Wall clock time and date at job start Tue Mar 31 2020 06:41:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.35617 * 124.77652 * 2 1 4 4 C 1.36665 * 109.69001 * 179.91303 * 3 2 1 5 5 C 1.46383 * 126.78331 * 179.48988 * 4 3 2 6 6 C 1.35451 * 120.00065 * 42.47640 * 5 4 3 7 7 C 1.41498 * 119.99970 * 9.13609 * 6 5 4 8 8 O 1.21787 * 119.99929 * 6.57567 * 7 6 5 9 9 N 1.34780 * 120.00043 * 186.56969 * 7 6 5 10 10 C 1.46497 * 119.99976 * 180.02562 * 9 7 6 11 11 C 1.50694 * 109.47210 * 180.02562 * 10 9 7 12 12 C 1.38322 * 119.96699 * 269.72511 * 11 10 9 13 13 C 1.38277 * 120.14053 * 179.76680 * 12 11 10 14 14 C 1.38124 * 120.06820 * 0.50691 * 13 12 11 15 15 C 1.38859 * 119.93153 * 359.75145 * 14 13 12 16 16 O 1.35744 * 120.07234 * 179.97438 * 15 14 13 17 17 C 1.34828 * 116.99922 * 352.98798 * 16 15 14 18 18 H 1.08004 * 120.00362 * 5.23842 * 17 16 15 19 19 C 1.38657 * 119.99975 * 185.23249 * 17 16 15 20 20 N 1.31555 * 119.99961 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99970 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47283 * 90.00199 * 21 19 17 23 23 H 1.48497 * 109.47225 * 210.00426 * 21 19 17 24 24 H 1.48500 * 109.47202 * 330.00072 * 21 19 17 25 25 C 1.38080 * 119.96847 * 90.00066 * 11 10 9 26 26 C 1.47517 * 106.43109 * 359.51035 * 4 3 2 27 27 C 1.39248 * 133.97028 * 180.02562 * 26 4 3 28 28 C 1.37770 * 119.68037 * 179.74284 * 27 26 4 29 29 C 1.38746 * 120.29286 * 0.23083 * 28 27 26 30 30 C 1.37774 * 120.63088 * 0.02562 * 29 28 27 31 31 C 1.37988 * 124.78001 * 179.23264 * 2 1 3 32 32 H 1.09006 * 109.47399 * 270.76234 * 1 2 3 33 33 H 1.09002 * 109.47294 * 30.76022 * 1 2 3 34 34 H 1.09000 * 109.47630 * 150.76347 * 1 2 3 35 35 H 1.07995 * 125.15262 * 359.42441 * 3 2 1 36 36 H 1.07996 * 120.00193 * 222.47323 * 5 4 3 37 37 H 1.08003 * 120.00072 * 189.14248 * 6 5 4 38 38 H 0.97002 * 119.99822 * 0.02562 * 9 7 6 39 39 H 1.08998 * 109.47639 * 300.00467 * 10 9 7 40 40 H 1.09000 * 109.47102 * 60.00092 * 10 9 7 41 41 H 1.08005 * 119.93077 * 359.97438 * 12 11 10 42 42 H 1.08006 * 119.97216 * 180.25698 * 13 12 11 43 43 H 1.08004 * 120.03763 * 179.72403 * 14 13 12 44 44 H 0.96999 * 119.99817 * 180.02562 * 20 19 17 45 45 H 1.08004 * 120.03284 * 359.95424 * 25 11 10 46 46 H 1.08001 * 120.15925 * 0.02562 * 27 26 4 47 47 H 1.07998 * 119.85818 * 180.25523 * 28 27 26 48 48 H 1.08004 * 119.68580 * 180.02562 * 29 28 27 49 49 H 1.07996 * 120.03357 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2385 1.1139 0.0000 4 6 3.5580 0.7582 0.0020 5 6 4.7095 1.6620 -0.0078 6 6 4.7089 2.7682 0.7739 7 6 3.6906 2.9519 1.7390 8 8 2.8849 2.0636 1.9507 9 7 3.6125 4.1099 2.4242 10 6 2.5586 4.2999 3.4238 11 6 2.6918 5.6685 4.0404 12 6 3.4685 5.8441 5.1714 13 6 3.5971 7.0992 5.7373 14 6 2.9415 8.1799 5.1805 15 6 2.1567 8.0059 4.0482 16 8 1.5106 9.0659 3.4989 17 6 1.5529 10.2286 4.1803 18 1 2.1536 10.3092 5.0743 19 6 0.8255 11.3211 3.7331 20 7 0.0936 11.2229 2.6444 21 14 0.8835 12.9318 4.6775 22 1 1.9923 13.7712 4.1568 23 1 -0.4041 13.6517 4.5079 24 1 1.1086 12.6528 6.1186 25 6 2.0338 6.7449 3.4791 26 6 3.5927 -0.7165 0.0154 27 6 4.6172 -1.6594 0.0234 28 6 4.3086 -3.0020 0.0412 29 6 2.9843 -3.4157 0.0462 30 6 1.9607 -2.4935 0.0330 31 6 2.2521 -1.1333 0.0152 32 1 -0.3634 0.0137 1.0276 33 1 -0.3634 0.8831 -0.5256 34 1 -0.3634 -0.8967 -0.5019 35 1 1.8679 2.1283 -0.0089 36 1 5.5596 1.4468 -0.6383 37 1 5.4856 3.5101 0.6604 38 1 4.2541 4.8176 2.2553 39 1 1.5833 4.2108 2.9452 40 1 2.6529 3.5406 4.2001 41 1 3.9783 4.9998 5.6114 42 1 4.2077 7.2340 6.6179 43 1 3.0387 9.1592 5.6255 44 1 -0.4151 11.9873 2.3314 45 1 1.4245 6.6065 2.5982 46 1 5.6489 -1.3398 0.0204 47 1 5.1010 -3.7358 0.0516 48 1 2.7535 -4.4707 0.0606 49 1 0.9333 -2.8262 0.0367 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000098056114.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:57 Heat of formation + Delta-G solvation = 57.700300 kcal Electronic energy + Delta-G solvation = -31881.932077 eV Core-core repulsion = 27548.269295 eV Total energy + Delta-G solvation = -4333.662782 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.49110 -39.78242 -39.03547 -37.18447 -36.83114 -34.79700 -33.97484 -32.35809 -31.91609 -30.72918 -30.41401 -29.19066 -28.76280 -26.90567 -25.80634 -25.14516 -23.27942 -22.63771 -21.71917 -21.56600 -20.81217 -20.58560 -19.05960 -17.82656 -17.49611 -17.02117 -16.60129 -16.40550 -15.62168 -15.54429 -15.40281 -15.27351 -14.95625 -14.43708 -14.39513 -14.14949 -14.03239 -13.99638 -13.69918 -13.47803 -13.38403 -13.09653 -12.88562 -12.71665 -12.54071 -12.40841 -12.26260 -12.12662 -11.80699 -11.68858 -11.45330 -11.36994 -11.01700 -10.94184 -10.83266 -10.71813 -10.49315 -10.23040 -9.63119 -9.42888 -9.20666 -8.91057 -8.83710 -8.26547 -8.18684 -7.35318 -7.28387 -6.50975 -4.10549 0.76936 1.24786 1.55133 1.91082 2.25559 2.67225 2.87990 3.08271 3.09872 3.14551 3.50340 3.63755 3.83134 3.91032 4.50555 4.50662 4.54098 4.71075 4.83059 4.90823 4.93326 4.97419 5.03541 5.06939 5.08858 5.21084 5.27147 5.35276 5.40659 5.52515 5.54088 5.61512 5.72033 5.74699 5.84024 5.87085 5.93203 6.06329 6.21029 6.22026 6.25118 6.40562 6.49087 6.54228 6.59462 6.67713 6.71719 6.80176 6.98174 7.10395 7.17189 7.17678 7.25968 7.33800 7.67975 7.74745 7.93210 8.43644 8.94513 9.63076 10.66786 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.018034 B = 0.001541 C = 0.001487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.291225 B =18161.064996 C =18821.665913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.477 5.477 3 C 0.167 3.833 4 C -0.196 4.196 5 C 0.044 3.956 6 C -0.250 4.250 7 C 0.544 3.456 8 O -0.547 6.547 9 N -0.719 5.719 10 C 0.170 3.830 11 C -0.072 4.072 12 C -0.195 4.195 13 C -0.076 4.076 14 C -0.226 4.226 15 C 0.150 3.850 16 O -0.177 6.177 17 C -0.393 4.393 18 H 0.092 0.908 19 C 0.040 3.960 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.273 1.273 23 H -0.277 1.277 24 H -0.267 1.267 25 C -0.171 4.171 26 C -0.071 4.071 27 C -0.082 4.082 28 C -0.143 4.143 29 C -0.114 4.114 30 C -0.122 4.122 31 C 0.082 3.918 32 H 0.072 0.928 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.166 0.834 36 H 0.128 0.872 37 H 0.128 0.872 38 H 0.402 0.598 39 H 0.070 0.930 40 H 0.070 0.930 41 H 0.107 0.893 42 H 0.109 0.891 43 H 0.127 0.873 44 H 0.270 0.730 45 H 0.117 0.883 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.605 -23.217 -6.267 24.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.158 5.158 3 C 0.037 3.963 4 C -0.202 4.202 5 C 0.023 3.977 6 C -0.272 4.272 7 C 0.335 3.665 8 O -0.428 6.428 9 N -0.369 5.369 10 C 0.047 3.953 11 C -0.073 4.073 12 C -0.214 4.214 13 C -0.094 4.094 14 C -0.245 4.245 15 C 0.096 3.904 16 O -0.080 6.080 17 C -0.469 4.469 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.198 1.198 23 H -0.202 1.202 24 H -0.192 1.192 25 C -0.191 4.191 26 C -0.075 4.075 27 C -0.101 4.101 28 C -0.163 4.163 29 C -0.133 4.133 30 C -0.143 4.143 31 C -0.021 4.021 32 H 0.091 0.909 33 H 0.103 0.897 34 H 0.098 0.902 35 H 0.183 0.817 36 H 0.146 0.854 37 H 0.146 0.854 38 H 0.236 0.764 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.145 0.855 44 H 0.080 0.920 45 H 0.135 0.865 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.340 -23.642 -6.452 25.081 hybrid contribution 0.313 1.458 0.700 1.647 sum 5.653 -22.184 -5.752 23.604 Atomic orbital electron populations 1.21987 0.77076 1.04060 1.03413 1.43603 1.06131 1.04505 1.61578 1.21886 0.89622 0.90408 0.94371 1.18707 0.92165 0.90628 1.18727 1.21579 0.93998 0.89950 0.92191 1.21927 1.02886 1.01620 1.00720 1.17215 0.85286 0.81854 0.82106 1.90879 1.42736 1.41012 1.68173 1.46228 1.33040 1.17272 1.40397 1.20070 0.90986 0.93684 0.90570 1.19295 0.98510 0.93277 0.96212 1.20487 1.04970 0.96987 0.98999 1.20751 0.97822 0.92515 0.98357 1.21240 1.03490 0.99872 0.99924 1.19325 0.91273 0.88453 0.91302 1.83975 1.63325 1.16325 1.44418 1.21323 1.29882 0.86184 1.09547 0.89058 1.25292 0.95338 0.99159 0.96664 1.70034 1.26979 1.31433 1.21163 0.85709 0.78172 0.80210 0.79336 1.19846 1.20223 1.19179 1.20074 1.05796 0.90106 1.03145 1.18980 0.92106 0.92350 1.04081 1.20411 0.97865 0.91921 0.99862 1.20847 0.96276 0.95311 1.03817 1.20698 0.92339 0.98587 1.01670 1.19990 0.99375 0.89241 1.05665 1.18194 0.90091 0.88077 1.05778 0.90946 0.89727 0.90174 0.81721 0.85445 0.85405 0.76395 0.91209 0.91193 0.87536 0.87293 0.85488 0.91968 0.86488 0.86272 0.86230 0.86080 0.86691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.58 10.98 59.85 0.66 1.24 16 2 N -0.48 -5.43 3.15 -121.47 -0.38 -5.81 16 3 C 0.17 2.06 8.09 -16.45 -0.13 1.93 16 4 C -0.20 -2.45 4.92 -103.41 -0.51 -2.96 16 5 C 0.04 0.45 10.18 -37.30 -0.38 0.07 16 6 C -0.25 -2.66 9.82 -39.34 -0.39 -3.04 16 7 C 0.54 7.24 7.06 -15.02 -0.11 7.13 16 8 O -0.55 -8.67 11.70 5.11 0.06 -8.61 16 9 N -0.72 -9.31 5.54 -64.45 -0.36 -9.67 16 10 C 0.17 2.47 5.80 -5.20 -0.03 2.44 16 11 C -0.07 -1.21 5.25 -104.65 -0.55 -1.76 16 12 C -0.19 -3.20 9.70 -39.54 -0.38 -3.58 16 13 C -0.08 -1.33 10.04 -39.61 -0.40 -1.73 16 14 C -0.23 -4.70 9.16 -39.39 -0.36 -5.06 16 15 C 0.15 3.48 6.64 -39.11 -0.26 3.22 16 16 O -0.18 -4.90 9.76 0.07 0.00 -4.90 16 17 C -0.39 -10.71 9.49 30.89 0.29 -10.42 16 18 H 0.09 2.29 5.22 -52.48 -0.27 2.02 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.98 16 20 N -0.86 -24.75 13.67 55.48 0.76 -23.99 16 21 Si 0.94 20.07 29.55 -169.99 -5.02 15.04 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 25 C -0.17 -3.42 9.64 -39.39 -0.38 -3.80 16 26 C -0.07 -0.90 6.36 -104.93 -0.67 -1.56 16 27 C -0.08 -0.88 10.09 -39.38 -0.40 -1.28 16 28 C -0.14 -1.35 10.03 -39.56 -0.40 -1.75 16 29 C -0.11 -1.05 10.01 -39.56 -0.40 -1.44 16 30 C -0.12 -1.25 9.91 -39.42 -0.39 -1.64 16 31 C 0.08 1.00 6.78 -83.96 -0.57 0.43 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.52 8.13 -51.93 -0.42 0.10 16 34 H 0.08 0.46 8.02 -51.93 -0.42 0.05 16 35 H 0.17 1.94 7.34 -52.49 -0.39 1.55 16 36 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 37 H 0.13 1.04 8.06 -52.48 -0.42 0.62 16 38 H 0.40 4.71 8.42 -40.82 -0.34 4.37 16 39 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 40 H 0.07 1.02 8.08 -51.93 -0.42 0.60 16 41 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 42 H 0.11 1.60 8.06 -52.48 -0.42 1.18 16 43 H 0.13 2.65 5.66 -52.48 -0.30 2.36 16 44 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.12 2.30 8.06 -52.48 -0.42 1.88 16 46 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 47 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 48 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 49 H 0.12 0.92 8.01 -52.49 -0.42 0.50 16 LS Contribution 418.00 15.07 6.30 6.30 Total: -1.00 -33.34 418.00 -10.82 -44.16 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: -6.34 Total: 10.07 kcal Atomic # 6 Polarization: -16.74 SS G_CDS: -5.84 Total: -22.58 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.02 Total: -39.48 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.06 Total: -13.51 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -33.34 -10.82 -44.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000098056114.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.860 kcal (2) G-P(sol) polarization free energy of solvation -33.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds