Wall clock time and date at job start Tue Mar 31 2020 06:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47232 * 2 1 4 4 C 1.35965 * 117.00331 * 180.02562 * 3 2 1 5 5 C 1.38726 * 119.98749 * 179.97438 * 4 3 2 6 6 C 1.38076 * 120.02096 * 180.02562 * 5 4 3 7 7 C 1.38879 * 119.98322 * 359.97438 * 6 5 4 8 8 N 1.40012 * 120.01992 * 179.97438 * 7 6 5 9 9 C 1.46499 * 119.99967 * 172.44299 * 8 7 6 10 10 C 1.50699 * 109.47283 * 275.96713 * 9 8 7 11 11 H 1.08005 * 120.00145 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99856 * 179.97438 * 10 9 8 13 13 N 1.31507 * 120.00364 * 0.02562 * 12 10 9 14 14 Si 1.86809 * 119.99712 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47064 * 60.00363 * 14 12 10 16 16 H 1.48495 * 109.46828 * 179.97438 * 14 12 10 17 17 H 1.48496 * 109.46996 * 300.00120 * 14 12 10 18 18 C 1.34780 * 119.99913 * 352.45372 * 8 7 6 19 19 O 1.21606 * 120.00270 * 4.03433 * 18 8 7 20 20 C 1.47518 * 119.99874 * 183.76722 * 18 8 7 21 21 C 1.38710 * 120.38804 * 306.21893 * 20 18 8 22 22 C 1.38963 * 120.53689 * 179.74880 * 21 20 18 23 23 C 1.36220 * 121.23773 * 0.52816 * 22 21 20 24 24 C 1.40707 * 120.20116 * 359.75367 * 23 22 21 25 25 N 1.33689 * 120.93490 * 179.97438 * 24 23 22 26 26 C 1.31058 * 121.34202 * 180.02562 * 25 24 23 27 27 C 1.39336 * 121.70689 * 359.95888 * 26 25 24 28 28 C 1.36676 * 119.87220 * 0.02562 * 27 26 25 29 29 C 1.40470 * 118.16561 * 0.02562 * 28 27 26 30 30 C 1.38873 * 119.96025 * 0.27824 * 7 6 5 31 31 C 1.38082 * 119.98660 * 359.44058 * 30 7 6 32 32 H 1.08998 * 109.47159 * 60.00035 * 1 2 3 33 33 H 1.09000 * 109.47199 * 180.02562 * 1 2 3 34 34 H 1.09008 * 109.46816 * 300.00045 * 1 2 3 35 35 H 1.08995 * 109.47040 * 240.00029 * 2 1 3 36 36 H 1.09007 * 109.47041 * 119.99767 * 2 1 3 37 37 H 1.08001 * 119.98983 * 0.02562 * 5 4 3 38 38 H 1.07995 * 120.01051 * 179.97438 * 6 5 4 39 39 H 1.08993 * 109.47096 * 35.97285 * 9 8 7 40 40 H 1.09007 * 109.46858 * 155.97021 * 9 8 7 41 41 H 0.97003 * 120.00305 * 179.97438 * 13 12 10 42 42 H 1.07999 * 119.73335 * 0.02562 * 21 20 18 43 43 H 1.07996 * 119.38318 * 180.26412 * 22 21 20 44 44 H 1.07997 * 119.90009 * 179.72208 * 23 22 21 45 45 H 1.08008 * 119.14889 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.06228 * 179.97438 * 27 26 25 47 47 H 1.07991 * 120.92016 * 179.97438 * 28 27 26 48 48 H 1.08005 * 120.00563 * 179.72359 * 30 7 6 49 49 H 1.07997 * 119.99300 * 180.27717 * 31 30 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3543 1.5255 -0.0005 5 6 3.8842 2.8075 -0.0011 6 6 5.2529 2.9893 -0.0022 7 6 6.0993 1.8882 -0.0022 8 7 7.4873 2.0716 -0.0038 9 6 8.3785 0.9208 0.1630 10 6 8.5440 0.6223 1.6309 11 1 8.0358 1.2289 2.3660 12 6 9.3433 -0.4258 2.0353 13 7 9.9617 -1.1647 1.1403 14 14 9.5479 -0.7963 3.8548 15 1 8.2226 -1.1058 4.4490 16 1 10.4503 -1.9634 4.0238 17 1 10.1329 0.3854 4.5378 18 6 8.0037 3.3069 -0.1587 19 8 7.2652 4.2709 -0.2234 20 6 9.4649 3.4902 -0.2438 21 6 10.2946 2.9821 0.7449 22 6 11.6719 3.1485 0.6652 23 6 12.2435 3.8198 -0.3732 24 6 11.4406 4.3575 -1.3961 25 7 11.9860 5.0194 -2.4216 26 6 11.2458 5.5238 -3.3783 27 6 9.8583 5.3956 -3.3756 28 6 9.2382 4.7298 -2.3557 29 6 10.0366 4.1923 -1.3326 30 6 5.5680 0.6051 -0.0069 31 6 4.1990 0.4249 0.0000 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5139 0.8901 35 1 1.8933 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8901 37 1 3.2259 3.6637 -0.0007 38 1 5.6653 3.9874 -0.0031 39 1 7.9493 0.0533 -0.3381 40 1 9.3511 1.1482 -0.2734 41 1 10.5243 -1.9018 1.4248 42 1 9.8670 2.4490 1.5812 43 1 12.3007 2.7415 1.4432 44 1 13.3160 3.9403 -0.4112 45 1 11.7236 6.0524 -4.1900 46 1 9.2740 5.8222 -4.1775 47 1 8.1639 4.6208 -2.3364 48 1 6.2256 -0.2517 -0.0114 49 1 3.7858 -0.5728 0.0009 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000114686853.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:34 Heat of formation + Delta-G solvation = 30.030610 kcal Electronic energy + Delta-G solvation = -33950.834755 eV Core-core repulsion = 29615.972125 eV Total energy + Delta-G solvation = -4334.862630 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 376.157 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.98786 -40.09058 -39.21815 -37.11507 -36.58288 -35.11128 -33.25291 -32.80559 -31.74037 -30.54933 -30.34281 -30.15178 -28.33110 -27.33615 -24.38025 -24.09711 -23.37125 -23.35653 -23.19231 -21.45954 -21.22445 -19.31397 -18.01545 -17.98082 -17.05819 -16.86832 -16.83208 -16.39666 -15.97763 -15.92452 -15.19885 -14.69319 -14.60611 -14.43725 -14.20446 -14.08409 -13.90806 -13.65422 -13.21995 -13.21637 -13.00786 -12.94479 -12.82754 -12.59219 -12.45458 -12.15778 -11.95867 -11.88787 -11.66828 -11.50951 -11.30425 -11.20142 -10.98198 -10.80399 -10.78328 -10.52793 -10.38284 -10.29192 -10.05392 -9.52858 -9.00647 -8.84394 -8.72600 -8.54930 -8.53074 -7.94226 -7.01843 -6.36062 -4.46231 0.47444 1.05241 1.73297 1.82514 2.10691 2.99671 3.13059 3.19551 3.22280 3.26093 3.39794 3.56906 4.16264 4.30294 4.36526 4.43308 4.73434 4.88049 4.89937 4.93788 4.94493 5.03526 5.14288 5.17634 5.18751 5.29452 5.36038 5.37935 5.45787 5.59127 5.70344 5.71896 5.75165 5.87959 5.94374 5.99781 6.05580 6.07708 6.18225 6.29646 6.31725 6.50921 6.66016 6.67108 6.70072 6.71421 6.75660 6.82789 7.01406 7.05746 7.08471 7.53874 7.56080 7.78915 7.79209 7.97656 8.03371 8.52371 8.65666 9.20916 10.68877 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.007470 B = 0.003409 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3747.668103 B = 8210.723998 C =11325.006534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.323 6.323 4 C 0.090 3.910 5 C -0.136 4.136 6 C -0.139 4.139 7 C 0.136 3.864 8 N -0.522 5.522 9 C 0.222 3.778 10 C -0.545 4.545 11 H 0.065 0.935 12 C 0.074 3.926 13 N -0.881 5.881 14 Si 0.894 3.106 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.272 1.272 18 C 0.563 3.437 19 O -0.538 6.538 20 C -0.110 4.110 21 C -0.048 4.048 22 C -0.098 4.098 23 C -0.082 4.082 24 C 0.116 3.884 25 N -0.474 5.474 26 C 0.121 3.879 27 C -0.180 4.180 28 C -0.051 4.051 29 C -0.064 4.064 30 C -0.101 4.101 31 C -0.188 4.188 32 H 0.064 0.936 33 H 0.074 0.926 34 H 0.064 0.936 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.124 0.876 38 H 0.186 0.814 39 H 0.044 0.956 40 H 0.053 0.947 41 H 0.269 0.731 42 H 0.166 0.834 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.156 0.844 46 H 0.134 0.866 47 H 0.141 0.859 48 H 0.139 0.861 49 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.263 5.056 -5.270 9.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.021 4.021 3 O -0.237 6.237 4 C 0.045 3.955 5 C -0.156 4.156 6 C -0.158 4.158 7 C 0.041 3.959 8 N -0.240 5.240 9 C 0.104 3.896 10 C -0.583 4.583 11 H 0.083 0.917 12 C -0.132 4.132 13 N -0.517 5.517 14 Si 0.721 3.279 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.197 1.197 18 C 0.354 3.646 19 O -0.420 6.420 20 C -0.114 4.114 21 C -0.066 4.066 22 C -0.118 4.118 23 C -0.101 4.101 24 C -0.005 4.005 25 N -0.181 5.181 26 C -0.052 4.052 27 C -0.200 4.200 28 C -0.077 4.077 29 C -0.066 4.066 30 C -0.121 4.121 31 C -0.208 4.208 32 H 0.083 0.917 33 H 0.093 0.907 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.142 0.858 38 H 0.202 0.798 39 H 0.062 0.938 40 H 0.071 0.929 41 H 0.079 0.921 42 H 0.183 0.817 43 H 0.153 0.847 44 H 0.152 0.848 45 H 0.173 0.827 46 H 0.152 0.848 47 H 0.159 0.841 48 H 0.157 0.843 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.635 5.520 -5.256 8.921 hybrid contribution -0.662 -1.048 1.021 1.606 sum -5.298 4.472 -4.235 8.124 Atomic orbital electron populations 1.21759 0.93248 1.02492 1.03248 1.22678 0.95362 0.82766 1.01280 1.86019 1.19662 1.28457 1.89596 1.18982 0.81667 0.94380 1.00500 1.20356 0.94908 0.94163 1.06130 1.22643 0.91544 1.02071 0.99509 1.17903 0.82757 0.93902 1.01355 1.45870 1.04943 1.09282 1.63943 1.19858 0.89219 0.82356 0.98207 1.21293 1.30179 1.15654 0.91213 0.91682 1.24895 0.94911 0.95259 0.98086 1.69906 1.29530 1.18610 1.33669 0.86593 0.78458 0.78230 0.84588 1.19937 1.20959 1.19748 1.18252 0.87699 0.82505 0.76156 1.90345 1.59156 1.40533 1.51956 1.19634 0.92896 1.02000 0.96865 1.22232 0.93102 0.92319 0.98976 1.20932 0.95054 0.97573 0.98266 1.20908 0.99909 0.96800 0.92460 1.18714 0.89808 0.97625 0.94342 1.67988 1.39525 1.09002 1.01627 1.22847 0.90862 0.95535 0.96002 1.21850 0.96197 1.01869 1.00051 1.21600 1.00873 0.93366 0.91899 1.18542 0.93995 0.98776 0.95325 1.20868 0.94492 0.96455 1.00309 1.20941 0.93585 0.97593 1.08638 0.91735 0.90695 0.91705 0.92347 0.92258 0.85771 0.79793 0.93794 0.92867 0.92104 0.81663 0.84700 0.84789 0.82704 0.84765 0.84092 0.84312 0.85862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.05 0.62 5.46 37.16 0.20 0.82 16 3 O -0.32 -4.84 10.14 -19.63 -0.20 -5.04 16 4 C 0.09 1.50 6.69 -39.22 -0.26 1.23 16 5 C -0.14 -2.33 9.98 -39.46 -0.39 -2.73 16 6 C -0.14 -2.62 9.04 -39.40 -0.36 -2.97 16 7 C 0.14 2.73 6.46 -83.65 -0.54 2.19 16 8 N -0.52 -10.87 2.69 -115.86 -0.31 -11.19 16 9 C 0.22 4.97 4.17 -5.19 -0.02 4.95 16 10 C -0.55 -12.91 6.99 -34.44 -0.24 -13.15 16 11 H 0.07 1.60 7.81 -52.48 -0.41 1.19 16 12 C 0.07 1.77 5.46 -17.82 -0.10 1.68 16 13 N -0.88 -22.27 13.29 55.43 0.74 -21.53 16 14 Si 0.89 19.09 29.54 -169.99 -5.02 14.07 16 15 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 16 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 17 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 18 C 0.56 11.40 6.43 -12.48 -0.08 11.32 16 19 O -0.54 -11.08 12.11 5.27 0.06 -11.01 16 20 C -0.11 -2.10 4.74 -104.66 -0.50 -2.60 16 21 C -0.05 -0.89 7.68 -39.14 -0.30 -1.19 16 22 C -0.10 -1.57 9.92 -40.04 -0.40 -1.96 16 23 C -0.08 -1.27 9.96 -39.38 -0.39 -1.66 16 24 C 0.12 1.97 6.60 -84.88 -0.56 1.41 16 25 N -0.47 -7.43 10.34 -10.99 -0.11 -7.55 16 26 C 0.12 1.55 11.15 -17.47 -0.19 1.36 16 27 C -0.18 -2.31 10.03 -39.74 -0.40 -2.71 16 28 C -0.05 -0.82 9.29 -39.31 -0.37 -1.18 16 29 C -0.06 -1.14 5.76 -106.53 -0.61 -1.75 16 30 C -0.10 -1.91 9.26 -39.40 -0.36 -2.28 16 31 C -0.19 -3.14 9.03 -39.46 -0.36 -3.50 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 35 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 36 H 0.06 0.65 7.66 -51.92 -0.40 0.25 16 37 H 0.12 1.88 8.06 -52.49 -0.42 1.45 16 38 H 0.19 3.60 4.54 -56.18 -0.26 3.35 16 39 H 0.04 1.03 6.24 -51.93 -0.32 0.71 16 40 H 0.05 1.24 5.70 -51.93 -0.30 0.94 16 41 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 42 H 0.17 3.32 5.39 -52.49 -0.28 3.04 16 43 H 0.14 1.83 8.06 -52.49 -0.42 1.41 16 44 H 0.13 1.75 8.06 -52.49 -0.42 1.33 16 45 H 0.16 1.40 8.06 -52.48 -0.42 0.98 16 46 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 47 H 0.14 2.28 6.48 -52.49 -0.34 1.94 16 48 H 0.14 2.73 6.13 -52.48 -0.32 2.41 16 49 H 0.12 1.75 6.29 -52.49 -0.33 1.42 16 LS Contribution 400.74 15.07 6.04 6.04 Total: -1.00 -27.83 400.74 -10.53 -38.36 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -5.87 Total: 11.51 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -5.85 Total: -13.65 kcal Atomic # 7 Polarization: -40.58 SS G_CDS: 0.31 Total: -40.27 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: -0.14 Total: -16.06 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -5.02 Total: 14.07 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -27.83 -10.53 -38.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000114686853.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.392 kcal (2) G-P(sol) polarization free energy of solvation -27.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds