Wall clock time and date at job start Tue Mar 31 2020 05:30:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86807 * 119.99820 * 2 1 4 4 H 1.48499 * 109.46861 * 270.00020 * 3 2 1 5 5 H 1.48498 * 109.46977 * 29.99989 * 3 2 1 6 6 H 1.48493 * 109.47074 * 149.99901 * 3 2 1 7 7 C 1.37875 * 120.00261 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00213 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00017 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46864 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46835 * 180.02562 * 10 9 7 12 12 P 1.82290 * 109.47020 * 174.51241 * 11 10 9 13 13 C 1.81404 * 109.46969 * 197.38237 * 12 11 10 14 14 C 1.38241 * 119.99992 * 150.00172 * 13 12 11 15 15 C 1.38237 * 119.99978 * 180.02562 * 14 13 12 16 16 C 1.38237 * 119.99694 * 359.97438 * 15 14 13 17 17 C 1.38235 * 120.00294 * 0.26149 * 16 15 14 18 18 C 1.38229 * 119.99949 * 330.01892 * 13 12 11 19 19 C 1.81403 * 109.47454 * 77.38344 * 12 11 10 20 20 C 1.38237 * 119.99232 * 329.38255 * 19 12 11 21 21 C 1.38239 * 119.99288 * 179.76363 * 20 19 12 22 22 C 1.38236 * 120.00293 * 0.48633 * 21 20 19 23 23 C 1.38236 * 119.99798 * 359.78888 * 22 21 20 24 24 C 1.38232 * 120.00397 * 149.65269 * 19 12 11 25 25 C 1.81398 * 109.47214 * 317.38099 * 12 11 10 26 26 C 1.38237 * 119.99847 * 321.62014 * 25 12 11 27 27 C 1.38241 * 119.99835 * 179.76346 * 26 25 12 28 28 C 1.38239 * 119.99742 * 0.49153 * 27 26 25 29 29 C 1.38239 * 120.00260 * 359.78504 * 28 27 26 30 30 C 1.38237 * 119.99872 * 141.89486 * 25 12 11 31 31 H 0.96991 * 120.00388 * 359.97438 * 1 2 3 32 32 H 1.09001 * 109.46618 * 60.00111 * 9 7 2 33 33 H 1.08994 * 109.47027 * 300.00461 * 9 7 2 34 34 H 1.08992 * 109.47091 * 60.00078 * 10 9 7 35 35 H 1.09003 * 109.47178 * 300.00074 * 10 9 7 36 36 H 1.09005 * 109.46767 * 54.51125 * 11 10 9 37 37 H 1.09004 * 109.46960 * 294.51643 * 11 10 9 38 38 H 1.07998 * 119.99745 * 359.97438 * 14 13 12 39 39 H 1.07999 * 119.99539 * 179.97438 * 15 14 13 40 40 H 1.08005 * 119.99260 * 179.97438 * 16 15 14 41 41 H 1.07995 * 119.99771 * 179.72398 * 17 16 15 42 42 H 1.07995 * 120.00192 * 0.02562 * 18 13 12 43 43 H 1.07998 * 120.00623 * 359.97438 * 20 19 12 44 44 H 1.08003 * 119.99967 * 180.24746 * 21 20 19 45 45 H 1.07995 * 119.99952 * 179.76397 * 22 21 20 46 46 H 1.08000 * 120.00067 * 179.97438 * 23 22 21 47 47 H 1.08003 * 119.99528 * 0.02562 * 24 19 12 48 48 H 1.07995 * 120.00194 * 359.97438 * 26 25 12 49 49 H 1.07995 * 120.00170 * 180.25257 * 27 26 25 50 50 H 1.08000 * 119.99902 * 179.76331 * 28 27 26 51 51 H 1.07995 * 119.99958 * 179.97438 * 29 28 27 52 52 H 1.07995 * 120.00407 * 0.02562 * 30 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2455 -3.6620 -0.0018 11 6 1.4805 -4.9871 -0.0025 12 15 2.6583 -6.3685 -0.1684 13 6 1.7681 -7.8639 -0.6802 14 6 2.4074 -8.8209 -1.4461 15 6 1.7288 -9.9602 -1.8366 16 6 0.4111 -10.1428 -1.4606 17 6 -0.2296 -9.1836 -0.6989 18 6 0.4503 -8.0464 -0.3046 19 6 3.4714 -6.6648 1.4259 20 6 3.6787 -5.6153 2.3015 21 6 4.2940 -5.8419 3.5185 22 6 4.7109 -7.1161 3.8557 23 6 4.5086 -8.1644 2.9776 24 6 3.8887 -7.9388 1.7629 25 6 3.9074 -5.9517 -1.4159 26 6 3.5413 -5.2632 -2.5574 27 6 4.4941 -4.9412 -3.5059 28 6 5.8111 -5.3167 -3.3176 29 6 6.1762 -6.0102 -2.1788 30 6 5.2244 -6.3275 -1.2279 31 1 -0.4850 0.8399 0.0004 32 1 0.6242 -2.5567 -0.8903 33 1 0.6248 -2.5571 0.8896 34 1 2.8728 -3.6046 0.8876 35 1 2.8715 -3.6038 -0.8923 36 1 0.7818 -5.0028 -0.8390 37 1 0.9300 -5.0892 0.9327 38 1 3.4367 -8.6779 -1.7401 39 1 2.2282 -10.7075 -2.4353 40 1 -0.1191 -11.0328 -1.7661 41 1 -1.2604 -9.3243 -0.4090 42 1 -0.0493 -7.2985 0.2932 43 1 3.3571 -4.6191 2.0362 44 1 4.4524 -5.0228 4.2043 45 1 5.1949 -7.2924 4.8048 46 1 4.8347 -9.1598 3.2408 47 1 3.7309 -8.7578 1.0767 48 1 2.5116 -4.9739 -2.7066 49 1 4.2089 -4.3998 -4.3957 50 1 6.5548 -5.0685 -4.0604 51 1 7.2050 -6.3039 -2.0320 52 1 5.5095 -6.8696 -0.3385 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). P: (AM1): M.J.S.DEWAR, C. JIE, J. MOL. STRUCT. (THEOCHEM) 187,1 (1989) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101078062.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:17 Heat of formation + Delta-G solvation = 178.401685 kcal Electronic energy + Delta-G solvation = -31046.831478 eV Core-core repulsion = 27331.593632 eV Total energy + Delta-G solvation = -3715.237846 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 375.157 amu Computer time = 4.42 seconds Orbital eigenvalues (eV) -40.89003 -40.54250 -40.42703 -36.12688 -33.60339 -33.15190 -32.80117 -32.69231 -32.45265 -32.26506 -32.22930 -28.86234 -25.23527 -24.78687 -24.43758 -24.41020 -24.14390 -23.94920 -23.89212 -21.90717 -19.96109 -18.98821 -18.90147 -17.87083 -17.41460 -17.09313 -17.02661 -16.83524 -16.67267 -16.66025 -16.34763 -15.94546 -15.52611 -15.29904 -15.28433 -15.22980 -15.09011 -14.88716 -14.77103 -14.55246 -14.52176 -14.29828 -13.97385 -13.43767 -13.28070 -13.02774 -12.91734 -12.85557 -12.78241 -12.66766 -12.58115 -12.14187 -11.82683 -11.45970 -11.21984 -11.14075 -11.03660 -10.89986 -10.77668 -10.65968 -10.63455 -10.53397 -10.22670 -9.36867 -7.01902 -5.10051 -1.33239 -0.96017 -0.85624 -0.76382 -0.43327 -0.31488 -0.22859 1.58642 1.61560 1.66518 1.98878 2.06656 2.14149 2.50697 2.59220 2.62805 3.00355 3.03927 3.09845 3.14801 3.18005 3.23574 3.36532 3.39476 3.41145 3.50167 3.56835 3.58003 3.59717 3.64005 3.69719 3.74762 3.76995 3.83444 3.97027 4.08011 4.11281 4.16208 4.19078 4.26819 4.30875 4.31368 4.36057 4.43158 4.50518 4.56554 4.64188 4.73173 4.73793 4.76208 4.84204 4.93018 4.94390 5.10359 5.22453 5.29847 5.50418 6.41989 6.45410 6.90414 7.24810 7.95874 8.60128 10.08404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.120 4.120 11 C -0.755 4.755 12 P 2.701 2.299 13 C -0.745 4.745 14 C -0.049 4.049 15 C -0.127 4.127 16 C -0.060 4.060 17 C -0.124 4.124 18 C -0.047 4.047 19 C -0.746 4.746 20 C -0.047 4.047 21 C -0.122 4.122 22 C -0.059 4.059 23 C -0.129 4.129 24 C -0.052 4.052 25 C -0.743 4.743 26 C -0.037 4.037 27 C -0.121 4.121 28 C -0.058 4.058 29 C -0.128 4.128 30 C -0.049 4.049 31 H 0.268 0.732 32 H 0.022 0.978 33 H 0.023 0.977 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.152 0.848 44 H 0.143 0.857 45 H 0.138 0.862 46 H 0.138 0.862 47 H 0.135 0.865 48 H 0.141 0.859 49 H 0.142 0.858 50 H 0.138 0.862 51 H 0.138 0.862 52 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.247 -27.589 -1.032 28.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.157 4.157 11 C -0.776 4.776 12 P 2.644 2.356 13 C -0.731 4.731 14 C -0.066 4.066 15 C -0.144 4.144 16 C -0.077 4.077 17 C -0.141 4.141 18 C -0.065 4.065 19 C -0.732 4.732 20 C -0.064 4.064 21 C -0.140 4.140 22 C -0.077 4.077 23 C -0.147 4.147 24 C -0.069 4.069 25 C -0.729 4.729 26 C -0.055 4.055 27 C -0.139 4.139 28 C -0.076 4.076 29 C -0.146 4.146 30 C -0.067 4.067 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.041 0.959 34 H 0.087 0.913 35 H 0.091 0.909 36 H 0.159 0.841 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.157 0.843 40 H 0.156 0.844 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.169 0.831 44 H 0.161 0.839 45 H 0.156 0.844 46 H 0.156 0.844 47 H 0.153 0.847 48 H 0.159 0.841 49 H 0.160 0.840 50 H 0.155 0.845 51 H 0.156 0.844 52 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 8.089 -27.465 -1.030 28.650 hybrid contribution 0.363 0.936 0.025 1.004 sum 8.452 -26.529 -1.005 27.861 Atomic orbital electron populations 1.69887 1.06187 1.27688 1.48688 1.24987 0.94878 0.99607 0.94321 0.86604 0.79895 0.83066 0.78634 1.20262 1.20705 1.19690 1.21051 0.92998 0.90547 1.53598 0.92405 1.19081 0.93303 0.90417 0.98184 1.21907 0.99616 0.91951 1.02195 1.31469 1.16832 1.15933 1.13369 0.93322 0.48045 0.47780 0.46470 1.31201 1.06820 1.19350 1.15762 1.20996 0.99714 0.92684 0.93250 1.21435 0.95120 0.97887 0.99985 1.21718 0.94531 0.98488 0.93013 1.21471 1.01156 0.93722 0.97797 1.21061 0.91748 0.98002 0.95690 1.31103 1.20963 1.00777 1.20350 1.21445 0.93509 0.98259 0.93226 1.21523 0.97611 0.97999 0.96869 1.21720 0.94063 0.92681 0.99231 1.21391 0.99130 1.00192 0.93979 1.20939 0.94319 0.94159 0.97499 1.31008 1.10696 1.16798 1.14406 1.21027 1.00928 0.92260 0.91278 1.21462 0.93132 0.99292 1.00007 1.21698 0.96623 0.92618 0.96632 1.21383 1.00246 0.98809 0.94153 1.20941 0.91084 0.95951 0.98730 0.92242 0.95954 0.95913 0.91325 0.90852 0.84081 0.84159 0.84395 0.84252 0.84352 0.84018 0.84052 0.83099 0.83895 0.84421 0.84410 0.84705 0.84081 0.84003 0.84459 0.84442 0.84611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -16.32 13.29 55.43 0.74 -15.59 16 2 C 0.07 1.10 5.46 -17.82 -0.10 1.00 16 3 Si 0.89 12.54 29.54 -169.99 -5.02 7.52 16 4 H -0.28 -3.92 7.11 56.52 0.40 -3.52 16 5 H -0.28 -4.16 7.11 56.52 0.40 -3.76 16 6 H -0.27 -3.66 7.11 56.52 0.40 -3.26 16 7 C -0.54 -7.72 9.11 -34.44 -0.31 -8.04 16 8 H 0.06 0.76 7.74 -52.49 -0.41 0.35 16 9 C 0.03 0.25 4.97 -27.88 -0.14 0.11 16 10 C -0.12 -0.06 4.90 -26.73 -0.13 -0.19 16 11 C -0.75 4.17 5.02 37.16 0.19 4.35 16 12 P 2.70 -24.64 3.84 -42.89 -0.16 -24.80 16 13 C -0.75 6.72 5.52 -39.58 -0.22 6.50 16 14 C -0.05 0.43 9.37 -39.58 -0.37 0.06 16 15 C -0.13 0.97 10.05 -39.58 -0.40 0.58 16 16 C -0.06 0.43 10.05 -39.58 -0.40 0.03 16 17 C -0.12 0.88 10.05 -39.58 -0.40 0.48 16 18 C -0.05 0.38 9.58 -39.58 -0.38 0.00 16 19 C -0.75 5.96 5.25 -39.58 -0.21 5.75 16 20 C -0.05 0.28 9.58 -39.58 -0.38 -0.10 16 21 C -0.12 0.64 10.05 -39.58 -0.40 0.24 16 22 C -0.06 0.35 10.05 -39.58 -0.40 -0.04 16 23 C -0.13 0.90 10.05 -39.58 -0.40 0.50 16 24 C -0.05 0.43 9.44 -39.59 -0.37 0.05 16 25 C -0.74 5.50 4.86 -39.58 -0.19 5.31 16 26 C -0.04 0.21 8.00 -39.58 -0.32 -0.11 16 27 C -0.12 0.56 10.05 -39.58 -0.40 0.16 16 28 C -0.06 0.29 10.05 -39.58 -0.40 -0.10 16 29 C -0.13 0.76 10.05 -39.58 -0.40 0.37 16 30 C -0.05 0.36 9.57 -39.58 -0.38 -0.02 16 31 H 0.27 4.74 8.31 -40.82 -0.34 4.40 16 32 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 -0.08 5.28 -51.93 -0.27 -0.35 16 35 H 0.07 -0.05 5.83 -51.93 -0.30 -0.35 16 36 H 0.14 -0.97 8.14 -51.93 -0.42 -1.39 16 37 H 0.14 -1.01 8.14 -51.93 -0.42 -1.43 16 38 H 0.14 -1.56 7.66 -52.49 -0.40 -1.96 16 39 H 0.14 -1.27 8.06 -52.49 -0.42 -1.69 16 40 H 0.14 -1.18 8.06 -52.48 -0.42 -1.60 16 41 H 0.14 -1.17 8.06 -52.49 -0.42 -1.60 16 42 H 0.14 -1.47 7.67 -52.49 -0.40 -1.87 16 43 H 0.15 -0.92 4.86 -52.49 -0.26 -1.17 16 44 H 0.14 -0.84 8.06 -52.48 -0.42 -1.27 16 45 H 0.14 -1.01 8.06 -52.49 -0.42 -1.43 16 46 H 0.14 -1.17 8.06 -52.49 -0.42 -1.60 16 47 H 0.14 -1.50 7.45 -52.48 -0.39 -1.89 16 48 H 0.14 -1.04 8.00 -52.49 -0.42 -1.46 16 49 H 0.14 -0.77 8.06 -52.49 -0.42 -1.20 16 50 H 0.14 -0.88 8.06 -52.49 -0.42 -1.30 16 51 H 0.14 -1.03 8.06 -52.49 -0.42 -1.45 16 52 H 0.14 -1.36 7.26 -52.49 -0.38 -1.74 16 LS Contribution 434.20 15.07 6.54 6.54 Total: 0.00 -29.67 434.20 -12.66 -42.34 By element: Atomic # 1 Polarization: -25.04 SS G_CDS: -7.87 Total: -32.90 kcal Atomic # 6 Polarization: 23.79 SS G_CDS: -6.89 Total: 16.90 kcal Atomic # 7 Polarization: -16.32 SS G_CDS: 0.74 Total: -15.59 kcal Atomic # 14 Polarization: 12.54 SS G_CDS: -5.02 Total: 7.52 kcal Atomic # 15 Polarization: -24.64 SS G_CDS: -0.16 Total: -24.80 kcal Total LS contribution 6.54 Total: 6.54 kcal Total: -29.67 -12.66 -42.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101078062.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 220.739 kcal (2) G-P(sol) polarization free energy of solvation -29.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 191.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 178.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.42 seconds