Wall clock time and date at job start Tue Mar 31 2020 06:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35953 * 116.99536 * 2 1 4 4 C 1.38037 * 120.00084 * 0.02562 * 3 2 1 5 5 C 1.40055 * 119.83301 * 179.97438 * 4 3 2 6 6 C 1.46835 * 120.08210 * 180.02562 * 5 4 3 7 7 C 1.35295 * 119.99962 * 136.61465 * 6 5 4 8 8 C 1.41766 * 119.99819 * 348.26706 * 7 6 5 9 9 O 1.21774 * 120.00587 * 353.42880 * 8 7 6 10 10 C 1.47822 * 119.99914 * 173.42437 * 8 7 6 11 11 C 1.39691 * 120.11690 * 180.02562 * 10 8 7 12 12 C 1.37818 * 119.90300 * 180.02562 * 11 10 8 13 13 C 1.38660 * 120.13503 * 0.02562 * 12 11 10 14 14 F 1.35097 * 119.88393 * 179.97438 * 13 12 11 15 15 C 1.38759 * 120.23211 * 359.97438 * 13 12 11 16 16 Cl 1.73601 * 119.95431 * 179.97438 * 15 13 12 17 17 C 1.37951 * 120.09458 * 0.25457 * 15 13 12 18 18 C 1.40113 * 119.83329 * 0.27796 * 5 4 3 19 19 C 1.37606 * 119.99481 * 359.39721 * 18 5 4 20 20 C 1.39098 * 120.16346 * 0.62499 * 19 18 5 21 21 O 1.35589 * 119.91518 * 179.69259 * 20 19 18 22 22 C 1.34735 * 116.99945 * 354.36985 * 21 20 19 23 23 H 1.07998 * 119.99812 * 5.05047 * 22 21 20 24 24 C 1.38751 * 120.00140 * 185.05533 * 22 21 20 25 25 N 1.31489 * 119.99842 * 180.02562 * 24 22 21 26 26 Si 1.86802 * 119.99463 * 359.97438 * 24 22 21 27 27 H 1.48500 * 109.47363 * 90.00399 * 26 24 22 28 28 H 1.48507 * 109.46698 * 210.00147 * 26 24 22 29 29 H 1.48502 * 109.47234 * 329.99648 * 26 24 22 30 30 H 1.09001 * 109.46562 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46857 * 299.99670 * 1 2 3 32 32 H 1.08998 * 109.47432 * 59.99906 * 1 2 3 33 33 H 1.07992 * 120.08103 * 359.97438 * 4 3 2 34 34 H 1.08002 * 119.99315 * 316.60536 * 6 5 4 35 35 H 1.08004 * 120.00114 * 168.27819 * 7 6 5 36 36 H 1.07997 * 120.04931 * 359.97438 * 11 10 8 37 37 H 1.08004 * 119.93301 * 179.97438 * 12 11 10 38 38 H 1.08005 * 120.07165 * 179.72258 * 17 15 13 39 39 H 1.08000 * 120.00344 * 179.72460 * 18 5 4 40 40 H 1.08003 * 119.91964 * 180.33951 * 19 18 5 41 41 H 0.97006 * 119.99487 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2943 2.3690 0.0005 5 6 1.9337 3.6151 0.0011 6 6 1.1392 4.8500 0.0022 7 6 1.4897 5.8791 0.8076 8 6 2.4599 5.6858 1.8230 9 8 2.8901 4.5694 2.0498 10 6 2.9496 6.8397 2.6065 11 6 3.9060 6.6522 3.6073 12 6 4.3591 7.7310 4.3355 13 6 3.8672 9.0014 4.0770 14 9 4.3145 10.0552 4.7942 15 6 2.9171 9.1941 3.0842 16 17 2.3057 10.7876 2.7671 17 6 2.4534 8.1203 2.3527 18 6 3.3333 3.6804 -0.0048 19 6 4.0760 2.5220 0.0014 20 6 3.4409 1.2845 0.0004 21 8 4.1777 0.1463 0.0003 22 6 5.5130 0.2821 -0.1167 23 1 5.9572 1.2665 -0.1227 24 6 6.3175 -0.8428 -0.2295 25 7 7.6208 -0.7102 -0.3431 26 14 5.5492 -2.5454 -0.2184 27 1 5.2181 -2.9481 -1.6089 28 1 6.5091 -3.5178 0.3633 29 1 4.3097 -2.5239 0.5992 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 0.2158 2.3140 0.0005 34 1 0.2752 4.9367 -0.6400 35 1 1.0302 6.8477 0.6770 36 1 4.2892 5.6632 3.8106 37 1 5.0983 7.5865 5.1096 38 1 1.7106 8.2700 1.5831 39 1 3.8291 4.6398 -0.0089 40 1 5.1548 2.5738 0.0024 41 1 8.1832 -1.4966 -0.4223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000098008727.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:01 Heat of formation + Delta-G solvation = -73.248616 kcal Electronic energy + Delta-G solvation = -30256.107371 eV Core-core repulsion = 25622.747217 eV Total energy + Delta-G solvation = -4633.360154 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 376.071 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -50.17671 -41.64584 -41.01477 -39.53361 -39.34972 -37.77444 -37.48414 -34.67256 -34.21960 -32.52477 -31.86973 -31.17902 -30.19256 -27.92928 -27.35293 -25.94108 -24.48461 -23.69187 -23.18236 -22.25555 -20.19103 -19.84583 -19.41367 -19.09310 -18.06323 -17.95806 -17.42927 -17.06361 -16.96004 -16.68329 -16.39459 -16.34489 -15.80216 -15.64375 -15.43404 -15.27913 -15.17810 -14.90387 -14.67556 -14.54587 -14.28515 -14.05495 -13.95148 -13.92758 -13.74565 -13.14978 -12.86707 -12.77451 -12.64685 -12.56668 -12.46611 -12.17639 -12.07548 -12.04375 -11.85058 -11.45814 -10.98303 -10.67549 -10.33303 -10.20567 -9.89438 -9.45786 -8.52090 -8.44958 -6.18873 -0.83836 -0.12493 -0.04711 0.57616 0.84260 0.94738 1.28561 1.33537 1.52239 1.88420 2.28190 2.55547 2.63870 2.76711 2.83536 3.02268 3.09090 3.12161 3.46065 3.81178 3.85024 3.96175 4.03775 4.17146 4.26824 4.33002 4.35795 4.47828 4.53442 4.55702 4.60338 4.64843 4.75272 4.77943 4.87699 4.93071 5.04358 5.09988 5.26859 5.43286 5.45248 5.51388 5.59499 5.76889 5.83174 6.05500 6.63532 6.71099 6.82582 7.60506 8.59490 Molecular weight = 376.07amu Principal moments of inertia in cm(-1) A = 0.012731 B = 0.002143 C = 0.001910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.866166 B =13063.123795 C =14654.098869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.345 6.345 3 C 0.039 3.961 4 C -0.130 4.130 5 C -0.123 4.123 6 C 0.031 3.969 7 C -0.260 4.260 8 C 0.408 3.592 9 O -0.471 6.471 10 C -0.162 4.162 11 C -0.043 4.043 12 C -0.148 4.148 13 C 0.124 3.876 14 F -0.128 7.128 15 C -0.093 4.093 16 Cl -0.041 7.041 17 C -0.027 4.027 18 C -0.032 4.032 19 C -0.213 4.213 20 C 0.104 3.896 21 O -0.234 6.234 22 C -0.398 4.398 23 H 0.082 0.918 24 C 0.014 3.986 25 N -0.919 5.919 26 Si 0.967 3.033 27 H -0.265 1.265 28 H -0.264 1.264 29 H -0.269 1.269 30 H 0.110 0.890 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.167 0.833 34 H 0.178 0.822 35 H 0.179 0.821 36 H 0.141 0.859 37 H 0.167 0.833 38 H 0.183 0.817 39 H 0.119 0.881 40 H 0.111 0.889 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.164 21.059 4.535 28.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.260 6.260 3 C -0.006 4.006 4 C -0.149 4.149 5 C -0.124 4.124 6 C 0.013 3.987 7 C -0.278 4.278 8 C 0.292 3.708 9 O -0.351 6.351 10 C -0.163 4.163 11 C -0.061 4.061 12 C -0.167 4.167 13 C 0.103 3.897 14 F -0.106 7.106 15 C -0.120 4.120 16 Cl -0.012 7.012 17 C -0.045 4.045 18 C -0.050 4.050 19 C -0.233 4.233 20 C 0.055 3.945 21 O -0.141 6.141 22 C -0.474 4.474 23 H 0.100 0.900 24 C -0.185 4.185 25 N -0.560 5.560 26 Si 0.789 3.211 27 H -0.190 1.190 28 H -0.188 1.188 29 H -0.193 1.193 30 H 0.128 0.872 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.185 0.815 34 H 0.195 0.805 35 H 0.196 0.804 36 H 0.159 0.841 37 H 0.185 0.815 38 H 0.200 0.800 39 H 0.137 0.863 40 H 0.129 0.871 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.753 20.161 4.660 27.264 hybrid contribution 0.766 -0.182 0.379 0.874 sum -16.986 19.979 5.039 26.704 Atomic orbital electron populations 1.23301 0.76835 1.05079 1.02277 1.86128 1.23185 1.26623 1.90111 1.18199 0.88363 0.86175 1.07885 1.21211 1.00260 0.89464 1.03920 1.18773 0.92438 0.93712 1.07463 1.22879 0.94449 0.88429 0.92941 1.22669 1.03796 1.02142 0.99227 1.19658 0.80656 0.86960 0.83510 1.90911 1.52948 1.26661 1.64590 1.20723 1.00566 0.95046 0.99969 1.21466 0.93050 0.99754 0.91844 1.21289 1.02875 0.89522 1.02991 1.17855 0.95321 0.84736 0.91744 1.91549 1.87612 1.55427 1.76048 1.20992 1.01091 0.89286 1.00673 1.98404 1.86294 1.21642 1.94854 1.21452 0.97535 0.88347 0.97202 1.20767 0.93226 0.96056 0.94972 1.20864 1.00096 0.91813 1.10507 1.19186 0.89350 0.86787 0.99215 1.83519 1.19169 1.28912 1.82514 1.20766 0.78668 0.96312 1.51628 0.90031 1.25216 0.94955 1.02848 0.95491 1.69694 1.04115 1.32764 1.49417 0.85273 0.78513 0.77815 0.79466 1.18966 1.18844 1.19343 0.87199 0.91754 0.91061 0.81530 0.80483 0.80404 0.84089 0.81514 0.79973 0.86338 0.87097 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 9.81 113.37 1.11 1.58 16 2 O -0.35 -13.75 10.28 -79.05 -0.81 -14.57 16 3 C 0.04 1.60 6.70 22.57 0.15 1.75 16 4 C -0.13 -4.02 8.78 22.66 0.20 -3.82 16 5 C -0.12 -3.62 4.49 -20.13 -0.09 -3.71 16 6 C 0.03 0.54 9.80 23.84 0.23 0.77 16 7 C -0.26 -3.98 9.22 22.46 0.21 -3.77 16 8 C 0.41 9.20 5.97 25.68 0.15 9.35 16 9 O -0.47 -15.31 12.05 -4.58 -0.06 -15.37 16 10 C -0.16 -3.02 5.88 -20.05 -0.12 -3.14 16 11 C -0.04 -0.84 9.59 22.52 0.22 -0.63 16 12 C -0.15 -2.47 10.01 22.27 0.22 -2.25 16 13 C 0.12 2.16 7.28 22.50 0.16 2.32 16 14 F -0.13 -2.40 16.83 44.97 0.76 -1.64 16 15 C -0.09 -1.45 6.32 22.33 0.14 -1.31 16 16 Cl -0.04 -0.59 28.60 -2.72 -0.08 -0.67 16 17 C -0.03 -0.37 9.21 22.55 0.21 -0.16 16 18 C -0.03 -1.16 6.63 22.58 0.15 -1.01 16 19 C -0.21 -9.96 9.14 22.33 0.20 -9.75 16 20 C 0.10 5.26 6.67 22.82 0.15 5.42 16 21 O -0.23 -13.66 8.35 -6.03 -0.05 -13.72 16 22 C -0.40 -24.50 9.94 67.94 0.68 -23.82 16 23 H 0.08 5.23 5.41 -2.91 -0.02 5.21 16 24 C 0.01 0.82 5.50 84.87 0.47 1.29 16 25 N -0.92 -56.27 13.96 21.63 0.30 -55.97 16 26 Si 0.97 47.90 28.62 68.60 1.96 49.86 16 27 H -0.26 -12.56 7.11 99.48 0.71 -11.86 16 28 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 29 H -0.27 -13.73 7.11 99.48 0.71 -13.02 16 30 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 31 H 0.06 1.31 7.66 -2.39 -0.02 1.29 16 32 H 0.07 1.36 7.66 -2.39 -0.02 1.34 16 33 H 0.17 3.56 6.28 -2.91 -0.02 3.54 16 34 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 35 H 0.18 1.05 6.26 -2.91 -0.02 1.03 16 36 H 0.14 3.10 7.65 -2.91 -0.02 3.07 16 37 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 38 H 0.18 1.23 6.22 -2.91 -0.02 1.21 16 39 H 0.12 3.89 7.04 -2.91 -0.02 3.87 16 40 H 0.11 5.68 5.62 -2.91 -0.02 5.66 16 41 H 0.29 15.97 8.31 -92.70 -0.77 15.20 16 Total: -1.00 -79.63 373.30 7.59 -72.04 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: 1.12 Total: 10.92 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 4.45 Total: -30.89 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.30 Total: -55.97 kcal Atomic # 8 Polarization: -42.73 SS G_CDS: -0.92 Total: -43.65 kcal Atomic # 9 Polarization: -2.40 SS G_CDS: 0.76 Total: -1.64 kcal Atomic # 14 Polarization: 47.90 SS G_CDS: 1.96 Total: 49.86 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -0.08 Total: -0.67 kcal Total: -79.63 7.59 -72.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098008727.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.206 kcal (2) G-P(sol) polarization free energy of solvation -79.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds