Wall clock time and date at job start Tue Mar 31 2020 06:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35953 * 116.99536 * 2 1 4 4 C 1.38037 * 120.00084 * 0.02562 * 3 2 1 5 5 C 1.40055 * 119.83301 * 179.97438 * 4 3 2 6 6 C 1.46835 * 120.08210 * 180.02562 * 5 4 3 7 7 C 1.35295 * 119.99962 * 136.61465 * 6 5 4 8 8 C 1.41766 * 119.99819 * 348.26706 * 7 6 5 9 9 O 1.21774 * 120.00587 * 353.42880 * 8 7 6 10 10 C 1.47822 * 119.99914 * 173.42437 * 8 7 6 11 11 C 1.39691 * 120.11690 * 180.02562 * 10 8 7 12 12 C 1.37818 * 119.90300 * 180.02562 * 11 10 8 13 13 C 1.38660 * 120.13503 * 0.02562 * 12 11 10 14 14 F 1.35097 * 119.88393 * 179.97438 * 13 12 11 15 15 C 1.38759 * 120.23211 * 359.97438 * 13 12 11 16 16 Cl 1.73601 * 119.95431 * 179.97438 * 15 13 12 17 17 C 1.37951 * 120.09458 * 0.25457 * 15 13 12 18 18 C 1.40113 * 119.83329 * 0.27796 * 5 4 3 19 19 C 1.37606 * 119.99481 * 359.39721 * 18 5 4 20 20 C 1.39098 * 120.16346 * 0.62499 * 19 18 5 21 21 O 1.35589 * 119.91518 * 179.69259 * 20 19 18 22 22 C 1.34735 * 116.99945 * 354.36985 * 21 20 19 23 23 H 1.07998 * 119.99812 * 5.05047 * 22 21 20 24 24 C 1.38751 * 120.00140 * 185.05533 * 22 21 20 25 25 N 1.31489 * 119.99842 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 119.99463 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.47363 * 90.00399 * 26 24 22 28 28 H 1.48507 * 109.46698 * 210.00147 * 26 24 22 29 29 H 1.48502 * 109.47234 * 329.99648 * 26 24 22 30 30 H 1.09001 * 109.46562 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46857 * 299.99670 * 1 2 3 32 32 H 1.08998 * 109.47432 * 59.99906 * 1 2 3 33 33 H 1.07992 * 120.08103 * 359.97438 * 4 3 2 34 34 H 1.08002 * 119.99315 * 316.60536 * 6 5 4 35 35 H 1.08004 * 120.00114 * 168.27819 * 7 6 5 36 36 H 1.07997 * 120.04931 * 359.97438 * 11 10 8 37 37 H 1.08004 * 119.93301 * 179.97438 * 12 11 10 38 38 H 1.08005 * 120.07165 * 179.72258 * 17 15 13 39 39 H 1.08000 * 120.00344 * 179.72460 * 18 5 4 40 40 H 1.08003 * 119.91964 * 180.33951 * 19 18 5 41 41 H 0.97006 * 119.99487 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2943 2.3690 0.0005 5 6 1.9337 3.6151 0.0011 6 6 1.1392 4.8500 0.0022 7 6 1.4897 5.8791 0.8076 8 6 2.4599 5.6858 1.8230 9 8 2.8901 4.5694 2.0498 10 6 2.9496 6.8397 2.6065 11 6 3.9060 6.6522 3.6073 12 6 4.3591 7.7310 4.3355 13 6 3.8672 9.0014 4.0770 14 9 4.3145 10.0552 4.7942 15 6 2.9171 9.1941 3.0842 16 17 2.3057 10.7876 2.7671 17 6 2.4534 8.1203 2.3527 18 6 3.3333 3.6804 -0.0048 19 6 4.0760 2.5220 0.0014 20 6 3.4409 1.2845 0.0004 21 8 4.1777 0.1463 0.0003 22 6 5.5130 0.2821 -0.1167 23 1 5.9572 1.2665 -0.1227 24 6 6.3175 -0.8428 -0.2295 25 7 7.6208 -0.7102 -0.3431 26 14 5.5492 -2.5454 -0.2184 27 1 5.2181 -2.9481 -1.6089 28 1 6.5091 -3.5178 0.3633 29 1 4.3097 -2.5239 0.5992 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 0.2158 2.3140 0.0005 34 1 0.2752 4.9367 -0.6400 35 1 1.0302 6.8477 0.6770 36 1 4.2892 5.6632 3.8106 37 1 5.0983 7.5865 5.1096 38 1 1.7106 8.2700 1.5831 39 1 3.8291 4.6398 -0.0089 40 1 5.1548 2.5738 0.0024 41 1 8.1832 -1.4966 -0.4223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098008727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:02 Heat of formation + Delta-G solvation = -55.669178 kcal Electronic energy + Delta-G solvation = -30255.345069 eV Core-core repulsion = 25622.747217 eV Total energy + Delta-G solvation = -4632.597852 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 376.071 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.37929 -40.48247 -39.66306 -38.54304 -37.75555 -36.90759 -36.18054 -33.31211 -32.44505 -31.61268 -31.04999 -29.67754 -28.85065 -26.75740 -25.64391 -24.71139 -23.67266 -22.58631 -21.63451 -21.04415 -19.04423 -18.43262 -17.98927 -17.80010 -17.05214 -16.79335 -16.28634 -16.16341 -15.72969 -15.33876 -15.26036 -14.85555 -14.58016 -14.44460 -14.21335 -13.93186 -13.76846 -13.71168 -13.66384 -13.32380 -13.18423 -13.01742 -12.83467 -12.32555 -12.23411 -11.83269 -11.81005 -11.62778 -11.53964 -11.41497 -11.15137 -10.88820 -10.78614 -10.59434 -10.24548 -9.66905 -9.47743 -9.46451 -9.26878 -9.07785 -8.81501 -7.96553 -6.89381 -6.49921 -4.09250 0.07209 0.63113 0.95698 1.57178 2.08700 2.35697 2.77555 3.21762 3.25800 3.44176 3.56209 3.59611 3.87703 3.99638 4.18831 4.21931 4.42538 4.60735 4.67548 4.69434 4.96855 5.03256 5.07673 5.11310 5.33667 5.36564 5.41019 5.44428 5.48088 5.51918 5.64828 5.68516 5.72817 5.84823 6.07720 6.11275 6.20562 6.25712 6.43086 6.50358 6.83362 6.95985 7.22243 7.44020 7.59847 7.72350 7.88245 8.09372 8.84541 9.48472 10.56412 Molecular weight = 376.07amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.002143 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.866166 B =13063.123795 C =14654.098869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.310 6.310 3 C 0.039 3.961 4 C -0.131 4.131 5 C -0.162 4.162 6 C 0.046 3.954 7 C -0.291 4.291 8 C 0.413 3.587 9 O -0.422 6.422 10 C -0.148 4.148 11 C -0.033 4.033 12 C -0.151 4.151 13 C 0.128 3.872 14 F -0.124 7.124 15 C -0.088 4.088 16 Cl -0.049 7.049 17 C -0.043 4.043 18 C -0.019 4.019 19 C -0.207 4.207 20 C 0.160 3.840 21 O -0.193 6.193 22 C -0.386 4.386 23 H 0.109 0.891 24 C 0.066 3.934 25 N -0.870 5.870 26 Si 0.904 3.096 27 H -0.272 1.272 28 H -0.282 1.282 29 H -0.254 1.254 30 H 0.090 0.910 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.153 0.847 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.105 0.895 40 H 0.140 0.860 41 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.378 17.817 4.752 22.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.224 6.224 3 C -0.005 4.005 4 C -0.151 4.151 5 C -0.163 4.163 6 C 0.027 3.973 7 C -0.310 4.310 8 C 0.294 3.706 9 O -0.300 6.300 10 C -0.149 4.149 11 C -0.051 4.051 12 C -0.170 4.170 13 C 0.108 3.892 14 F -0.103 7.103 15 C -0.116 4.116 16 Cl -0.020 7.020 17 C -0.062 4.062 18 C -0.037 4.037 19 C -0.226 4.226 20 C 0.106 3.894 21 O -0.097 6.097 22 C -0.461 4.461 23 H 0.127 0.873 24 C -0.139 4.139 25 N -0.507 5.507 26 Si 0.729 3.271 27 H -0.197 1.197 28 H -0.207 1.207 29 H -0.178 1.178 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.138 0.862 34 H 0.142 0.858 35 H 0.146 0.854 36 H 0.171 0.829 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.123 0.877 40 H 0.157 0.843 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.905 16.854 4.877 21.781 hybrid contribution -0.315 0.209 0.167 0.413 sum -13.221 17.063 5.044 22.167 Atomic orbital electron populations 1.22883 0.80263 1.02906 1.00379 1.86169 1.19544 1.26548 1.90186 1.17924 0.89209 0.84457 1.08950 1.20699 0.98190 0.90777 1.05398 1.18141 0.92944 0.91404 1.13809 1.22567 0.93164 0.90919 0.90604 1.22182 1.06518 1.00627 1.01658 1.19017 0.81102 0.87233 0.83281 1.90887 1.51051 1.24667 1.63357 1.20851 0.99676 0.94844 0.99535 1.21453 0.92603 0.99812 0.91243 1.21175 1.02836 0.90080 1.02932 1.17682 0.95169 0.84726 0.91611 1.91554 1.87530 1.55284 1.75907 1.20893 1.01208 0.88666 1.00788 1.98395 1.86475 1.22204 1.94942 1.21264 0.97857 0.89729 0.97319 1.20609 0.91897 0.96927 0.94303 1.20882 1.00964 0.90560 1.10182 1.18588 0.87676 0.86897 0.96278 1.83568 1.20330 1.27562 1.78201 1.20888 0.77288 0.97085 1.50820 0.87338 1.24501 0.94520 0.99603 0.95273 1.69619 1.03153 1.31853 1.46037 0.86180 0.79863 0.81540 0.79503 1.19730 1.20737 1.17801 0.89142 0.93514 0.93479 0.86166 0.85761 0.85432 0.82893 0.83152 0.83038 0.87736 0.84259 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.81 101.05 0.99 1.41 16 2 O -0.31 -6.21 10.28 -34.20 -0.35 -6.56 16 3 C 0.04 0.81 6.70 -39.12 -0.26 0.55 16 4 C -0.13 -2.23 8.78 -38.97 -0.34 -2.57 16 5 C -0.16 -2.64 4.49 -105.04 -0.47 -3.11 16 6 C 0.05 0.55 9.80 -37.16 -0.36 0.19 16 7 C -0.29 -3.13 9.22 -39.28 -0.36 -3.49 16 8 C 0.41 5.31 5.97 -34.32 -0.20 5.11 16 9 O -0.42 -7.08 12.05 5.12 0.06 -7.02 16 10 C -0.15 -1.59 5.88 -104.90 -0.62 -2.20 16 11 C -0.03 -0.34 9.59 -39.19 -0.38 -0.72 16 12 C -0.15 -1.37 10.01 -39.58 -0.40 -1.77 16 13 C 0.13 1.26 7.28 -39.23 -0.29 0.97 16 14 F -0.12 -1.28 16.83 2.25 0.04 -1.25 16 15 C -0.09 -0.83 6.32 -39.49 -0.25 -1.08 16 16 Cl -0.05 -0.44 28.60 -51.86 -1.48 -1.92 16 17 C -0.04 -0.38 9.21 -39.16 -0.36 -0.75 16 18 C -0.02 -0.34 6.63 -39.11 -0.26 -0.60 16 19 C -0.21 -4.48 9.14 -39.49 -0.36 -4.84 16 20 C 0.16 3.78 6.67 -38.73 -0.26 3.52 16 21 O -0.19 -5.20 8.35 -13.80 -0.12 -5.32 16 22 C -0.39 -10.81 9.94 30.92 0.31 -10.50 16 23 H 0.11 3.07 5.41 -52.49 -0.28 2.79 16 24 C 0.07 1.83 5.50 -17.51 -0.10 1.74 16 25 N -0.87 -24.76 13.96 55.48 0.77 -23.99 16 26 Si 0.90 21.80 28.62 -169.99 -4.86 16.93 16 27 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 29 H -0.25 -6.28 7.11 56.52 0.40 -5.88 16 30 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.05 0.56 7.66 -51.93 -0.40 0.17 16 32 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 33 H 0.12 1.64 6.28 -52.49 -0.33 1.31 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 35 H 0.13 0.93 6.26 -52.48 -0.33 0.61 16 36 H 0.15 1.62 7.65 -52.49 -0.40 1.21 16 37 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 38 H 0.15 1.02 6.22 -52.48 -0.33 0.69 16 39 H 0.10 1.74 7.04 -52.49 -0.37 1.37 16 40 H 0.14 3.14 5.62 -52.48 -0.29 2.85 16 41 H 0.28 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 373.30 15.07 5.63 5.63 Total: -1.00 -31.78 373.30 -7.81 -39.59 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -3.53 Total: 2.04 kcal Atomic # 6 Polarization: -14.17 SS G_CDS: -3.97 Total: -18.14 kcal Atomic # 7 Polarization: -24.76 SS G_CDS: 0.77 Total: -23.99 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.40 Total: -18.90 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.86 Total: 16.93 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.48 Total: -1.92 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -31.78 -7.81 -39.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098008727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.075 kcal (2) G-P(sol) polarization free energy of solvation -31.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds