Wall clock time and date at job start Tue Mar 31 2020 06:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38302 * 119.92877 * 2 1 4 4 C 1.38086 * 120.07436 * 180.02562 * 3 2 1 5 5 C 1.38904 * 119.92440 * 0.02562 * 4 3 2 6 6 N 1.39865 * 120.06773 * 180.02562 * 5 4 3 7 7 C 1.46495 * 120.00051 * 352.67475 * 6 5 4 8 8 C 1.50705 * 109.47113 * 263.50135 * 7 6 5 9 9 H 1.07996 * 120.00187 * 0.02562 * 8 7 6 10 10 C 1.37877 * 119.99640 * 180.02562 * 8 7 6 11 11 N 1.31518 * 119.99825 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 120.00334 * 0.02562 * 10 8 7 13 13 H 1.48490 * 109.47289 * 89.99923 * 12 10 8 14 14 H 1.48504 * 109.46734 * 210.00162 * 12 10 8 15 15 H 1.48500 * 109.47010 * 329.99651 * 12 10 8 16 16 C 1.34780 * 119.99792 * 172.68087 * 6 5 4 17 17 O 1.21601 * 120.00109 * 3.34630 * 16 6 5 18 18 C 1.47483 * 119.99612 * 183.34088 * 16 6 5 19 19 C 1.36643 * 125.76367 * 174.63163 * 18 16 6 20 20 N 1.35089 * 106.78691 * 180.16654 * 19 18 16 21 21 C 1.40222 * 126.60913 * 179.88077 * 20 19 18 22 22 C 1.38830 * 120.06465 * 179.70840 * 21 20 19 23 23 C 1.38121 * 119.93554 * 179.97438 * 22 21 20 24 24 C 1.38279 * 120.06125 * 0.02562 * 23 22 21 25 25 C 1.38275 * 120.13618 * 359.97438 * 24 23 22 26 26 C 1.38123 * 120.06625 * 0.02562 * 25 24 23 27 27 N 1.40215 * 106.77479 * 359.62625 * 20 19 18 28 28 N 1.28750 * 108.39030 * 0.23769 * 27 20 19 29 29 C 1.38864 * 119.85855 * 0.26757 * 5 4 3 30 30 C 1.38127 * 119.92684 * 359.45389 * 29 5 4 31 31 C 1.50697 * 119.96610 * 180.24768 * 30 29 5 32 32 H 1.08995 * 109.47199 * 90.00173 * 1 2 3 33 33 H 1.08998 * 109.47150 * 209.99848 * 1 2 3 34 34 H 1.08994 * 109.47569 * 329.99823 * 1 2 3 35 35 H 1.08010 * 119.96165 * 0.02562 * 3 2 1 36 36 H 1.08002 * 120.03536 * 179.97438 * 4 3 2 37 37 H 1.09003 * 109.47623 * 23.50294 * 7 6 5 38 38 H 1.09005 * 109.47048 * 143.50241 * 7 6 5 39 39 H 0.96995 * 120.00176 * 179.97438 * 11 10 8 40 40 H 1.07997 * 126.60352 * 0.02562 * 19 18 16 41 41 H 1.07996 * 120.02984 * 359.96685 * 22 21 20 42 42 H 1.07997 * 119.97138 * 180.02562 * 23 22 21 43 43 H 1.08006 * 119.92763 * 179.72290 * 24 23 22 44 44 H 1.08004 * 119.96725 * 179.97438 * 25 24 23 45 45 H 1.07992 * 120.03502 * 179.97438 * 26 25 24 46 46 H 1.08003 * 120.03474 * 179.73041 * 29 5 4 47 47 H 1.08996 * 109.47586 * 270.30283 * 31 30 29 48 48 H 1.09002 * 109.46927 * 30.30389 * 31 30 29 49 49 H 1.08999 * 109.46926 * 150.29854 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1970 1.1986 0.0000 4 6 3.5779 1.2021 -0.0005 5 6 4.2739 0.0000 -0.0016 6 7 5.6725 0.0001 -0.0016 7 6 6.4049 1.2586 -0.1622 8 6 6.7954 1.4316 -1.6075 9 1 6.5246 0.6796 -2.3338 10 6 7.4983 2.5501 -2.0025 11 7 7.8395 2.7009 -3.2637 12 14 7.9673 3.8505 -0.7462 13 1 9.2959 3.5245 -0.1687 14 1 8.0272 5.1788 -1.4076 15 1 6.9512 3.8820 0.3364 16 6 6.3464 -1.1578 0.1461 17 8 5.7400 -2.2093 0.2182 18 6 7.8194 -1.1494 0.2200 19 6 8.6126 -2.2333 0.4709 20 7 9.8900 -1.7940 0.4551 21 6 11.0420 -2.5647 0.6674 22 6 12.2957 -1.9708 0.6141 23 6 13.4287 -2.7324 0.8242 24 6 13.3150 -4.0852 1.0869 25 6 12.0677 -4.6796 1.1406 26 6 10.9311 -3.9232 0.9314 27 7 9.8420 -0.4200 0.1797 28 7 8.6087 -0.0751 0.0474 29 6 3.5781 -1.2017 -0.0078 30 6 2.1968 -1.1983 -0.0014 31 6 1.4408 -2.5019 -0.0024 32 1 -0.3633 0.0000 -1.0276 33 1 -0.3633 -0.8900 0.5138 34 1 -0.3634 0.8899 0.5138 35 1 1.6552 2.1329 0.0004 36 1 4.1161 2.1385 -0.0010 37 1 5.7705 2.0900 0.1448 38 1 7.3021 1.2383 0.4566 39 1 8.3336 3.4879 -3.5416 40 1 8.2819 -3.2457 0.6498 41 1 12.3850 -0.9144 0.4085 42 1 14.4042 -2.2709 0.7833 43 1 14.2026 -4.6796 1.2464 44 1 11.9821 -5.7366 1.3456 45 1 9.9572 -4.3880 0.9731 46 1 4.1163 -2.1380 -0.0130 47 1 1.2585 -2.8155 -1.0303 48 1 2.0285 -3.2631 0.5108 49 1 0.4887 -2.3702 0.5116 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112286770.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:44:15 Heat of formation + Delta-G solvation = 155.765913 kcal Electronic energy + Delta-G solvation = -33578.845009 eV Core-core repulsion = 29281.727422 eV Total energy + Delta-G solvation = -4297.117587 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.164 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.20633 -40.23959 -39.38167 -38.22285 -35.73415 -34.55882 -32.73840 -32.03789 -31.71349 -31.42763 -30.58479 -29.69593 -28.33542 -26.72392 -26.08948 -24.30715 -23.91701 -22.90251 -22.22767 -21.77537 -21.26773 -20.30465 -19.22361 -18.16105 -17.05533 -16.81905 -16.52388 -16.14237 -15.88885 -15.35690 -15.27028 -15.01036 -14.67620 -14.62856 -14.20464 -14.14749 -13.90685 -13.81125 -13.39152 -13.20731 -13.15262 -12.82245 -12.56183 -12.42259 -12.32259 -12.16313 -12.09206 -11.91856 -11.76380 -11.65471 -11.35092 -11.18614 -11.10572 -10.95393 -10.76721 -10.48893 -10.34942 -10.07737 -9.62333 -9.38613 -9.33954 -9.05141 -8.93878 -8.62024 -8.50740 -8.19497 -7.12542 -6.06866 -4.05181 0.39227 0.96675 1.55226 1.84489 1.94801 2.08249 2.29666 3.31113 3.35109 3.39534 3.43004 3.45240 3.63721 4.26544 4.36235 4.37797 4.42504 4.53459 4.71056 4.75090 4.91096 4.99230 5.10449 5.19426 5.23382 5.25393 5.30347 5.37209 5.41569 5.48886 5.63364 5.67837 5.72347 5.80382 5.91830 5.95064 5.96621 6.05373 6.07954 6.09349 6.16338 6.20244 6.26532 6.33279 6.47171 6.69982 6.76794 6.88636 6.89249 6.96476 7.14989 7.21736 7.53238 7.75170 7.91003 8.23483 8.45455 8.60833 8.95007 9.52582 11.06259 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.008691 B = 0.002988 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3221.037296 B = 9370.076867 C =12147.821506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.127 4.127 3 C -0.097 4.097 4 C -0.148 4.148 5 C 0.169 3.831 6 N -0.512 5.512 7 C 0.190 3.810 8 C -0.516 4.516 9 H 0.073 0.927 10 C 0.086 3.914 11 N -0.894 5.894 12 Si 0.868 3.132 13 H -0.268 1.268 14 H -0.287 1.287 15 H -0.266 1.266 16 C 0.607 3.393 17 O -0.539 6.539 18 C -0.080 4.080 19 C 0.084 3.916 20 N -0.324 5.324 21 C 0.146 3.854 22 C -0.107 4.107 23 C -0.098 4.098 24 C -0.123 4.123 25 C -0.097 4.097 26 C -0.130 4.130 27 N -0.067 5.067 28 N -0.136 5.136 29 C -0.170 4.170 30 C -0.075 4.075 31 C -0.110 4.110 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.118 0.882 36 H 0.132 0.868 37 H 0.040 0.960 38 H 0.066 0.934 39 H 0.264 0.736 40 H 0.203 0.797 41 H 0.143 0.857 42 H 0.134 0.866 43 H 0.129 0.871 44 H 0.134 0.866 45 H 0.134 0.866 46 H 0.180 0.820 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.136 -13.370 10.992 17.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.128 4.128 3 C -0.116 4.116 4 C -0.168 4.168 5 C 0.074 3.926 6 N -0.229 5.229 7 C 0.069 3.931 8 C -0.555 4.555 9 H 0.091 0.909 10 C -0.117 4.117 11 N -0.532 5.532 12 Si 0.694 3.306 13 H -0.193 1.193 14 H -0.213 1.213 15 H -0.191 1.191 16 C 0.396 3.604 17 O -0.419 6.419 18 C -0.217 4.217 19 C -0.069 4.069 20 N -0.102 5.102 21 C 0.054 3.946 22 C -0.127 4.127 23 C -0.116 4.116 24 C -0.141 4.141 25 C -0.115 4.115 26 C -0.151 4.151 27 N -0.045 5.045 28 N -0.009 5.009 29 C -0.190 4.190 30 C -0.075 4.075 31 C -0.167 4.167 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.136 0.864 36 H 0.150 0.850 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.220 0.780 41 H 0.161 0.839 42 H 0.152 0.848 43 H 0.147 0.853 44 H 0.152 0.848 45 H 0.152 0.848 46 H 0.196 0.804 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.793 -12.448 10.686 16.642 hybrid contribution -0.016 0.172 0.343 0.384 sum 2.776 -12.276 11.029 16.734 Atomic orbital electron populations 1.20733 0.92066 1.01948 1.01625 1.19618 0.95402 0.92909 1.04917 1.20678 0.93247 0.97112 1.00579 1.20989 0.94173 0.97267 1.04381 1.17953 0.82055 0.94436 0.98175 1.45462 1.04171 1.09657 1.63608 1.20550 0.92512 0.79855 1.00141 1.21005 1.35950 1.07477 0.91042 0.90879 1.24665 0.94633 0.97497 0.94868 1.69884 1.38989 1.28787 1.15518 0.86979 0.80254 0.81285 0.82050 1.19295 1.21259 1.19132 1.16778 0.84192 0.83193 0.76198 1.90373 1.66921 1.31706 1.52892 1.21224 0.95603 0.90003 1.14861 1.23179 0.83119 1.01249 0.99394 1.47780 1.04553 1.09805 1.48018 1.17662 0.84426 0.89986 1.02525 1.21044 0.90012 1.01707 0.99954 1.21111 0.98263 0.93905 0.98354 1.21299 0.97829 0.95092 0.99924 1.21001 0.91573 1.00038 0.98934 1.20972 1.00533 0.91200 1.02424 1.82238 1.14310 0.86958 1.21032 1.75233 0.96181 1.23067 1.06466 1.22527 0.93603 1.00103 1.02727 1.19621 0.93447 0.94387 1.00069 1.20775 0.99497 0.94488 1.01892 0.91911 0.91794 0.92317 0.86354 0.85007 0.94183 0.91680 0.92573 0.78017 0.83940 0.84771 0.85269 0.84789 0.84799 0.80387 0.91597 0.91791 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.60 36.01 0.35 -0.91 16 2 C -0.13 -1.99 5.88 -104.59 -0.62 -2.61 16 3 C -0.10 -1.62 9.69 -39.61 -0.38 -2.01 16 4 C -0.15 -2.88 9.29 -39.39 -0.37 -3.25 16 5 C 0.17 3.55 6.49 -83.71 -0.54 3.00 16 6 N -0.51 -11.42 2.70 -115.91 -0.31 -11.73 16 7 C 0.19 4.53 3.57 -5.19 -0.02 4.51 16 8 C -0.52 -14.37 8.88 -34.44 -0.31 -14.68 16 9 H 0.07 2.31 8.06 -52.49 -0.42 1.88 16 10 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 11 N -0.89 -27.18 13.96 55.43 0.77 -26.41 16 12 Si 0.87 21.27 27.47 -169.99 -4.67 16.60 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 15 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 16 C 0.61 12.83 7.56 -12.49 -0.09 12.74 16 17 O -0.54 -11.01 13.27 5.28 0.07 -10.94 16 18 C -0.08 -1.60 6.67 -83.54 -0.56 -2.16 16 19 C 0.08 1.30 10.61 -16.69 -0.18 1.13 16 20 N -0.32 -5.15 3.82 -10.42 -0.04 -5.19 16 21 C 0.15 1.84 6.70 -83.58 -0.56 1.28 16 22 C -0.11 -1.24 9.68 -39.41 -0.38 -1.62 16 23 C -0.10 -0.83 10.04 -39.61 -0.40 -1.23 16 24 C -0.12 -0.89 10.04 -39.55 -0.40 -1.28 16 25 C -0.10 -0.72 10.04 -39.61 -0.40 -1.12 16 26 C -0.13 -1.24 9.47 -39.40 -0.37 -1.62 16 27 N -0.07 -1.33 13.12 60.35 0.79 -0.54 16 28 N -0.14 -3.00 8.05 32.85 0.26 -2.73 16 29 C -0.17 -3.29 8.69 -39.39 -0.34 -3.63 16 30 C -0.07 -1.23 5.88 -104.65 -0.62 -1.84 16 31 C -0.11 -1.40 9.60 36.00 0.35 -1.06 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.66 5.94 -51.93 -0.31 0.35 16 34 H 0.06 0.61 8.08 -51.93 -0.42 0.20 16 35 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 36 H 0.13 2.61 5.90 -52.49 -0.31 2.30 16 37 H 0.04 0.94 4.73 -51.93 -0.25 0.69 16 38 H 0.07 1.57 4.75 -51.93 -0.25 1.32 16 39 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 40 H 0.20 2.28 7.13 -52.49 -0.37 1.91 16 41 H 0.14 1.76 7.73 -52.49 -0.41 1.35 16 42 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 43 H 0.13 0.60 8.06 -52.48 -0.42 0.17 16 44 H 0.13 0.64 8.06 -52.48 -0.42 0.22 16 45 H 0.13 1.03 6.81 -52.49 -0.36 0.67 16 46 H 0.18 3.55 4.55 -56.13 -0.26 3.29 16 47 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 48 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 49 H 0.06 0.69 5.94 -51.93 -0.31 0.38 16 LS Contribution 401.51 15.07 6.05 6.05 Total: -1.00 -33.97 401.51 -8.78 -42.75 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.78 Total: 6.11 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -5.93 Total: -13.98 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 1.48 Total: -46.59 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.07 Total: -10.94 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.97 -8.78 -42.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112286770.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 198.514 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds