Wall clock time and date at job start Tue Mar 31 2020 06:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.62693 * 2 1 4 4 C 1.53238 * 109.62406 * 239.62120 * 2 1 3 5 5 C 1.52957 * 109.40356 * 294.71876 * 4 2 1 6 6 C 1.52963 * 109.81901 * 296.40236 * 5 4 2 7 7 C 1.53229 * 109.40276 * 63.60131 * 6 5 4 8 8 H 1.09001 * 109.62721 * 65.27448 * 7 6 5 9 9 C 1.52995 * 109.62483 * 185.65963 * 7 6 5 10 10 C 1.50700 * 109.47486 * 184.99812 * 9 7 6 11 11 H 1.08003 * 119.99367 * 359.97438 * 10 9 7 12 12 C 1.37870 * 120.00305 * 179.97438 * 10 9 7 13 13 N 1.31513 * 120.00229 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 120.00160 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46997 * 60.00299 * 14 12 10 16 16 H 1.48494 * 109.47478 * 180.02562 * 14 12 10 17 17 H 1.48503 * 109.47137 * 300.00853 * 14 12 10 18 18 C 1.51270 * 109.78533 * 120.48040 * 2 1 3 19 19 N 1.28021 * 120.85236 * 248.47782 * 18 2 1 20 20 N 1.40098 * 119.99895 * 355.24700 * 19 18 2 21 21 C 1.39602 * 120.00329 * 185.09594 * 20 19 18 22 22 C 1.38993 * 120.07502 * 4.43151 * 21 20 19 23 23 C 1.38063 * 119.91453 * 179.97438 * 22 21 20 24 24 C 1.38323 * 120.08510 * 0.02562 * 23 22 21 25 25 N 1.48021 * 119.91899 * 180.02562 * 24 23 22 26 26 O 1.21799 * 120.00204 * 359.97438 * 25 24 23 27 27 O 1.21799 * 119.99630 * 179.97438 * 25 24 23 28 28 C 1.38280 * 120.15457 * 359.97438 * 24 23 22 29 29 C 1.38102 * 120.08021 * 359.74614 * 28 24 23 30 30 N 1.48032 * 120.03545 * 180.25336 * 29 28 24 31 31 O 1.21810 * 119.99547 * 142.25076 * 30 29 28 32 32 O 1.21789 * 120.00338 * 322.24687 * 30 29 28 33 33 H 1.09001 * 109.47152 * 180.38077 * 1 2 3 34 34 H 1.08995 * 109.46474 * 300.37551 * 1 2 3 35 35 H 1.08996 * 109.46744 * 60.37721 * 1 2 3 36 36 H 1.09000 * 109.47844 * 174.74149 * 4 2 1 37 37 H 1.08994 * 109.47986 * 54.70185 * 4 2 1 38 38 H 1.09001 * 109.41087 * 176.29694 * 5 4 2 39 39 H 1.09007 * 109.41270 * 56.50836 * 5 4 2 40 40 H 1.08995 * 109.48005 * 303.62017 * 6 5 4 41 41 H 1.09001 * 109.48895 * 183.57976 * 6 5 4 42 42 H 1.09004 * 109.47554 * 64.99331 * 9 7 6 43 43 H 1.09005 * 109.47302 * 304.99778 * 9 7 6 44 44 H 0.97002 * 120.00403 * 179.97438 * 13 12 10 45 45 H 0.97000 * 120.00075 * 5.09479 * 20 19 18 46 46 H 1.07997 * 120.03885 * 0.02562 * 22 21 20 47 47 H 1.08006 * 119.95630 * 180.02562 * 23 22 21 48 48 H 1.08000 * 119.95521 * 180.02562 * 28 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8962 1.0267 0.0000 4 6 2.0447 -0.7299 -1.2452 5 6 1.6471 -2.2050 -1.1702 6 6 2.3287 -2.8655 0.0294 7 6 1.8247 -2.2160 1.3225 8 1 0.7627 -2.4269 1.4484 9 6 2.6042 -2.7732 2.5152 10 6 2.0250 -2.2257 3.7941 11 1 1.1850 -1.5476 3.7596 12 6 2.5672 -2.5903 5.0081 13 7 3.5904 -3.4155 5.0501 14 14 1.8497 -1.9109 6.5934 15 1 0.4238 -2.3111 6.7028 16 1 2.6062 -2.4518 7.7511 17 1 1.9487 -0.4292 6.5866 18 6 2.0421 -0.7220 1.2267 19 7 2.6437 -0.0850 2.1601 20 7 2.9236 1.2794 2.0093 21 6 3.6723 1.9497 2.9783 22 6 4.2186 1.2469 4.0457 23 6 4.9590 1.9131 5.0019 24 6 5.1568 3.2782 4.8989 25 7 5.9516 3.9887 5.9258 26 8 6.4301 3.3713 6.8603 27 8 6.1271 5.1906 5.8362 28 6 4.6147 3.9806 3.8382 29 6 3.8779 3.3199 2.8749 30 7 3.3027 4.0719 1.7369 31 8 3.2781 3.5715 0.6266 32 8 2.8540 5.1907 1.9107 33 1 -0.3633 -1.0277 0.0068 34 1 -0.3632 0.5196 0.8866 35 1 -0.3633 0.5080 -0.8933 36 1 3.1306 -0.6480 -1.2917 37 1 1.6075 -0.2804 -2.1367 38 1 1.9553 -2.7103 -2.0855 39 1 0.5654 -2.2836 -1.0608 40 1 3.4078 -2.7330 -0.0473 41 1 2.0928 -3.9296 0.0413 42 1 3.6507 -2.4788 2.4349 43 1 2.5323 -3.8609 2.5202 44 1 3.9721 -3.6718 5.9043 45 1 2.5971 1.7584 1.2315 46 1 4.0649 0.1810 4.1266 47 1 5.3842 1.3676 5.8315 48 1 4.7715 5.0463 3.7607 RHF calculation, no. of doubly occupied orbitals= 70 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103895837.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:49 Heat of formation + Delta-G solvation = 51.509756 kcal Electronic energy + Delta-G solvation = -35770.984519 eV Core-core repulsion = 31026.204031 eV Total energy + Delta-G solvation = -4744.780487 eV No. of doubly occupied orbitals = 70 Molecular weight (most abundant/longest-lived isotopes) = 376.163 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.64861 -42.17037 -40.09845 -39.40080 -37.04443 -36.62496 -36.31971 -34.16064 -33.31865 -32.33676 -32.14830 -30.57330 -29.06018 -27.02129 -26.92809 -25.99571 -25.20980 -23.43689 -22.94519 -22.56859 -21.40760 -20.56143 -20.20139 -19.26959 -18.89308 -18.50756 -18.24195 -17.94006 -17.61276 -17.44803 -16.55384 -16.32557 -15.46070 -15.10397 -14.81326 -14.60198 -14.50422 -14.32114 -13.83006 -13.62932 -13.31667 -13.03496 -12.62544 -12.61606 -12.45198 -12.41935 -11.93881 -11.88363 -11.65647 -11.63553 -11.49851 -11.46068 -11.27635 -11.24822 -11.20314 -11.20020 -10.97339 -10.73857 -10.64889 -10.57687 -10.23091 -10.21808 -10.03798 -9.81740 -9.23198 -9.10951 -8.46544 -8.12267 -6.09953 -4.08773 -0.34325 -0.26910 0.78612 0.88589 1.13833 1.38967 2.17653 2.35567 2.91416 3.20523 3.28743 3.30740 3.80265 4.13204 4.18607 4.26593 4.34584 4.44143 4.51790 4.61692 4.82025 4.93912 5.03623 5.14899 5.26137 5.28006 5.33589 5.36351 5.47836 5.52020 5.62807 5.64960 5.71072 5.84658 5.88680 5.91744 5.99876 6.09027 6.13873 6.18271 6.24245 6.32116 6.39808 6.54769 6.59620 6.71118 7.30108 7.48626 7.57489 7.59142 7.85817 8.17245 8.27492 8.92298 9.51966 11.01152 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007170 B = 0.004139 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3904.214940 B = 6762.684569 C = 9793.972003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.100 4.100 3 H 0.068 0.932 4 C -0.105 4.105 5 C -0.124 4.124 6 C -0.112 4.112 7 C -0.028 4.028 8 H 0.087 0.913 9 C 0.031 3.969 10 C -0.493 4.493 11 H 0.050 0.950 12 C 0.061 3.939 13 N -0.894 5.894 14 Si 0.876 3.124 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.279 1.279 18 C 0.146 3.854 19 N -0.208 5.208 20 N -0.568 5.568 21 C 0.342 3.658 22 C -0.143 4.143 23 C 0.015 3.985 24 C -0.101 4.101 25 N 0.043 4.957 26 O -0.156 6.156 27 O -0.170 6.170 28 C 0.047 3.953 29 C -0.130 4.130 30 N 0.042 4.958 31 O -0.181 6.181 32 O -0.133 6.133 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.261 0.739 45 H 0.394 0.606 46 H 0.195 0.805 47 H 0.170 0.830 48 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.563 7.329 -10.270 12.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 H 0.087 0.913 4 C -0.143 4.143 5 C -0.162 4.162 6 C -0.151 4.151 7 C -0.049 4.049 8 H 0.105 0.895 9 C -0.006 4.006 10 C -0.532 4.532 11 H 0.068 0.932 12 C -0.139 4.139 13 N -0.534 5.534 14 Si 0.704 3.296 15 H -0.204 1.204 16 H -0.212 1.212 17 H -0.204 1.204 18 C -0.047 4.047 19 N -0.009 5.009 20 N -0.283 5.283 21 C 0.226 3.774 22 C -0.166 4.166 23 C -0.006 4.006 24 C -0.188 4.188 25 N 0.560 4.440 26 O -0.372 6.372 27 O -0.383 6.383 28 C 0.026 3.974 29 C -0.220 4.220 30 N 0.560 4.440 31 O -0.387 6.387 32 O -0.357 6.357 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.042 0.958 43 H 0.042 0.958 44 H 0.071 0.929 45 H 0.241 0.759 46 H 0.212 0.788 47 H 0.187 0.813 48 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -1.167 6.374 -9.291 11.327 hybrid contribution -0.824 1.389 -0.041 1.615 sum -1.992 7.762 -9.332 12.300 Atomic orbital electron populations 1.21779 0.92933 1.03228 1.01881 1.20957 0.97619 0.98689 0.94957 0.91339 1.21536 1.01002 0.95913 0.95871 1.21626 1.01106 0.94758 0.98678 1.21690 1.00472 0.99857 0.93034 1.20571 1.02008 0.84901 0.97375 0.89497 1.19124 0.95314 0.96140 0.90012 1.20940 1.15178 1.26505 0.90542 0.93199 1.24858 0.95141 0.95400 0.98542 1.69920 1.23554 1.34302 1.25617 0.86925 0.79472 0.79333 0.83856 1.20440 1.21161 1.20439 1.25689 0.91833 0.98005 0.89187 1.75359 1.16527 0.86662 1.22330 1.46863 1.50697 1.08820 1.21923 1.17427 0.85343 0.86278 0.88363 1.21324 0.99203 1.03922 0.92108 1.21220 0.91051 0.90507 0.97843 1.20472 1.09811 0.93310 0.95227 1.43253 0.98995 1.00909 1.00810 1.94565 1.50493 1.68369 1.23786 1.94535 1.64397 0.96981 1.82410 1.20114 0.88093 1.01826 0.87363 1.20026 1.16284 0.90182 0.95500 1.43234 0.98402 1.00874 1.01441 1.94475 1.62577 1.71708 1.09957 1.94566 1.45879 1.04525 1.90699 0.90971 0.92824 0.91839 0.91741 0.91347 0.91857 0.91425 0.91825 0.90801 0.95821 0.95834 0.92941 0.75911 0.78835 0.81268 0.81034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 8.90 37.16 0.33 -1.17 16 2 C -0.10 -1.21 2.92 -91.37 -0.27 -1.48 16 3 H 0.07 0.85 5.57 -51.93 -0.29 0.56 16 4 C -0.10 -1.08 5.41 -26.63 -0.14 -1.23 16 5 C -0.12 -1.26 5.65 -26.77 -0.15 -1.41 16 6 C -0.11 -1.45 5.23 -26.63 -0.14 -1.59 16 7 C -0.03 -0.45 2.14 -91.37 -0.20 -0.65 16 8 H 0.09 1.39 7.82 -51.93 -0.41 0.98 16 9 C 0.03 0.67 4.12 -27.89 -0.11 0.56 16 10 C -0.49 -11.86 7.55 -34.44 -0.26 -12.12 16 11 H 0.05 1.21 7.53 -52.48 -0.40 0.82 16 12 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 13 N -0.89 -24.09 13.29 55.43 0.74 -23.35 16 14 Si 0.88 20.04 29.54 -169.99 -5.02 15.02 16 15 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 16 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 18 C 0.15 2.26 5.51 -78.35 -0.43 1.83 16 19 N -0.21 -3.63 7.91 35.88 0.28 -3.35 16 20 N -0.57 -8.85 6.23 32.42 0.20 -8.65 16 21 C 0.34 5.18 6.68 -83.78 -0.56 4.62 16 22 C -0.14 -2.20 9.51 -39.37 -0.37 -2.57 16 23 C 0.01 0.20 9.55 -39.61 -0.38 -0.18 16 24 C -0.10 -1.38 6.85 -79.90 -0.55 -1.92 16 25 N 0.04 0.63 4.45 33.99 0.15 0.78 16 26 O -0.16 -2.42 18.44 -29.46 -0.54 -2.96 16 27 O -0.17 -2.55 18.44 -29.46 -0.54 -3.09 16 28 C 0.05 0.59 9.17 -39.62 -0.36 0.23 16 29 C -0.13 -1.80 6.51 -79.73 -0.52 -2.32 16 30 N 0.04 0.59 4.32 34.07 0.15 0.74 16 31 O -0.18 -2.64 16.66 -29.46 -0.49 -3.13 16 32 O -0.13 -1.91 18.95 -29.46 -0.56 -2.47 16 33 H 0.07 0.74 6.01 -51.93 -0.31 0.43 16 34 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.64 6.42 -51.92 -0.33 0.31 16 40 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.02 0.55 8.05 -51.93 -0.42 0.14 16 43 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 45 H 0.39 5.68 3.53 -182.60 -0.64 5.03 16 46 H 0.19 3.47 7.37 -52.49 -0.39 3.08 16 47 H 0.17 2.10 7.60 -52.48 -0.40 1.70 16 48 H 0.17 1.89 7.56 -52.49 -0.40 1.50 16 LS Contribution 401.62 15.07 6.05 6.05 Total: -1.00 -27.17 401.62 -10.29 -37.46 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -6.50 Total: 4.89 kcal Atomic # 6 Polarization: -13.72 SS G_CDS: -4.21 Total: -17.93 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: 1.52 Total: -33.83 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -2.14 Total: -11.65 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.02 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -27.17 -10.29 -37.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103895837.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.972 kcal (2) G-P(sol) polarization free energy of solvation -27.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds