Wall clock time and date at job start Tue Mar 31 2020 06:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.46753 * 2 1 4 4 C 1.35970 * 116.99769 * 180.02562 * 3 2 1 5 5 C 1.38731 * 119.98191 * 179.97438 * 4 3 2 6 6 C 1.38084 * 120.01626 * 180.02562 * 5 4 3 7 7 C 1.38868 * 119.98444 * 0.27410 * 6 5 4 8 8 N 1.40018 * 120.01837 * 179.71747 * 7 6 5 9 9 C 1.46507 * 120.00278 * 172.51855 * 8 7 6 10 10 C 1.50705 * 109.46604 * 71.83075 * 9 8 7 11 11 H 1.07990 * 120.00076 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99254 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00637 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99558 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47287 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47177 * 120.00034 * 14 12 10 17 17 H 1.48507 * 109.47013 * 240.00100 * 14 12 10 18 18 C 1.34778 * 120.00334 * 352.52571 * 8 7 6 19 19 O 1.21622 * 119.99715 * 0.31113 * 18 8 7 20 20 C 1.47407 * 120.00215 * 180.31196 * 18 8 7 21 21 C 1.38968 * 121.17578 * 33.56132 * 20 18 8 22 22 N 1.32187 * 121.31932 * 179.69587 * 21 20 18 23 23 C 1.31205 * 123.69634 * 0.60929 * 22 21 20 24 24 C 1.40379 * 120.91572 * 359.68623 * 23 22 21 25 25 C 1.40390 * 122.14157 * 179.97438 * 24 23 22 26 26 C 1.36232 * 119.49324 * 180.02562 * 25 24 23 27 27 C 1.39295 * 121.09890 * 0.04597 * 26 25 24 28 28 C 1.36441 * 120.95037 * 359.97438 * 27 26 25 29 29 C 1.39694 * 119.43454 * 359.97438 * 28 27 26 30 30 C 1.38872 * 119.96475 * 359.47731 * 7 6 5 31 31 C 1.38090 * 119.98027 * 0.50091 * 30 7 6 32 32 H 1.08998 * 109.47337 * 299.99558 * 1 2 3 33 33 H 1.09005 * 109.47538 * 60.00204 * 1 2 3 34 34 H 1.09005 * 109.46719 * 180.02562 * 1 2 3 35 35 H 1.08993 * 109.47581 * 240.00032 * 2 1 3 36 36 H 1.09003 * 109.47112 * 119.99479 * 2 1 3 37 37 H 1.08000 * 119.99384 * 0.02562 * 5 4 3 38 38 H 1.08005 * 120.00687 * 180.02562 * 6 5 4 39 39 H 1.09001 * 109.47353 * 191.83460 * 9 8 7 40 40 H 1.08999 * 109.46982 * 311.83643 * 9 8 7 41 41 H 0.96995 * 120.00071 * 180.02562 * 13 12 10 42 42 H 1.08008 * 119.33716 * 359.97438 * 21 20 18 43 43 H 1.08002 * 119.53840 * 179.71500 * 23 22 21 44 44 H 1.08001 * 120.25308 * 0.02562 * 25 24 23 45 45 H 1.07997 * 119.45141 * 180.02562 * 26 25 24 46 46 H 1.07998 * 119.52057 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.28527 * 179.97438 * 28 27 26 48 48 H 1.07993 * 120.01061 * 180.23166 * 30 7 6 49 49 H 1.08001 * 119.98873 * 179.75085 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3542 1.5255 -0.0005 5 6 3.8840 2.8077 -0.0011 6 6 5.2528 2.9894 -0.0022 7 6 6.0991 1.8885 -0.0085 8 7 7.4872 2.0720 -0.0156 9 6 8.3792 0.9206 0.1430 10 6 8.3495 0.0857 -1.1112 11 1 7.7287 0.3832 -1.9433 12 6 9.1149 -1.0579 -1.1963 13 7 9.8706 -1.4204 -0.1828 14 14 9.0787 -2.0924 -2.7513 15 1 8.1554 -1.4737 -3.7361 16 1 10.4444 -2.1646 -3.3298 17 1 8.6068 -3.4619 -2.4238 18 6 8.0029 3.3078 -0.1681 19 8 7.2624 4.2644 -0.2940 20 6 9.4643 3.5001 -0.1825 21 6 10.3113 2.5372 -0.7176 22 7 11.6218 2.7093 -0.7374 23 6 12.2239 3.7709 -0.2556 24 6 11.4878 4.8187 0.3197 25 6 12.1053 5.9656 0.8432 26 6 11.3384 6.9499 1.3899 27 6 9.9509 6.8372 1.4393 28 6 9.3181 5.7362 0.9402 29 6 10.0744 4.7086 0.3716 30 6 5.5680 0.6053 -0.0027 31 6 4.1989 0.4252 -0.0011 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 3.2257 3.6639 -0.0007 38 1 5.6651 3.9877 -0.0022 39 1 9.3958 1.2706 0.3227 40 1 8.0477 0.3180 0.9886 41 1 10.4093 -2.2247 -0.2428 42 1 9.8902 1.6320 -1.1297 43 1 13.3007 3.8397 -0.3029 44 1 13.1801 6.0669 0.8128 45 1 11.8141 7.8321 1.7921 46 1 9.3676 7.6328 1.8788 47 1 8.2417 5.6598 0.9844 48 1 6.2255 -0.2514 -0.0038 49 1 3.7858 -0.5727 -0.0007 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108809154.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:38 Heat of formation + Delta-G solvation = 40.915255 kcal Electronic energy + Delta-G solvation = -33887.291108 eV Core-core repulsion = 29552.900472 eV Total energy + Delta-G solvation = -4334.390636 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.91599 -39.95905 -39.10316 -37.20563 -36.89736 -35.21070 -32.87488 -32.59757 -31.66888 -30.97666 -30.42210 -29.88231 -28.16699 -27.49184 -24.66353 -23.93474 -23.48097 -23.09687 -22.82213 -21.43591 -21.33658 -19.39187 -18.02008 -17.90069 -17.28080 -16.98736 -16.64541 -16.23848 -15.92646 -15.75738 -15.11618 -14.89794 -14.70402 -14.59427 -14.12403 -13.88442 -13.64350 -13.60777 -13.44869 -13.16891 -13.12527 -12.86910 -12.80585 -12.55046 -12.42955 -12.18176 -12.04109 -11.83215 -11.76864 -11.61934 -11.25097 -11.15361 -11.07073 -10.78992 -10.59407 -10.48462 -10.27046 -10.01338 -9.81099 -9.32005 -9.02564 -8.90012 -8.77883 -8.65771 -8.44616 -7.84895 -6.95973 -6.37428 -4.49582 0.33390 1.10069 1.71598 1.90390 2.03042 3.13070 3.14865 3.24165 3.27995 3.34796 3.44001 3.56307 4.18454 4.27860 4.42970 4.59452 4.74291 4.82874 4.86612 4.91786 4.93604 4.98248 5.01664 5.17159 5.22426 5.27935 5.35299 5.38196 5.46909 5.50599 5.73807 5.75159 5.82577 5.83582 5.92213 5.94707 6.04095 6.10057 6.14566 6.32076 6.34829 6.49445 6.57501 6.60595 6.69923 6.85629 6.88327 6.91467 6.99508 7.01667 7.12026 7.54466 7.56668 7.73966 7.84818 8.03387 8.27188 8.54732 8.68348 9.19711 10.66767 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007673 B = 0.003351 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3648.141609 B = 8354.243730 C =11654.806753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.323 6.323 4 C 0.090 3.910 5 C -0.141 4.141 6 C -0.136 4.136 7 C 0.133 3.867 8 N -0.522 5.522 9 C 0.207 3.793 10 C -0.553 4.553 11 H 0.070 0.930 12 C 0.075 3.925 13 N -0.874 5.874 14 Si 0.898 3.102 15 H -0.269 1.269 16 H -0.278 1.278 17 H -0.280 1.280 18 C 0.566 3.434 19 O -0.540 6.540 20 C -0.186 4.186 21 C 0.133 3.867 22 N -0.488 5.488 23 C 0.163 3.837 24 C -0.128 4.128 25 C -0.085 4.085 26 C -0.130 4.130 27 C -0.102 4.102 28 C -0.105 4.105 29 C 0.016 3.984 30 C -0.095 4.095 31 C -0.193 4.193 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.123 0.877 38 H 0.184 0.816 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.270 0.730 42 H 0.210 0.790 43 H 0.161 0.839 44 H 0.131 0.869 45 H 0.123 0.877 46 H 0.124 0.876 47 H 0.146 0.854 48 H 0.152 0.848 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.315 8.635 3.439 9.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.238 6.238 4 C 0.046 3.954 5 C -0.160 4.160 6 C -0.155 4.155 7 C 0.038 3.962 8 N -0.240 5.240 9 C 0.088 3.912 10 C -0.591 4.591 11 H 0.088 0.912 12 C -0.131 4.131 13 N -0.509 5.509 14 Si 0.724 3.276 15 H -0.194 1.194 16 H -0.204 1.204 17 H -0.206 1.206 18 C 0.357 3.643 19 O -0.422 6.422 20 C -0.191 4.191 21 C -0.009 4.009 22 N -0.195 5.195 23 C -0.009 4.009 24 C -0.131 4.131 25 C -0.105 4.105 26 C -0.148 4.148 27 C -0.121 4.121 28 C -0.123 4.123 29 C 0.010 3.990 30 C -0.115 4.115 31 C -0.212 4.212 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.141 0.859 38 H 0.200 0.800 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.226 0.774 43 H 0.178 0.822 44 H 0.149 0.851 45 H 0.141 0.859 46 H 0.142 0.858 47 H 0.163 0.837 48 H 0.170 0.830 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.266 8.330 3.052 9.453 hybrid contribution -0.293 -0.509 -0.391 0.705 sum -3.559 7.821 2.661 8.995 Atomic orbital electron populations 1.21757 0.93297 1.02467 1.03209 1.22671 0.95304 0.82799 1.01311 1.86014 1.19745 1.28432 1.89609 1.19003 0.81624 0.94428 1.00383 1.20317 0.94859 0.94120 1.06686 1.22569 0.91554 1.01918 0.99507 1.17865 0.82473 0.93955 1.01906 1.45781 1.05129 1.08778 1.64305 1.20321 0.89991 0.82250 0.98631 1.21380 1.28270 1.08713 1.00740 0.91156 1.24950 0.94345 0.96991 0.96839 1.69924 1.25962 1.24736 1.30325 0.86419 0.78429 0.79955 0.82758 1.19354 1.20373 1.20624 1.17921 0.87198 0.82492 0.76641 1.90318 1.59138 1.41071 1.51679 1.21739 0.93960 0.96471 1.06933 1.24559 0.87525 0.97952 0.90909 1.67371 1.12579 1.22909 1.16593 1.23361 1.00109 0.87546 0.89873 1.18966 0.93234 0.97512 1.03348 1.20922 0.99813 0.92505 0.97218 1.20860 0.93997 0.99265 1.00678 1.21028 0.94609 0.97866 0.98608 1.21270 1.01470 0.92699 0.96865 1.18873 0.92203 0.92900 0.94986 1.21147 0.94507 0.97062 0.98785 1.20987 0.93720 0.97521 1.08956 0.91757 0.91734 0.90716 0.92276 0.92317 0.85879 0.80039 0.91793 0.94066 0.92004 0.77408 0.82209 0.85084 0.85900 0.85761 0.83673 0.83047 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 37.15 0.38 -0.98 16 2 C 0.05 0.65 5.46 37.15 0.20 0.85 16 3 O -0.32 -5.00 10.14 -19.65 -0.20 -5.20 16 4 C 0.09 1.56 6.69 -39.22 -0.26 1.30 16 5 C -0.14 -2.47 9.98 -39.46 -0.39 -2.86 16 6 C -0.14 -2.63 9.02 -39.40 -0.36 -2.98 16 7 C 0.13 2.75 6.39 -83.65 -0.53 2.21 16 8 N -0.52 -11.18 2.76 -115.89 -0.32 -11.51 16 9 C 0.21 4.72 4.05 -5.19 -0.02 4.70 16 10 C -0.55 -13.34 5.74 -34.44 -0.20 -13.54 16 11 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 12 C 0.08 1.84 5.46 -17.82 -0.10 1.75 16 13 N -0.87 -22.45 13.29 55.43 0.74 -21.72 16 14 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 15 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 16 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 C 0.57 11.81 7.18 -12.53 -0.09 11.72 16 19 O -0.54 -11.24 11.13 5.26 0.06 -11.18 16 20 C -0.19 -3.68 5.57 -102.67 -0.57 -4.25 16 21 C 0.13 2.73 8.57 -17.13 -0.15 2.58 16 22 N -0.49 -9.23 10.22 -12.58 -0.13 -9.36 16 23 C 0.16 2.46 11.00 -17.01 -0.19 2.27 16 24 C -0.13 -1.92 5.74 -106.89 -0.61 -2.53 16 25 C -0.08 -0.97 9.82 -39.49 -0.39 -1.36 16 26 C -0.13 -1.40 9.94 -39.91 -0.40 -1.80 16 27 C -0.10 -1.25 9.96 -39.84 -0.40 -1.64 16 28 C -0.11 -1.64 9.26 -39.69 -0.37 -2.01 16 29 C 0.02 0.27 5.90 -104.74 -0.62 -0.34 16 30 C -0.09 -1.88 8.83 -39.40 -0.35 -2.23 16 31 C -0.19 -3.35 9.03 -39.46 -0.36 -3.70 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.68 7.66 -51.93 -0.40 0.28 16 36 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 37 H 0.12 1.91 8.06 -52.49 -0.42 1.49 16 38 H 0.18 3.58 4.58 -55.99 -0.26 3.33 16 39 H 0.06 1.51 4.13 -51.93 -0.21 1.30 16 40 H 0.04 1.00 7.63 -51.93 -0.40 0.60 16 41 H 0.27 6.63 8.31 -40.82 -0.34 6.29 16 42 H 0.21 4.76 4.19 -52.48 -0.22 4.54 16 43 H 0.16 1.73 8.06 -52.49 -0.42 1.31 16 44 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 45 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 46 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 47 H 0.15 2.38 6.01 -52.49 -0.32 2.06 16 48 H 0.15 3.19 5.79 -52.49 -0.30 2.88 16 49 H 0.12 1.84 6.29 -52.49 -0.33 1.51 16 LS Contribution 397.03 15.07 5.98 5.98 Total: -1.00 -28.22 397.03 -10.41 -38.62 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -5.76 Total: 12.65 kcal Atomic # 6 Polarization: -7.08 SS G_CDS: -5.76 Total: -12.84 kcal Atomic # 7 Polarization: -42.87 SS G_CDS: 0.29 Total: -42.58 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: -0.14 Total: -16.38 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -28.22 -10.41 -38.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108809154.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.540 kcal (2) G-P(sol) polarization free energy of solvation -28.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds