Wall clock time and date at job start Tue Mar 31 2020 06:38:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38311 * 119.92884 * 2 1 4 4 C 1.38082 * 120.07361 * 180.02562 * 3 2 1 5 5 C 1.38922 * 119.92944 * 359.97438 * 4 3 2 6 6 N 1.39811 * 120.07788 * 180.02562 * 5 4 3 7 7 C 1.46503 * 119.99724 * 352.21402 * 6 5 4 8 8 C 1.50705 * 109.46752 * 267.08404 * 7 6 5 9 9 H 1.08001 * 120.00324 * 359.97438 * 8 7 6 10 10 C 1.37876 * 120.00015 * 180.02562 * 8 7 6 11 11 N 1.31522 * 119.99818 * 359.97438 * 10 8 7 12 12 Si 1.86803 * 120.00240 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.47194 * 59.99521 * 12 10 8 14 14 H 1.48494 * 109.47024 * 179.97438 * 12 10 8 15 15 H 1.48497 * 109.46778 * 299.99241 * 12 10 8 16 16 C 1.34774 * 120.00307 * 172.20917 * 6 5 4 17 17 O 1.21598 * 120.00060 * 353.65418 * 16 6 5 18 18 C 1.47482 * 120.00125 * 173.92168 * 16 6 5 19 19 C 1.36642 * 126.83570 * 173.66838 * 18 16 6 20 20 C 1.42177 * 103.79286 * 179.91387 * 19 18 16 21 21 C 1.48457 * 126.84024 * 180.13051 * 20 19 18 22 22 C 1.39315 * 120.11906 * 359.96976 * 21 20 19 23 23 C 1.38019 * 119.88135 * 179.77076 * 22 21 20 24 24 C 1.38321 * 120.11760 * 0.51314 * 23 22 21 25 25 C 1.38323 * 120.23866 * 359.74128 * 24 23 22 26 26 C 1.38025 * 120.11641 * 0.02562 * 25 24 23 27 27 N 1.30936 * 106.31802 * 0.35781 * 20 19 18 28 28 O 1.20864 * 111.80930 * 359.76812 * 27 20 19 29 29 C 1.38877 * 119.85023 * 0.27853 * 5 4 3 30 30 C 1.38133 * 119.92794 * 359.44728 * 29 5 4 31 31 C 1.50702 * 119.96472 * 180.27618 * 30 29 5 32 32 H 1.08990 * 109.47209 * 90.00129 * 1 2 3 33 33 H 1.08999 * 109.46978 * 210.00103 * 1 2 3 34 34 H 1.09000 * 109.46812 * 329.99761 * 1 2 3 35 35 H 1.07996 * 119.95943 * 359.97438 * 3 2 1 36 36 H 1.08002 * 120.03887 * 179.97438 * 4 3 2 37 37 H 1.09000 * 109.47357 * 27.07514 * 7 6 5 38 38 H 1.08991 * 109.47407 * 147.08354 * 7 6 5 39 39 H 0.96997 * 119.99618 * 180.02562 * 11 10 8 40 40 H 1.08011 * 128.10194 * 0.02562 * 19 18 16 41 41 H 1.08008 * 120.06186 * 0.03251 * 22 21 20 42 42 H 1.07999 * 119.94407 * 180.25534 * 23 22 21 43 43 H 1.08002 * 119.88261 * 179.72166 * 24 23 22 44 44 H 1.07994 * 119.94055 * 180.02562 * 25 24 23 45 45 H 1.07999 * 120.05740 * 180.02562 * 26 25 24 46 46 H 1.08002 * 120.03968 * 179.72551 * 29 5 4 47 47 H 1.09007 * 109.46669 * 270.28006 * 31 30 29 48 48 H 1.09001 * 109.47152 * 30.27175 * 31 30 29 49 49 H 1.08994 * 109.46799 * 150.27968 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1987 0.0000 4 6 3.5779 1.2022 -0.0005 5 6 4.2741 0.0000 -0.0005 6 7 5.6722 -0.0001 -0.0005 7 6 6.4047 1.2569 -0.1724 8 6 6.7184 1.4598 -1.6324 9 1 6.4040 0.7257 -2.3595 10 6 7.4078 2.5822 -2.0399 11 7 7.7911 3.4760 -1.1545 12 14 7.7973 2.8334 -3.8495 13 1 6.5322 2.8880 -4.6252 14 1 8.5397 4.1076 -4.0238 15 1 8.6292 1.7045 -4.3380 16 6 6.3460 -1.1565 0.1577 17 8 5.7436 -2.1809 0.4153 18 6 7.8146 -1.1785 0.0242 19 6 8.6440 -2.2357 0.2721 20 6 9.9397 -1.7240 -0.0122 21 6 11.2274 -2.4559 0.0875 22 6 11.2448 -3.7875 0.4969 23 6 12.4443 -4.4647 0.5833 24 6 13.6288 -3.8205 0.2746 25 6 13.6178 -2.4970 -0.1273 26 6 12.4234 -1.8119 -0.2217 27 7 9.7714 -0.4771 -0.3748 28 8 8.6055 -0.1588 -0.3606 29 6 3.5781 -1.2018 -0.0059 30 6 2.1968 -1.1983 0.0004 31 6 1.4407 -2.5020 0.0010 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5139 35 1 1.6553 2.1329 -0.0004 36 1 4.1162 2.1385 -0.0010 37 1 5.7940 2.0854 0.1864 38 1 7.3334 1.2170 0.3966 39 1 8.2757 4.2658 -1.4412 40 1 8.3775 -3.2283 0.6044 41 1 10.3208 -4.2902 0.7421 42 1 12.4586 -5.4981 0.8966 43 1 14.5657 -4.3528 0.3479 44 1 14.5454 -1.9990 -0.3675 45 1 12.4158 -0.7786 -0.5360 46 1 4.1162 -2.1382 -0.0103 47 1 1.2582 -2.8165 -1.0267 48 1 2.0286 -3.2627 0.5147 49 1 0.4888 -2.3696 0.5150 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112286568.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:05 Heat of formation + Delta-G solvation = 95.970409 kcal Electronic energy + Delta-G solvation = -33562.241552 eV Core-core repulsion = 29230.238286 eV Total energy + Delta-G solvation = -4332.003266 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.52166 -40.36461 -39.14839 -38.38541 -35.84328 -34.18165 -33.00825 -32.24315 -31.94056 -31.20842 -30.88446 -30.16673 -28.00038 -26.67402 -26.15971 -24.09102 -23.84865 -23.25064 -22.37894 -21.83408 -21.65236 -20.12662 -19.18662 -17.60659 -17.36516 -16.67790 -16.59540 -16.45538 -16.08537 -15.56656 -15.16297 -14.93005 -14.68664 -14.61790 -14.34836 -13.93706 -13.67285 -13.56406 -13.46307 -13.24259 -13.06034 -13.01507 -12.72788 -12.57690 -12.50851 -12.30031 -11.82428 -11.70055 -11.52223 -11.48117 -11.34477 -11.23869 -11.03987 -10.92867 -10.79120 -10.61407 -10.52773 -10.25834 -10.08097 -9.44988 -9.26894 -9.09336 -9.06704 -8.59309 -8.48487 -8.24081 -7.22678 -6.21161 -4.28234 0.86154 1.10458 1.28924 1.87458 1.92257 2.57504 3.00034 3.25908 3.29892 3.32841 3.37249 3.60632 3.81465 4.08760 4.27166 4.35899 4.52769 4.83722 4.90147 4.97878 5.07421 5.14527 5.15849 5.25271 5.27618 5.34273 5.37647 5.44332 5.45290 5.58359 5.66826 5.69081 5.77490 5.87396 5.92587 5.93863 6.01784 6.03386 6.04219 6.13872 6.20841 6.34374 6.38936 6.44523 6.46131 6.68825 6.81702 6.82648 6.87736 7.04929 7.11741 7.17307 7.64275 7.68281 7.86205 7.90505 8.30482 8.56328 8.74688 9.38776 10.86279 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.008684 B = 0.002911 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3223.469455 B = 9615.562099 C =12291.697124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.125 4.125 3 C -0.098 4.098 4 C -0.141 4.141 5 C 0.168 3.832 6 N -0.518 5.518 7 C 0.222 3.778 8 C -0.536 4.536 9 H 0.061 0.939 10 C 0.078 3.922 11 N -0.884 5.884 12 Si 0.894 3.106 13 H -0.275 1.275 14 H -0.284 1.284 15 H -0.275 1.275 16 C 0.600 3.400 17 O -0.520 6.520 18 C -0.063 4.063 19 C -0.159 4.159 20 C 0.024 3.976 21 C -0.008 4.008 22 C -0.099 4.099 23 C -0.120 4.120 24 C -0.117 4.117 25 C -0.120 4.120 26 C -0.094 4.094 27 N -0.338 5.338 28 O 0.194 5.806 29 C -0.164 4.164 30 C -0.075 4.075 31 C -0.111 4.111 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.120 0.880 36 H 0.138 0.862 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.267 0.733 40 H 0.179 0.821 41 H 0.128 0.872 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.130 0.870 46 H 0.170 0.830 47 H 0.065 0.935 48 H 0.064 0.936 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.135 -11.594 4.472 12.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.126 4.126 3 C -0.117 4.117 4 C -0.161 4.161 5 C 0.072 3.928 6 N -0.236 5.236 7 C 0.104 3.896 8 C -0.575 4.575 9 H 0.079 0.921 10 C -0.127 4.127 11 N -0.521 5.521 12 Si 0.721 3.279 13 H -0.200 1.200 14 H -0.210 1.210 15 H -0.201 1.201 16 C 0.389 3.611 17 O -0.400 6.400 18 C -0.129 4.129 19 C -0.181 4.181 20 C -0.130 4.130 21 C -0.009 4.009 22 C -0.118 4.118 23 C -0.138 4.138 24 C -0.136 4.136 25 C -0.138 4.138 26 C -0.113 4.113 27 N -0.029 5.029 28 O 0.111 5.889 29 C -0.184 4.184 30 C -0.075 4.075 31 C -0.167 4.167 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.138 0.862 36 H 0.155 0.845 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.077 0.923 40 H 0.196 0.804 41 H 0.146 0.854 42 H 0.144 0.856 43 H 0.141 0.859 44 H 0.143 0.857 45 H 0.148 0.852 46 H 0.187 0.813 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.634 -10.929 4.255 11.745 hybrid contribution 0.109 -0.140 -0.931 0.948 sum 0.744 -11.069 3.324 11.581 Atomic orbital electron populations 1.20741 0.92014 1.02051 1.01635 1.19633 0.95447 0.92875 1.04614 1.20712 0.93315 0.97119 1.00521 1.21051 0.94102 0.97428 1.03525 1.17878 0.81891 0.94433 0.98556 1.45887 1.04630 1.10070 1.63016 1.19976 0.91986 0.78780 0.98833 1.21158 1.37654 1.07211 0.91441 0.92119 1.24783 0.94747 0.95317 0.97837 1.69887 1.37752 1.10744 1.33753 0.86602 0.78682 0.77668 0.84907 1.20035 1.20984 1.20055 1.16701 0.83153 0.83556 0.77728 1.90521 1.65853 1.33881 1.49732 1.23861 0.94112 0.89260 1.05685 1.22683 0.90079 1.00939 1.04437 1.21881 0.94329 0.91429 1.05348 1.17715 0.89190 0.93068 1.00890 1.21141 0.98734 0.93035 0.98891 1.21046 0.92170 0.99984 1.00645 1.21237 0.98203 0.94926 0.99201 1.21103 0.97793 0.94765 1.00106 1.21298 0.91408 1.00500 0.98118 1.74077 0.98752 1.14770 1.15289 1.85591 1.10138 1.33247 1.59942 1.22182 0.93622 0.99536 1.03024 1.19579 0.93292 0.94464 1.00211 1.20785 0.99595 0.94481 1.01871 0.91897 0.91754 0.92227 0.86248 0.84478 0.92701 0.93050 0.92312 0.80374 0.85412 0.85603 0.85940 0.85660 0.85164 0.81339 0.91627 0.91746 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 9.60 36.01 0.35 -0.87 16 2 C -0.12 -1.87 5.88 -104.58 -0.62 -2.49 16 3 C -0.10 -1.57 9.69 -39.61 -0.38 -1.95 16 4 C -0.14 -2.64 9.28 -39.39 -0.37 -3.01 16 5 C 0.17 3.37 6.48 -83.73 -0.54 2.82 16 6 N -0.52 -11.06 2.68 -115.92 -0.31 -11.37 16 7 C 0.22 5.20 4.41 -5.19 -0.02 5.18 16 8 C -0.54 -13.72 8.02 -34.44 -0.28 -14.00 16 9 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 10 C 0.08 2.03 5.46 -17.82 -0.10 1.93 16 11 N -0.88 -23.90 13.29 55.43 0.74 -23.16 16 12 Si 0.89 20.88 29.54 -169.99 -5.02 15.86 16 13 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 15 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 16 C 0.60 12.34 7.55 -12.50 -0.09 12.24 16 17 O -0.52 -10.52 13.44 5.28 0.07 -10.45 16 18 C -0.06 -1.25 6.77 -36.39 -0.25 -1.50 16 19 C -0.16 -2.66 10.31 -38.65 -0.40 -3.06 16 20 C 0.02 0.42 7.05 -82.53 -0.58 -0.16 16 21 C -0.01 -0.11 5.88 -104.89 -0.62 -0.73 16 22 C -0.10 -1.17 9.60 -39.26 -0.38 -1.55 16 23 C -0.12 -1.19 10.03 -39.63 -0.40 -1.59 16 24 C -0.12 -1.13 10.04 -39.52 -0.40 -1.53 16 25 C -0.12 -1.32 10.03 -39.63 -0.40 -1.72 16 26 C -0.09 -1.30 9.70 -39.26 -0.38 -1.68 16 27 N -0.34 -6.96 11.78 33.39 0.39 -6.56 16 28 O 0.19 4.26 7.18 15.51 0.11 4.37 16 29 C -0.16 -3.05 8.62 -39.38 -0.34 -3.39 16 30 C -0.07 -1.19 5.88 -104.65 -0.62 -1.80 16 31 C -0.11 -1.37 9.60 36.01 0.35 -1.02 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.64 5.94 -51.93 -0.31 0.33 16 34 H 0.06 0.60 8.08 -51.93 -0.42 0.18 16 35 H 0.12 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.14 2.66 5.96 -52.49 -0.31 2.35 16 37 H 0.06 1.31 5.81 -51.93 -0.30 1.01 16 38 H 0.05 1.26 5.87 -51.93 -0.30 0.96 16 39 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.18 2.41 7.57 -52.48 -0.40 2.01 16 41 H 0.13 1.29 7.22 -52.48 -0.38 0.91 16 42 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 43 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 44 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.13 1.89 7.89 -52.49 -0.41 1.48 16 46 H 0.17 3.25 4.74 -55.05 -0.26 2.99 16 47 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 48 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 49 H 0.06 0.68 5.94 -51.93 -0.31 0.37 16 LS Contribution 406.85 15.07 6.13 6.13 Total: -1.00 -28.95 406.85 -10.25 -39.20 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.91 Total: 5.87 kcal Atomic # 6 Polarization: -13.42 SS G_CDS: -6.45 Total: -19.88 kcal Atomic # 7 Polarization: -41.91 SS G_CDS: 0.82 Total: -41.09 kcal Atomic # 8 Polarization: -6.27 SS G_CDS: 0.18 Total: -6.09 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -28.95 -10.25 -39.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112286568.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.168 kcal (2) G-P(sol) polarization free energy of solvation -28.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds