49525 1.35764 1.27572 0.98685 1.76970 1.11215 1.07634 1.09357 1.23409 0.99305 0.97977 0.92171 1.19597 1.11841 1.07728 0.95398 1.18944 0.91162 0.89841 0.88556 1.67533 1.29014 1.30209 0.99996 1.24514 0.85301 0.83867 0.99360 1.68077 1.25808 1.25135 1.14232 1.17853 0.84728 0.83977 0.88559 1.41774 1.46873 1.29763 1.09005 1.17565 0.91565 0.92344 0.91524 1.21249 1.00709 0.96040 0.93667 1.21015 0.95137 0.96973 0.99017 1.20919 0.94706 0.99410 0.97248 1.19307 0.95301 0.99451 0.95992 1.20688 0.95427 0.80688 0.97958 1.50680 1.34225 1.11786 1.19715 1.26093 0.96718 0.94456 0.87343 1.70542 1.19029 1.07925 1.30098 1.26017 0.95625 1.00452 0.88924 1.78088 1.17792 0.93405 1.24290 1.20655 0.93376 1.01200 1.00203 0.92243 0.92646 0.92148 0.79877 0.78501 0.74290 0.84395 0.85539 0.86029 0.87189 0.88305 0.76638 0.76887 0.86005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.34 13.29 55.43 0.74 -24.61 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -14.97 9.39 -34.44 -0.32 -15.30 16 8 H 0.06 1.79 7.81 -52.48 -0.41 1.38 16 9 C 0.26 6.83 6.19 -5.19 -0.03 6.80 16 10 N -0.33 -7.61 3.63 -61.64 -0.22 -7.84 16 11 N -0.24 -4.86 12.45 30.80 0.38 -4.47 16 12 C 0.07 1.06 11.88 -17.11 -0.20 0.86 16 13 C -0.33 -5.63 6.14 -106.82 -0.66 -6.29 16 14 C 0.36 7.67 8.04 -156.23 -1.26 6.42 16 15 N -0.54 -10.91 10.47 -13.97 -0.15 -11.06 16 16 C 0.36 5.70 12.24 -92.12 -1.13 4.58 16 17 N -0.60 -8.96 7.42 -13.60 -0.10 -9.06 16 18 C 0.50 7.28 7.25 -154.74 -1.12 6.16 16 19 N -0.65 -7.07 5.45 -9.67 -0.05 -7.12 16 20 C 0.17 1.73 6.26 -83.73 -0.52 1.21 16 21 C -0.10 -1.04 8.59 -39.38 -0.34 -1.37 16 22 C -0.10 -0.93 10.04 -39.61 -0.40 -1.33 16 23 C -0.10 -0.85 9.70 -39.54 -0.38 -1.23 16 24 C -0.10 -0.75 5.34 -104.65 -0.56 -1.31 16 25 C 0.17 0.86 6.67 -5.19 -0.03 0.83 16 26 N -0.37 -2.68 3.68 -63.81 -0.23 -2.92 16 27 C 0.25 1.62 12.63 -90.66 -1.14 0.48 16 28 N -0.55 -4.98 11.19 -15.83 -0.18 -5.16 16 29 C 0.19 1.66 13.03 -91.81 -1.20 0.46 16 30 N -0.31 -2.93 12.56 29.29 0.37 -2.56 16 31 C -0.13 -1.11 9.62 -39.39 -0.38 -1.49 16 32 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 33 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 35 H 0.18 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.20 2.30 8.06 -52.49 -0.42 1.87 16 37 H 0.42 3.48 8.70 -40.82 -0.36 3.13 16 38 H 0.14 1.67 6.45 -52.49 -0.34 1.33 16 39 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 41 H 0.11 0.22 8.03 -51.93 -0.42 -0.19 16 42 H 0.10 0.39 8.08 -51.93 -0.42 -0.03 16 43 H 0.22 0.43 8.06 -52.48 -0.42 0.01 16 44 H 0.21 1.16 8.06 -52.49 -0.42 0.74 16 45 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 LS Contribution 399.56 15.07 6.02 6.02 Total: -1.00 -36.13 399.56 -13.10 -49.23 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -4.88 Total: 1.97 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -9.78 Total: 1.22 kcal Atomic # 7 Polarization: -75.35 SS G_CDS: 0.55 Total: -74.80 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -36.13 -13.10 -49.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 298.812 kcal (2) G-P(sol) polarization free energy of solvation -36.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 262.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 249.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds