Wall clock time and date at job start Tue Mar 31 2020 06:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42902 * 109.46753 * 2 1 4 4 C 1.35970 * 116.99769 * 180.02562 * 3 2 1 5 5 C 1.38731 * 119.98191 * 179.97438 * 4 3 2 6 6 C 1.38084 * 120.01626 * 180.02562 * 5 4 3 7 7 C 1.38868 * 119.98444 * 0.27410 * 6 5 4 8 8 N 1.40018 * 120.01837 * 179.71747 * 7 6 5 9 9 C 1.46507 * 120.00278 * 172.51855 * 8 7 6 10 10 C 1.50705 * 109.46604 * 71.83075 * 9 8 7 11 11 H 1.07990 * 120.00076 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99254 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00637 * 0.02562 * 12 10 9 14 14 Si 1.86805 * 119.99558 * 180.02562 * 12 10 9 15 15 H 1.48497 * 109.47287 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47177 * 120.00034 * 14 12 10 17 17 H 1.48507 * 109.47013 * 240.00100 * 14 12 10 18 18 C 1.34778 * 120.00334 * 352.52571 * 8 7 6 19 19 O 1.21622 * 119.99715 * 0.31113 * 18 8 7 20 20 C 1.47407 * 120.00215 * 180.31196 * 18 8 7 21 21 C 1.38968 * 121.17578 * 33.56132 * 20 18 8 22 22 N 1.32187 * 121.31932 * 179.69587 * 21 20 18 23 23 C 1.31205 * 123.69634 * 0.60929 * 22 21 20 24 24 C 1.40379 * 120.91572 * 359.68623 * 23 22 21 25 25 C 1.40390 * 122.14157 * 179.97438 * 24 23 22 26 26 C 1.36232 * 119.49324 * 180.02562 * 25 24 23 27 27 C 1.39295 * 121.09890 * 0.04597 * 26 25 24 28 28 C 1.36441 * 120.95037 * 359.97438 * 27 26 25 29 29 C 1.39694 * 119.43454 * 359.97438 * 28 27 26 30 30 C 1.38872 * 119.96475 * 359.47731 * 7 6 5 31 31 C 1.38090 * 119.98027 * 0.50091 * 30 7 6 32 32 H 1.08998 * 109.47337 * 299.99558 * 1 2 3 33 33 H 1.09005 * 109.47538 * 60.00204 * 1 2 3 34 34 H 1.09005 * 109.46719 * 180.02562 * 1 2 3 35 35 H 1.08993 * 109.47581 * 240.00032 * 2 1 3 36 36 H 1.09003 * 109.47112 * 119.99479 * 2 1 3 37 37 H 1.08000 * 119.99384 * 0.02562 * 5 4 3 38 38 H 1.08005 * 120.00687 * 180.02562 * 6 5 4 39 39 H 1.09001 * 109.47353 * 191.83460 * 9 8 7 40 40 H 1.08999 * 109.46982 * 311.83643 * 9 8 7 41 41 H 0.96995 * 120.00071 * 180.02562 * 13 12 10 42 42 H 1.08008 * 119.33716 * 359.97438 * 21 20 18 43 43 H 1.08002 * 119.53840 * 179.71500 * 23 22 21 44 44 H 1.08001 * 120.25308 * 0.02562 * 25 24 23 45 45 H 1.07997 * 119.45141 * 180.02562 * 26 25 24 46 46 H 1.07998 * 119.52057 * 179.97438 * 27 26 25 47 47 H 1.08001 * 120.28527 * 179.97438 * 28 27 26 48 48 H 1.07993 * 120.01061 * 180.23166 * 30 7 6 49 49 H 1.08001 * 119.98873 * 179.75085 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3542 1.5255 -0.0005 5 6 3.8840 2.8077 -0.0011 6 6 5.2528 2.9894 -0.0022 7 6 6.0991 1.8885 -0.0085 8 7 7.4872 2.0720 -0.0156 9 6 8.3792 0.9206 0.1430 10 6 8.3495 0.0857 -1.1112 11 1 7.7287 0.3832 -1.9433 12 6 9.1149 -1.0579 -1.1963 13 7 9.8706 -1.4204 -0.1828 14 14 9.0787 -2.0924 -2.7513 15 1 8.1554 -1.4737 -3.7361 16 1 10.4444 -2.1646 -3.3298 17 1 8.6068 -3.4619 -2.4238 18 6 8.0029 3.3078 -0.1681 19 8 7.2624 4.2644 -0.2940 20 6 9.4643 3.5001 -0.1825 21 6 10.3113 2.5372 -0.7176 22 7 11.6218 2.7093 -0.7374 23 6 12.2239 3.7709 -0.2556 24 6 11.4878 4.8187 0.3197 25 6 12.1053 5.9656 0.8432 26 6 11.3384 6.9499 1.3899 27 6 9.9509 6.8372 1.4393 28 6 9.3181 5.7362 0.9402 29 6 10.0744 4.7086 0.3716 30 6 5.5680 0.6053 -0.0027 31 6 4.1989 0.4252 -0.0011 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 3.2257 3.6639 -0.0007 38 1 5.6651 3.9877 -0.0022 39 1 9.3958 1.2706 0.3227 40 1 8.0477 0.3180 0.9886 41 1 10.4093 -2.2247 -0.2428 42 1 9.8902 1.6320 -1.1297 43 1 13.3007 3.8397 -0.3029 44 1 13.1801 6.0669 0.8128 45 1 11.8141 7.8321 1.7921 46 1 9.3676 7.6328 1.8788 47 1 8.2417 5.6598 0.9844 48 1 6.2255 -0.2514 -0.0038 49 1 3.7858 -0.5727 -0.0007 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000108809154.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:37 Heat of formation + Delta-G solvation = 27.023438 kcal Electronic energy + Delta-G solvation = -33887.893502 eV Core-core repulsion = 29552.900472 eV Total energy + Delta-G solvation = -4334.993031 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.34094 -41.27591 -40.43475 -38.43602 -38.30743 -36.79964 -34.67797 -33.87684 -32.67637 -32.12841 -31.87417 -31.08488 -29.74027 -29.10481 -26.00511 -25.26484 -24.99688 -24.38670 -23.99686 -22.75544 -22.67121 -20.85332 -19.28890 -19.21439 -18.85913 -18.53350 -18.00072 -17.83582 -16.99566 -16.95752 -16.50591 -16.42113 -16.29028 -15.91932 -15.52460 -15.25064 -15.00811 -14.83010 -14.64697 -14.51328 -14.32598 -14.26145 -14.20369 -13.99752 -13.78468 -13.33191 -13.20007 -13.11877 -12.96986 -12.85336 -12.81178 -12.67027 -12.40549 -12.22103 -12.14694 -11.95802 -11.69966 -11.63242 -11.08989 -10.74718 -10.68349 -10.53983 -10.16943 -10.02415 -9.93380 -9.08342 -8.53170 -8.24882 -6.45909 -0.88386 -0.06747 0.33475 0.41177 0.77239 1.37413 1.41686 1.51518 1.70623 1.90832 2.16337 2.32430 2.36581 2.89607 2.98580 3.08238 3.25900 3.59436 3.62011 3.75270 3.88950 3.94240 3.95743 4.03035 4.07543 4.19288 4.29266 4.31217 4.33819 4.40215 4.51632 4.55341 4.64204 4.69215 4.71872 4.77999 4.86507 4.96149 5.02028 5.08591 5.12234 5.15769 5.20763 5.22990 5.36814 5.41841 5.45750 5.52351 5.56540 5.58439 5.62494 5.83929 5.93960 6.06740 6.35380 6.50634 6.66078 6.93939 7.03537 7.25527 8.75643 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007673 B = 0.003351 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3648.141609 B = 8354.243730 C =11654.806753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.041 3.959 3 O -0.328 6.328 4 C 0.098 3.902 5 C -0.140 4.140 6 C -0.143 4.143 7 C 0.104 3.896 8 N -0.529 5.529 9 C 0.226 3.774 10 C -0.547 4.547 11 H 0.054 0.946 12 C 0.038 3.962 13 N -0.902 5.902 14 Si 0.954 3.046 15 H -0.273 1.273 16 H -0.276 1.276 17 H -0.273 1.273 18 C 0.560 3.440 19 O -0.548 6.548 20 C -0.213 4.213 21 C 0.120 3.880 22 N -0.526 5.526 23 C 0.181 3.819 24 C -0.142 4.142 25 C -0.069 4.069 26 C -0.123 4.123 27 C -0.080 4.080 28 C -0.143 4.143 29 C -0.004 4.004 30 C -0.109 4.109 31 C -0.187 4.187 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.099 0.901 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.146 0.854 38 H 0.176 0.824 39 H 0.058 0.942 40 H 0.018 0.982 41 H 0.272 0.728 42 H 0.177 0.823 43 H 0.209 0.791 44 H 0.178 0.822 45 H 0.170 0.830 46 H 0.154 0.846 47 H 0.124 0.876 48 H 0.132 0.868 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 10.739 3.998 11.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 O -0.243 6.243 4 C 0.053 3.947 5 C -0.159 4.159 6 C -0.162 4.162 7 C 0.010 3.990 8 N -0.248 5.248 9 C 0.107 3.893 10 C -0.585 4.585 11 H 0.073 0.927 12 C -0.165 4.165 13 N -0.539 5.539 14 Si 0.779 3.221 15 H -0.198 1.198 16 H -0.201 1.201 17 H -0.198 1.198 18 C 0.353 3.647 19 O -0.431 6.431 20 C -0.218 4.218 21 C -0.022 4.022 22 N -0.233 5.233 23 C 0.009 3.991 24 C -0.144 4.144 25 C -0.088 4.088 26 C -0.141 4.141 27 C -0.099 4.099 28 C -0.161 4.161 29 C -0.010 4.010 30 C -0.129 4.129 31 C -0.206 4.206 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.118 0.882 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.164 0.836 38 H 0.193 0.807 39 H 0.075 0.925 40 H 0.036 0.964 41 H 0.082 0.918 42 H 0.193 0.807 43 H 0.226 0.774 44 H 0.196 0.804 45 H 0.187 0.813 46 H 0.172 0.828 47 H 0.142 0.858 48 H 0.150 0.850 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.581 10.435 3.611 11.339 hybrid contribution -0.528 -0.955 -0.470 1.188 sum -3.109 9.480 3.142 10.460 Atomic orbital electron populations 1.21783 0.90939 1.04164 1.03290 1.23057 0.97210 0.81117 1.01954 1.86031 1.18191 1.30916 1.89118 1.19024 0.82654 0.94041 0.98996 1.20535 0.94289 0.95362 1.05672 1.22508 0.92353 1.01154 1.00182 1.18172 0.82358 0.94913 1.03545 1.45754 1.05456 1.08617 1.64935 1.19939 0.89866 0.82318 0.97204 1.21326 1.27695 1.08960 1.00526 0.92735 1.25547 0.93989 0.97819 0.99142 1.70002 1.26812 1.25296 1.31820 0.85564 0.78203 0.78727 0.79649 1.19752 1.20127 1.19785 1.18243 0.88082 0.82134 0.76269 1.90287 1.59596 1.41008 1.52178 1.21714 0.92965 0.98139 1.09014 1.23982 0.88762 0.97304 0.92190 1.67326 1.11602 1.25248 1.19170 1.24159 1.02050 0.85950 0.86916 1.19299 0.92099 0.99086 1.03952 1.21457 1.02170 0.90418 0.94744 1.21401 0.93043 1.00434 0.99211 1.21476 0.96040 0.96656 0.95706 1.21199 1.00739 0.94326 0.99815 1.19118 0.93872 0.92385 0.95585 1.21054 0.95504 0.96071 1.00298 1.21188 0.92590 0.99049 1.07760 0.91587 0.91749 0.88203 0.91788 0.91503 0.83647 0.80739 0.92485 0.96436 0.91848 0.80689 0.77413 0.80447 0.81287 0.82802 0.85837 0.85018 0.83396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 10.28 71.98 0.74 -1.54 16 2 C 0.04 0.90 5.46 71.98 0.39 1.30 16 3 O -0.33 -9.71 10.14 -93.21 -0.94 -10.65 16 4 C 0.10 3.37 6.69 22.50 0.15 3.52 16 5 C -0.14 -4.95 9.98 22.35 0.22 -4.73 16 6 C -0.14 -5.82 9.02 22.38 0.20 -5.61 16 7 C 0.10 4.65 6.39 38.14 0.24 4.89 16 8 N -0.53 -24.89 2.76 -638.82 -1.76 -26.65 16 9 C 0.23 11.35 4.05 85.63 0.35 11.70 16 10 C -0.55 -28.45 5.74 25.60 0.15 -28.30 16 11 H 0.05 2.95 7.81 -2.92 -0.02 2.93 16 12 C 0.04 1.98 5.46 84.65 0.46 2.45 16 13 N -0.90 -48.70 13.29 21.45 0.28 -48.42 16 14 Si 0.95 41.66 29.54 68.60 2.03 43.69 16 15 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 16 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 18 C 0.56 25.56 7.18 86.66 0.62 26.18 16 19 O -0.55 -24.71 11.13 -4.10 -0.05 -24.76 16 20 C -0.21 -9.11 5.57 -18.60 -0.10 -9.22 16 21 C 0.12 5.32 8.57 84.81 0.73 6.04 16 22 N -0.53 -20.60 10.22 -193.71 -1.98 -22.58 16 23 C 0.18 5.19 11.00 85.31 0.94 6.13 16 24 C -0.14 -3.99 5.74 -21.34 -0.12 -4.12 16 25 C -0.07 -1.23 9.82 22.33 0.22 -1.01 16 26 C -0.12 -2.01 9.94 22.06 0.22 -1.79 16 27 C -0.08 -1.72 9.96 22.10 0.22 -1.50 16 28 C -0.14 -4.49 9.26 22.20 0.21 -4.28 16 29 C 0.00 -0.16 5.90 -19.94 -0.12 -0.27 16 30 C -0.11 -4.59 8.83 22.39 0.20 -4.40 16 31 C -0.19 -6.59 9.03 22.35 0.20 -6.39 16 32 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.06 1.35 7.66 -2.39 -0.02 1.33 16 36 H 0.07 1.37 7.66 -2.39 -0.02 1.35 16 37 H 0.15 4.42 8.06 -2.91 -0.02 4.39 16 38 H 0.18 7.37 4.58 -58.48 -0.27 7.10 16 39 H 0.06 2.98 4.13 -2.39 -0.01 2.97 16 40 H 0.02 0.94 7.63 -2.39 -0.02 0.93 16 41 H 0.27 13.88 8.31 -92.71 -0.77 13.11 16 42 H 0.18 8.84 4.19 -2.91 -0.01 8.83 16 43 H 0.21 3.69 8.06 -2.91 -0.02 3.66 16 44 H 0.18 1.58 8.06 -2.91 -0.02 1.55 16 45 H 0.17 1.34 8.06 -2.91 -0.02 1.31 16 46 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 47 H 0.12 4.33 6.01 -2.91 -0.02 4.32 16 48 H 0.13 6.03 5.79 -2.91 -0.02 6.01 16 49 H 0.15 4.34 6.29 -2.91 -0.02 4.32 16 Total: -1.00 -68.47 397.03 4.45 -64.02 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: 0.75 Total: 36.30 kcal Atomic # 6 Polarization: -17.07 SS G_CDS: 6.12 Total: -10.96 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -3.46 Total: -97.65 kcal Atomic # 8 Polarization: -34.42 SS G_CDS: -0.99 Total: -35.41 kcal Atomic # 14 Polarization: 41.66 SS G_CDS: 2.03 Total: 43.69 kcal Total: -68.47 4.45 -64.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108809154.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.043 kcal (2) G-P(sol) polarization free energy of solvation -68.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds