Wall clock time and date at job start Tue Mar 31 2020 06:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 119.99987 * 2 1 4 4 H 1.48501 * 109.47161 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47134 * 300.00162 * 3 2 1 6 6 H 1.48505 * 109.47131 * 60.00088 * 3 2 1 7 7 C 1.37881 * 119.99793 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99304 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99981 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.46758 * 180.02562 * 9 7 2 11 11 N 1.40058 * 125.87379 * 269.69043 * 10 9 7 12 12 C 1.30254 * 109.69545 * 180.26143 * 11 10 9 13 13 C 1.41163 * 108.47181 * 0.02562 * 12 11 10 14 14 C 1.36310 * 125.87150 * 90.00324 * 10 9 7 15 15 N 1.33196 * 134.62181 * 359.73526 * 14 10 9 16 16 C 1.31519 * 120.68311 * 179.97438 * 15 14 10 17 17 N 1.32107 * 122.65077 * 0.03711 * 16 15 14 18 18 C 1.32871 * 121.19301 * 359.97438 * 17 16 15 19 19 N 1.38219 * 120.81402 * 179.97438 * 18 17 16 20 20 C 1.39787 * 119.99903 * 5.78542 * 19 18 17 21 21 C 1.38936 * 120.07562 * 35.15294 * 20 19 18 22 22 C 1.38075 * 119.92543 * 179.97438 * 21 20 19 23 23 C 1.38317 * 120.07399 * 0.02562 * 22 21 20 24 24 C 1.38262 * 120.14630 * 359.95549 * 23 22 21 25 25 C 1.50704 * 119.95826 * 180.02562 * 24 23 22 26 26 N 1.46503 * 109.47118 * 90.00099 * 25 24 23 27 27 C 1.34426 * 126.82029 * 124.99733 * 26 25 24 28 28 N 1.30831 * 108.08011 * 179.97438 * 27 26 25 29 29 C 1.33247 * 109.82382 * 0.02562 * 28 27 26 30 30 N 1.30710 * 108.94765 * 359.75029 * 29 28 27 31 31 C 1.38120 * 120.07665 * 359.79168 * 24 23 22 32 32 H 0.97005 * 120.00318 * 359.97438 * 1 2 3 33 33 H 1.09007 * 109.46861 * 60.00617 * 9 7 2 34 34 H 1.08995 * 109.47337 * 300.00007 * 9 7 2 35 35 H 1.07997 * 125.76447 * 180.02562 * 12 11 10 36 36 H 1.07998 * 118.67172 * 180.02562 * 16 15 14 37 37 H 0.96997 * 120.00082 * 185.78131 * 19 18 17 38 38 H 1.07998 * 120.03229 * 0.02562 * 21 20 19 39 39 H 1.07998 * 119.96229 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.92461 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.47083 * 210.00058 * 25 24 23 42 42 H 1.08996 * 109.47480 * 330.00066 * 25 24 23 43 43 H 1.08003 * 125.96507 * 359.97438 * 27 26 25 44 44 H 1.07995 * 125.52538 * 179.97438 * 29 28 27 45 45 H 1.07998 * 120.03690 * 180.23449 * 31 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 7 2.7317 -4.2405 -1.1354 12 6 3.5419 -5.1937 -0.7725 13 6 3.5809 -5.2346 0.6380 14 6 2.7220 -4.2198 1.1040 15 7 2.5824 -4.0498 2.4177 16 6 3.2337 -4.8147 3.2664 17 7 4.0498 -5.7778 2.8767 18 6 4.2558 -6.0255 1.5876 19 7 5.1117 -7.0348 1.1886 20 6 5.6790 -7.8871 2.1403 21 6 4.9508 -8.2596 3.2634 22 6 5.5139 -9.1021 4.2012 23 6 6.8016 -9.5748 4.0238 24 6 7.5289 -9.2064 2.9070 25 6 8.9314 -9.7244 2.7177 26 7 8.8899 -10.9853 1.9728 27 6 9.5447 -11.2700 0.8339 28 7 9.2454 -12.4961 0.4890 29 6 8.4055 -13.0235 1.3790 30 7 8.1620 -12.1382 2.3093 31 6 6.9697 -8.3681 1.9624 32 1 -0.4851 0.8401 0.0004 33 1 0.6240 -2.5567 -0.8904 34 1 0.6247 -2.5571 0.8896 35 1 4.0910 -5.8430 -1.4382 36 1 3.0960 -4.6488 4.3246 37 1 5.3188 -7.1516 0.2482 38 1 3.9451 -7.8912 3.4022 39 1 4.9483 -9.3924 5.0742 40 1 7.2399 -10.2334 4.7590 41 1 9.5169 -8.9927 2.1611 42 1 9.3911 -9.8928 3.6915 43 1 10.2032 -10.6031 0.2971 44 1 7.9956 -14.0218 1.3400 45 1 7.5369 -8.0838 1.0885 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097200350.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:32 Heat of formation + Delta-G solvation = 230.503082 kcal Electronic energy + Delta-G solvation = -31794.654752 eV Core-core repulsion = 27429.530419 eV Total energy + Delta-G solvation = -4365.124332 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.146 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.98220 -42.87966 -40.82633 -39.69641 -37.54088 -35.80730 -35.24946 -33.93028 -33.07608 -32.12904 -31.86862 -31.75549 -29.85516 -29.10899 -27.50503 -25.63166 -25.43655 -24.24261 -23.56125 -23.07464 -22.68576 -22.19733 -21.24635 -19.57331 -19.06157 -18.84179 -18.15203 -17.87965 -17.60420 -17.12877 -16.77350 -16.67897 -16.40732 -16.11407 -15.69797 -15.49018 -15.29716 -15.07297 -14.96623 -14.91597 -14.67595 -14.22740 -14.18430 -13.83727 -13.71373 -13.52034 -13.07765 -12.93042 -12.77856 -12.74476 -12.58747 -12.40212 -12.34147 -12.04448 -11.85704 -11.59934 -11.12737 -10.93313 -10.77748 -10.70765 -10.56543 -10.17310 -10.13300 -9.77166 -9.69028 -8.73607 -8.37595 -6.54601 -0.27624 0.23267 0.32230 0.65289 0.82460 1.28833 1.34041 1.35348 1.48568 1.55475 1.64854 1.81311 2.10914 2.30050 2.81639 2.92235 2.98694 3.15161 3.31048 3.48737 3.52734 3.62628 3.66160 3.82889 3.97626 4.04391 4.19619 4.23953 4.31734 4.40440 4.46035 4.54956 4.61877 4.74471 4.81955 4.82886 5.01670 5.13985 5.33529 5.36359 5.44203 5.46560 5.48026 5.56045 5.63622 5.69155 5.75149 5.80059 6.00025 6.01557 6.13850 6.48496 6.51285 6.68803 7.14971 7.22630 7.33232 8.70267 Molecular weight = 376.15amu Principal moments of inertia in cm(-1) A = 0.018530 B = 0.001692 C = 0.001647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.704353 B =16543.966522 C =17000.928468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.019 3.981 3 Si 0.976 3.024 4 H -0.273 1.273 5 H -0.268 1.268 6 H -0.269 1.269 7 C -0.551 4.551 8 H 0.046 0.954 9 C 0.283 3.717 10 N -0.364 5.364 11 N -0.284 5.284 12 C 0.100 3.900 13 C -0.336 4.336 14 C 0.338 3.662 15 N -0.595 5.595 16 C 0.373 3.627 17 N -0.600 5.600 18 C 0.511 3.489 19 N -0.627 5.627 20 C 0.140 3.860 21 C -0.113 4.113 22 C -0.110 4.110 23 C -0.104 4.104 24 C -0.097 4.097 25 C 0.171 3.829 26 N -0.375 5.375 27 C 0.258 3.742 28 N -0.583 5.583 29 C 0.184 3.816 30 N -0.342 5.342 31 C -0.124 4.124 32 H 0.274 0.726 33 H 0.032 0.968 34 H 0.034 0.966 35 H 0.242 0.758 36 H 0.233 0.767 37 H 0.433 0.567 38 H 0.120 0.880 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.148 0.852 42 H 0.110 0.890 43 H 0.259 0.741 44 H 0.230 0.770 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.441 -23.478 6.348 32.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.182 4.182 3 Si 0.800 3.200 4 H -0.198 1.198 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.590 4.590 8 H 0.065 0.935 9 C 0.165 3.835 10 N -0.151 5.151 11 N -0.099 5.099 12 C -0.095 4.095 13 C -0.353 4.353 14 C 0.090 3.910 15 N -0.321 5.321 16 C 0.081 3.919 17 N -0.328 5.328 18 C 0.259 3.741 19 N -0.253 5.253 20 C 0.046 3.954 21 C -0.134 4.134 22 C -0.129 4.129 23 C -0.123 4.123 24 C -0.099 4.099 25 C 0.050 3.950 26 N -0.166 5.166 27 C -0.038 4.038 28 N -0.311 5.311 29 C -0.119 4.119 30 N -0.170 5.170 31 C -0.145 4.145 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.258 0.742 36 H 0.249 0.751 37 H 0.274 0.726 38 H 0.138 0.862 39 H 0.155 0.845 40 H 0.151 0.849 41 H 0.166 0.834 42 H 0.128 0.872 43 H 0.275 0.725 44 H 0.246 0.754 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 20.093 -22.606 6.644 30.967 hybrid contribution 0.049 0.820 -0.556 0.992 sum 20.142 -21.787 6.088 30.289 Atomic orbital electron populations 1.70017 1.07381 1.28866 1.49442 1.25801 0.95909 1.02883 0.93562 0.85244 0.78261 0.77997 0.78548 1.19811 1.19286 1.19441 1.21402 0.92901 0.91091 1.53580 0.93523 1.19161 0.85930 0.80846 0.97594 1.49126 1.37214 1.28374 1.00337 1.76917 1.13886 1.09979 1.09081 1.24327 0.96642 0.96074 0.92473 1.19685 1.11916 1.07498 0.96208 1.19347 0.91980 0.90818 0.88815 1.67545 1.31536 1.32705 1.00278 1.25255 0.83730 0.82630 1.00274 1.68259 1.25653 1.24693 1.14240 1.17929 0.84335 0.83916 0.87918 1.41728 1.45236 1.28274 1.10088 1.17744 0.92734 0.93274 0.91655 1.21211 1.00286 0.97236 0.94697 1.21181 0.95806 0.96748 0.99137 1.21178 0.94338 0.98962 0.97840 1.19619 0.96537 0.98527 0.95171 1.20977 0.94096 0.80518 0.99363 1.50758 1.34044 1.11694 1.20083 1.26907 0.95998 0.94164 0.86714 1.70548 1.20021 1.09496 1.31044 1.26434 0.95518 1.01205 0.88729 1.78016 1.19231 0.94521 1.25230 1.20918 0.92431 1.00217 1.00963 0.91684 0.94957 0.94844 0.74179 0.75142 0.72603 0.86229 0.84503 0.84902 0.83409 0.87170 0.72522 0.75351 0.83390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.05 13.29 21.45 0.28 -53.77 16 2 C 0.02 1.10 5.46 84.66 0.46 1.56 16 3 Si 0.98 44.52 29.54 68.60 2.03 46.54 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.55 -32.43 9.39 25.60 0.24 -32.18 16 8 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 9 C 0.28 15.88 6.19 85.63 0.53 16.41 16 10 N -0.36 -17.80 3.63 -348.93 -1.27 -19.06 16 11 N -0.28 -11.97 12.45 -56.46 -0.70 -12.67 16 12 C 0.10 3.07 11.88 85.65 1.02 4.08 16 13 C -0.34 -11.34 6.14 -21.29 -0.13 -11.47 16 14 C 0.34 14.80 8.04 134.15 1.08 15.88 16 15 N -0.59 -24.79 10.47 -198.11 -2.07 -26.87 16 16 C 0.37 11.72 12.24 180.87 2.21 13.93 16 17 N -0.60 -17.25 7.42 -196.93 -1.46 -18.71 16 18 C 0.51 14.16 7.25 133.60 0.97 15.13 16 19 N -0.63 -11.95 5.45 -184.49 -1.01 -12.95 16 20 C 0.14 2.56 6.26 38.19 0.24 2.80 16 21 C -0.11 -2.29 8.59 22.40 0.19 -2.10 16 22 C -0.11 -1.82 10.04 22.25 0.22 -1.60 16 23 C -0.10 -1.44 9.70 22.29 0.22 -1.22 16 24 C -0.10 -1.11 5.34 -19.89 -0.11 -1.22 16 25 C 0.17 0.94 6.67 85.63 0.57 1.51 16 26 N -0.38 -4.08 3.68 -355.80 -1.31 -5.39 16 27 C 0.26 2.39 12.63 180.36 2.28 4.67 16 28 N -0.58 -9.29 11.19 -204.00 -2.28 -11.57 16 29 C 0.18 2.89 13.03 180.76 2.36 5.24 16 30 N -0.34 -5.79 12.56 -61.25 -0.77 -6.56 16 31 C -0.12 -1.59 9.62 22.40 0.22 -1.37 16 32 H 0.27 14.92 8.31 -92.70 -0.77 14.14 16 33 H 0.03 1.89 8.14 -2.38 -0.02 1.88 16 34 H 0.03 2.00 8.14 -2.39 -0.02 1.98 16 35 H 0.24 4.10 8.06 -2.91 -0.02 4.07 16 36 H 0.23 5.20 8.06 -2.91 -0.02 5.18 16 37 H 0.43 5.56 8.70 -92.71 -0.81 4.75 16 38 H 0.12 2.83 6.45 -2.91 -0.02 2.82 16 39 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 40 H 0.13 1.52 8.06 -2.91 -0.02 1.50 16 41 H 0.15 -0.28 8.03 -2.39 -0.02 -0.30 16 42 H 0.11 0.41 8.08 -2.39 -0.02 0.39 16 43 H 0.26 -0.29 8.06 -2.91 -0.02 -0.32 16 44 H 0.23 2.28 8.06 -2.91 -0.02 2.26 16 45 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 Total: -1.00 -84.86 399.56 4.27 -80.60 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: 0.26 Total: 10.37 kcal Atomic # 6 Polarization: 17.48 SS G_CDS: 12.57 Total: 30.04 kcal Atomic # 7 Polarization: -156.96 SS G_CDS: -10.59 Total: -167.55 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.54 kcal Total: -84.86 4.27 -80.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200350.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 311.101 kcal (2) G-P(sol) polarization free energy of solvation -84.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 226.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 230.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds