Wall clock time and date at job start Tue Mar 31 2020 06:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38254 * 119.99742 * 2 1 4 4 C 1.38222 * 119.99736 * 179.97438 * 3 2 1 5 5 C 1.38251 * 119.99988 * 0.25888 * 4 3 2 6 6 S 1.76198 * 120.00008 * 179.72643 * 5 4 3 7 7 O 1.42096 * 106.40604 * 102.01805 * 6 5 4 8 8 O 1.42107 * 106.40181 * 234.94011 * 6 5 4 9 9 N 1.65596 * 107.21877 * 348.47446 * 6 5 4 10 10 C 1.46503 * 120.00391 * 265.78275 * 9 6 5 11 11 C 1.50703 * 109.47189 * 95.36411 * 10 9 6 12 12 H 1.08007 * 119.99702 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00205 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99590 * 359.97438 * 13 11 10 15 15 Si 1.86795 * 120.00036 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47263 * 359.97438 * 15 13 11 17 17 H 1.48503 * 109.47305 * 120.00059 * 15 13 11 18 18 H 1.48505 * 109.47098 * 239.99664 * 15 13 11 19 19 C 1.39679 * 120.00177 * 85.78067 * 9 6 5 20 20 C 1.38917 * 120.06878 * 335.44593 * 19 9 6 21 21 C 1.38111 * 119.92136 * 179.76634 * 20 19 9 22 22 C 1.38286 * 120.07279 * 0.50831 * 21 20 19 23 23 C 1.38286 * 120.15230 * 359.74125 * 22 21 20 24 24 C 1.38104 * 120.07314 * 0.02562 * 23 22 21 25 25 C 1.38216 * 120.00035 * 359.46118 * 5 4 3 26 26 N 1.48021 * 120.00156 * 180.29986 * 25 5 4 27 27 O 1.21796 * 120.00028 * 187.57444 * 26 25 5 28 28 O 1.21800 * 119.99798 * 7.58302 * 26 25 5 29 29 C 1.38214 * 119.99960 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.47039 * 90.00198 * 1 2 3 31 31 H 1.09005 * 109.47158 * 209.99764 * 1 2 3 32 32 H 1.08997 * 109.47512 * 329.99838 * 1 2 3 33 33 H 1.07996 * 120.00680 * 359.97438 * 3 2 1 34 34 H 1.08003 * 119.99651 * 179.97438 * 4 3 2 35 35 H 1.09003 * 109.46985 * 215.36540 * 10 9 6 36 36 H 1.08996 * 109.46815 * 335.36611 * 10 9 6 37 37 H 0.96999 * 119.99687 * 180.02562 * 14 13 11 38 38 H 1.07997 * 120.04047 * 359.97438 * 20 19 9 39 39 H 1.07999 * 119.96275 * 180.25056 * 21 20 19 40 40 H 1.08003 * 119.92219 * 179.72240 * 22 21 20 41 41 H 1.07991 * 119.96496 * 179.97438 * 23 22 21 42 42 H 1.07997 * 120.03616 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.00265 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2716 0.0001 -0.0043 6 16 6.0336 0.0001 -0.0109 7 8 6.4400 -0.2863 1.3202 8 8 6.4307 -0.7809 -1.1298 9 7 6.5226 1.5505 -0.3259 10 6 6.8235 1.9589 -1.7003 11 6 5.6079 2.6100 -2.3084 12 1 4.7020 2.7099 -1.7288 13 6 5.6522 3.0780 -3.6045 14 7 6.7555 2.9567 -4.3100 15 14 4.1458 3.8856 -4.3579 16 1 3.0425 3.8997 -3.3641 17 1 4.4758 5.2789 -4.7517 18 1 3.7212 3.1196 -5.5573 19 6 6.6483 2.4691 0.7189 20 6 5.9187 2.2970 1.8885 21 6 6.0489 3.2045 2.9214 22 6 6.8964 4.2890 2.7883 23 6 7.6202 4.4661 1.6234 24 6 7.4984 3.5599 0.5885 25 6 3.5806 -1.1969 0.0015 26 7 4.3207 -2.4788 0.0030 27 8 3.7193 -3.5294 -0.1309 28 8 5.5312 -2.4830 0.1383 29 6 2.1980 -1.1970 0.0005 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5138 33 1 1.6583 2.1327 -0.0004 34 1 4.1204 2.1327 0.0001 35 1 7.6514 2.6679 -1.6957 36 1 7.0985 1.0829 -2.2876 37 1 6.7868 3.2863 -5.2217 38 1 5.2529 1.4529 1.9911 39 1 5.4850 3.0691 3.8326 40 1 6.9930 4.9996 3.5960 41 1 8.2809 5.3144 1.5226 42 1 8.0637 3.6989 -0.3212 43 1 1.6581 -2.1323 0.0014 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108760327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:20 Heat of formation + Delta-G solvation = -5.701640 kcal Electronic energy + Delta-G solvation = -33783.541878 eV Core-core repulsion = 29310.907544 eV Total energy + Delta-G solvation = -4472.634334 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 376.097 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.33522 -39.79078 -39.21049 -36.84254 -36.76611 -35.68197 -35.37779 -33.66142 -32.82313 -32.12693 -30.66113 -29.39081 -27.85745 -26.97510 -26.76413 -23.67021 -23.02491 -22.48683 -22.07940 -21.23320 -19.69664 -18.88270 -18.58296 -17.83358 -17.65868 -17.16704 -16.75465 -16.64582 -15.72537 -15.55098 -15.03029 -14.94750 -14.69245 -14.47416 -14.29463 -14.08033 -13.72619 -13.14539 -13.11896 -12.92369 -12.77907 -12.74257 -12.50195 -12.17996 -12.11943 -11.81578 -11.65618 -11.55089 -11.44328 -11.35937 -11.28812 -11.09984 -11.03020 -10.88553 -10.83415 -10.64887 -10.43507 -10.20758 -9.75207 -9.58057 -9.29758 -8.69545 -8.63346 -7.61291 -6.31626 -4.40695 -0.42392 0.48840 0.56633 1.18570 1.25774 1.68456 1.76601 2.91142 3.09316 3.10194 3.18341 3.19339 3.85190 4.08183 4.13571 4.19583 4.29779 4.50517 4.57205 4.81276 4.89969 4.99280 5.02739 5.07476 5.15330 5.18898 5.26242 5.30270 5.34989 5.50664 5.57580 5.63249 5.66180 5.82382 5.89236 6.05918 6.16131 6.32180 6.34902 6.59238 6.79245 6.87226 7.05834 7.09639 7.14855 7.50404 7.53092 7.60664 7.84199 8.59526 9.25941 10.76372 Molecular weight = 376.10amu Principal moments of inertia in cm(-1) A = 0.007121 B = 0.005303 C = 0.004310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3930.995330 B = 5279.254383 C = 6495.542262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.043 4.043 3 C -0.087 4.087 4 C -0.008 4.008 5 C -0.621 4.621 6 S 2.694 3.306 7 O -0.939 6.939 8 O -0.919 6.919 9 N -0.926 5.926 10 C 0.228 3.772 11 C -0.551 4.551 12 H 0.063 0.937 13 C 0.071 3.929 14 N -0.881 5.881 15 Si 0.894 3.106 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.281 1.281 19 C 0.195 3.805 20 C -0.181 4.181 21 C -0.086 4.086 22 C -0.158 4.158 23 C -0.091 4.091 24 C -0.133 4.133 25 C 0.046 3.954 26 N 0.017 4.983 27 O -0.126 6.126 28 O -0.157 6.157 29 C -0.073 4.073 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.080 0.920 33 H 0.151 0.849 34 H 0.168 0.832 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.268 0.732 38 H 0.116 0.884 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.122 0.878 42 H 0.137 0.863 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.207 0.694 11.258 15.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.044 4.044 3 C -0.106 4.106 4 C -0.027 4.027 5 C -0.702 4.702 6 S 2.778 3.222 7 O -0.929 6.929 8 O -0.909 6.909 9 N -0.753 5.753 10 C 0.108 3.892 11 C -0.590 4.590 12 H 0.081 0.919 13 C -0.134 4.134 14 N -0.518 5.518 15 Si 0.721 3.279 16 H -0.197 1.197 17 H -0.205 1.205 18 H -0.207 1.207 19 C 0.098 3.902 20 C -0.203 4.203 21 C -0.104 4.104 22 C -0.178 4.178 23 C -0.110 4.110 24 C -0.155 4.155 25 C -0.037 4.037 26 N 0.538 4.462 27 O -0.350 6.350 28 O -0.367 6.367 29 C -0.093 4.093 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.169 0.831 34 H 0.185 0.815 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.134 0.866 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.140 0.860 42 H 0.155 0.845 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -9.960 0.562 11.098 14.922 hybrid contribution -1.327 0.421 -0.833 1.622 sum -11.287 0.983 10.265 15.289 Atomic orbital electron populations 1.20943 0.88778 1.04086 1.03792 1.20171 0.97376 0.91691 0.95134 1.21663 0.94265 0.98811 0.95866 1.21367 0.94969 0.96527 0.89866 1.31283 1.31462 0.96443 1.11005 1.02690 0.72995 0.72077 0.74439 1.93599 1.79179 1.82939 1.37196 1.93624 1.79101 1.65323 1.52812 1.55932 1.75930 1.27930 1.15531 1.19695 0.98294 0.98536 0.72633 1.21439 0.98297 1.40779 0.98480 0.91854 1.24896 0.96332 0.95465 0.96679 1.69918 1.26356 1.45159 1.10360 0.86512 0.82615 0.79363 0.79433 1.19680 1.20479 1.20659 1.17582 0.94414 0.91224 0.87005 1.20986 1.02689 1.01777 0.94838 1.20738 0.98247 0.93929 0.97525 1.20963 0.99599 0.98930 0.98278 1.20980 0.98664 0.98380 0.92961 1.21039 0.99411 0.94743 1.00357 1.20414 0.92630 0.82036 1.08654 1.43745 1.01357 1.02908 0.98235 1.94479 1.69863 1.19691 1.50933 1.94563 0.95796 1.92922 1.53405 1.20951 0.90504 1.00618 0.97197 0.89607 0.90387 0.90150 0.83116 0.81459 0.92527 0.91725 0.92226 0.86594 0.86146 0.86464 0.85972 0.84502 0.82258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.79 10.01 36.00 0.36 -0.43 16 2 C -0.04 -0.47 5.88 -104.63 -0.62 -1.08 16 3 C -0.09 -1.06 9.70 -39.58 -0.38 -1.45 16 4 C -0.01 -0.13 7.66 -39.58 -0.30 -0.44 16 5 C -0.62 -11.57 5.36 -39.58 -0.21 -11.78 16 6 S 2.69 58.36 3.36 -107.50 -0.36 57.99 16 7 O -0.94 -20.69 14.70 -65.09 -0.96 -21.65 16 8 O -0.92 -22.74 14.31 -66.98 -0.96 -23.70 16 9 N -0.93 -19.45 2.15 -59.80 -0.13 -19.58 16 10 C 0.23 5.44 5.16 -5.19 -0.03 5.41 16 11 C -0.55 -13.63 9.36 -34.44 -0.32 -13.95 16 12 H 0.06 1.46 5.46 -52.48 -0.29 1.17 16 13 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 14 N -0.88 -23.96 13.29 55.43 0.74 -23.23 16 15 Si 0.89 19.64 29.54 -169.99 -5.02 14.61 16 16 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 19 C 0.20 3.67 5.52 -83.78 -0.46 3.21 16 20 C -0.18 -3.04 7.34 -39.38 -0.29 -3.33 16 21 C -0.09 -1.20 10.04 -39.61 -0.40 -1.60 16 22 C -0.16 -2.07 10.04 -39.55 -0.40 -2.47 16 23 C -0.09 -1.29 10.04 -39.61 -0.40 -1.69 16 24 C -0.13 -2.31 9.35 -39.38 -0.37 -2.68 16 25 C 0.05 0.81 6.82 -79.95 -0.54 0.26 16 26 N 0.02 0.34 4.45 33.96 0.15 0.49 16 27 O -0.13 -2.22 18.47 -29.46 -0.54 -2.76 16 28 O -0.16 -3.48 13.79 -39.52 -0.55 -4.02 16 29 C -0.07 -0.95 9.21 -39.58 -0.36 -1.32 16 30 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.41 8.09 -51.93 -0.42 -0.01 16 32 H 0.08 0.41 8.09 -51.93 -0.42 -0.01 16 33 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 34 H 0.17 2.71 4.51 -52.48 -0.24 2.47 16 35 H 0.06 1.34 6.04 -51.93 -0.31 1.03 16 36 H 0.06 1.70 6.87 -51.93 -0.36 1.34 16 37 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 38 H 0.12 1.92 5.01 -52.49 -0.26 1.66 16 39 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 40 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 41 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 42 H 0.14 2.43 6.19 -52.49 -0.32 2.10 16 43 H 0.16 1.62 7.63 -52.49 -0.40 1.22 16 LS Contribution 368.89 15.07 5.56 5.56 Total: -1.00 -32.35 368.89 -11.16 -43.51 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -4.27 Total: 4.38 kcal Atomic # 6 Polarization: -26.78 SS G_CDS: -4.82 Total: -31.61 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 0.76 Total: -42.32 kcal Atomic # 8 Polarization: -49.13 SS G_CDS: -3.00 Total: -52.13 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.61 kcal Atomic # 16 Polarization: 58.36 SS G_CDS: -0.36 Total: 57.99 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.35 -11.16 -43.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108760327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.807 kcal (2) G-P(sol) polarization free energy of solvation -32.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds