Wall clock time and date at job start Tue Mar 31 2020 06:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.46971 * 2 1 4 4 C 1.50704 * 109.46957 * 120.00241 * 2 1 3 5 5 H 1.07997 * 119.99831 * 119.99828 * 4 2 1 6 6 C 1.37881 * 119.99681 * 299.71984 * 4 2 1 7 7 N 1.31507 * 119.99985 * 0.28056 * 6 4 2 8 8 Si 1.86801 * 119.99686 * 180.27635 * 6 4 2 9 9 H 1.48495 * 109.47211 * 0.02562 * 8 6 4 10 10 H 1.48498 * 109.46889 * 120.00136 * 8 6 4 11 11 H 1.48495 * 109.47060 * 240.00153 * 8 6 4 12 12 S 1.81401 * 109.46747 * 239.99801 * 2 1 3 13 13 C 1.76200 * 102.99722 * 68.57899 * 12 2 1 14 14 C 1.38774 * 120.10831 * 5.32394 * 13 12 2 15 15 C 1.38200 * 119.99360 * 179.97438 * 14 13 12 16 16 C 1.38291 * 120.19259 * 359.97438 * 15 14 13 17 17 C 1.38263 * 120.20846 * 0.02562 * 16 15 14 18 18 C 1.38631 * 120.01000 * 359.70287 * 17 16 15 19 19 N 1.40193 * 120.10217 * 180.27649 * 18 17 16 20 20 C 1.34773 * 119.99960 * 328.51961 * 19 18 17 21 21 O 1.21594 * 119.99884 * 4.38093 * 20 19 18 22 22 N 1.34775 * 120.00464 * 184.38663 * 20 19 18 23 23 C 1.47123 * 121.04050 * 5.37863 * 22 20 19 24 24 C 1.52802 * 108.94289 * 232.14817 * 23 22 20 25 25 O 1.43091 * 109.41859 * 306.15527 * 24 23 22 26 26 C 1.42590 * 113.96008 * 59.98066 * 25 24 23 27 27 C 1.53372 * 113.66495 * 72.57575 * 26 25 24 28 28 C 1.53860 * 86.95946 * 89.64810 * 27 26 25 29 29 C 1.53349 * 113.71056 * 170.64944 * 26 25 24 30 30 C 1.47322 * 121.04736 * 185.67143 * 22 20 19 31 31 H 1.09000 * 109.47228 * 66.27651 * 1 2 3 32 32 H 1.09000 * 109.47207 * 186.28067 * 1 2 3 33 33 H 1.09007 * 109.47094 * 306.27663 * 1 2 3 34 34 H 0.96999 * 120.00087 * 179.97438 * 7 6 4 35 35 H 1.08003 * 120.00202 * 359.95518 * 14 13 12 36 36 H 1.07995 * 119.90662 * 179.97438 * 15 14 13 37 37 H 1.08004 * 119.90096 * 179.97438 * 16 15 14 38 38 H 1.08007 * 119.99420 * 179.97438 * 17 16 15 39 39 H 0.96998 * 120.00178 * 148.51143 * 19 18 17 40 40 H 1.08998 * 109.60304 * 351.97161 * 23 22 20 41 41 H 1.09005 * 109.59268 * 112.43462 * 23 22 20 42 42 H 1.08999 * 109.56605 * 186.10736 * 24 23 22 43 43 H 1.09006 * 109.37086 * 66.08609 * 24 23 22 44 44 H 1.09006 * 113.63380 * 204.16254 * 27 26 25 45 45 H 1.09001 * 113.63894 * 335.13194 * 27 26 25 46 46 H 1.09002 * 113.59809 * 270.56404 * 28 27 26 47 47 H 1.08997 * 113.60166 * 139.69083 * 28 27 26 48 48 H 1.08993 * 113.62991 * 24.91624 * 29 26 25 49 49 H 1.08998 * 113.62618 * 155.87919 * 29 26 25 50 50 H 1.09008 * 109.73880 * 251.09759 * 30 22 20 51 51 H 1.08997 * 109.75160 * 11.81700 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.7039 -0.2360 2.4828 7 7 0.9479 0.8332 2.6034 8 14 2.3329 -1.1122 4.0079 9 1 3.1573 -2.2793 3.6038 10 1 3.1607 -0.1763 4.8104 11 1 1.1813 -1.5771 4.8220 12 16 2.1346 -0.8552 -1.4811 13 6 1.6755 0.2376 -2.7849 14 6 1.1111 1.4713 -2.4928 15 6 0.7524 2.3268 -3.5172 16 6 0.9545 1.9577 -4.8346 17 6 1.5162 0.7304 -5.1348 18 6 1.8844 -0.1320 -4.1138 19 7 2.4593 -1.3744 -4.4159 20 6 2.1125 -2.0203 -5.5467 21 8 1.3623 -1.4907 -6.3437 22 7 2.5971 -3.2533 -5.7943 23 6 3.4106 -3.9635 -4.7951 24 6 4.7076 -4.4317 -5.4535 25 8 4.3985 -5.1935 -6.6247 26 6 3.6627 -4.4699 -7.6086 27 6 4.4961 -3.4168 -8.3494 28 6 4.8430 -4.5222 -9.3618 29 6 3.5301 -5.2083 -8.9461 30 6 2.3341 -3.9298 -7.0764 31 1 -0.3634 0.4135 -0.9408 32 1 -0.3633 -1.0215 0.1124 33 1 -0.3634 0.6081 0.8285 34 1 0.7166 1.1667 3.4844 35 1 0.9520 1.7627 -1.4651 36 1 0.3129 3.2864 -3.2884 37 1 0.6720 2.6297 -5.6314 38 1 1.6721 0.4455 -6.1649 39 1 3.1069 -1.7691 -3.8111 40 1 3.6434 -3.2918 -3.9688 41 1 2.8602 -4.8276 -4.4229 42 1 5.2689 -5.0515 -4.7542 43 1 5.3057 -3.5639 -5.7315 44 1 3.9011 -2.6075 -8.7729 45 1 5.3548 -3.0598 -7.7808 46 1 5.7349 -5.0908 -9.0984 47 1 4.8481 -4.1802 -10.3967 48 1 3.6123 -6.2915 -8.8572 49 1 2.6680 -4.8947 -9.5346 50 1 1.6371 -4.7535 -6.9219 51 1 1.9137 -3.2194 -7.7882 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161577528.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:22 Heat of formation + Delta-G solvation = -7.039830 kcal Electronic energy + Delta-G solvation = -32539.823629 eV Core-core repulsion = 28338.797456 eV Total energy + Delta-G solvation = -4201.026173 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.28504 -40.06575 -38.28941 -36.70401 -34.93248 -34.78688 -34.11603 -31.13145 -30.52482 -29.94851 -29.48610 -27.39439 -26.21588 -25.40809 -24.16450 -23.31932 -22.61158 -22.03232 -21.24143 -19.95452 -19.46167 -18.70318 -17.63663 -16.96878 -16.55883 -16.26137 -16.16012 -15.59766 -15.53628 -15.18958 -15.16146 -14.79658 -14.40131 -14.33201 -14.21612 -13.85090 -13.68340 -13.45850 -13.35557 -12.84590 -12.71847 -12.51392 -12.36066 -11.98564 -11.87104 -11.72390 -11.46668 -11.35470 -11.26958 -11.18386 -11.13124 -11.08053 -10.64407 -10.63273 -10.54932 -10.30834 -10.17106 -10.10696 -9.80501 -9.46310 -9.13518 -8.97097 -8.76512 -8.58104 -7.96031 -6.59340 -6.27256 -4.36062 1.57596 1.74405 2.27200 2.50060 3.06731 3.17112 3.19477 3.25441 3.29659 3.51829 3.71527 4.12010 4.13885 4.25073 4.25944 4.33917 4.46413 4.58604 4.67507 4.82600 4.97846 5.05670 5.16916 5.27717 5.30538 5.32911 5.35572 5.39740 5.42715 5.47178 5.56918 5.59273 5.68099 5.79077 5.82437 5.84393 5.91818 6.10805 6.24300 6.42925 6.54083 6.59302 6.69966 6.73074 6.77334 6.82308 6.83156 6.90006 7.28065 7.34055 7.55476 7.71000 7.75078 7.94089 8.41966 8.62706 9.28324 10.79316 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.011717 B = 0.002447 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2389.046555 B =11441.013466 C =13384.698675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.102 3.898 3 H 0.052 0.948 4 C -0.512 4.512 5 H 0.067 0.933 6 C 0.071 3.929 7 N -0.885 5.885 8 Si 0.906 3.094 9 H -0.271 1.271 10 H -0.281 1.281 11 H -0.281 1.281 12 S -0.179 6.179 13 C -0.090 4.090 14 C -0.115 4.115 15 C -0.119 4.119 16 C -0.124 4.124 17 C -0.112 4.112 18 C 0.163 3.837 19 N -0.673 5.673 20 C 0.713 3.287 21 O -0.574 6.574 22 N -0.629 5.629 23 C 0.073 3.927 24 C 0.048 3.952 25 O -0.352 6.352 26 C 0.076 3.924 27 C -0.160 4.160 28 C -0.134 4.134 29 C -0.120 4.120 30 C 0.119 3.881 31 H 0.021 0.979 32 H 0.041 0.959 33 H 0.091 0.909 34 H 0.266 0.734 35 H 0.138 0.862 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.142 0.858 39 H 0.407 0.593 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.111 0.889 43 H 0.058 0.942 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.080 0.920 49 H 0.097 0.903 50 H 0.074 0.926 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.913 -7.479 -20.110 22.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.025 4.025 3 H 0.069 0.931 4 C -0.551 4.551 5 H 0.085 0.915 6 C -0.133 4.133 7 N -0.522 5.522 8 Si 0.733 3.267 9 H -0.195 1.195 10 H -0.207 1.207 11 H -0.207 1.207 12 S 0.068 5.932 13 C -0.206 4.206 14 C -0.140 4.140 15 C -0.139 4.139 16 C -0.146 4.146 17 C -0.133 4.133 18 C 0.062 3.938 19 N -0.322 5.322 20 C 0.415 3.585 21 O -0.451 6.451 22 N -0.367 5.367 23 C -0.051 4.051 24 C -0.030 4.030 25 O -0.270 6.270 26 C 0.035 3.965 27 C -0.198 4.198 28 C -0.171 4.171 29 C -0.158 4.158 30 C -0.004 4.004 31 H 0.040 0.960 32 H 0.060 0.940 33 H 0.109 0.891 34 H 0.076 0.924 35 H 0.156 0.844 36 H 0.138 0.862 37 H 0.138 0.862 38 H 0.160 0.840 39 H 0.246 0.754 40 H 0.109 0.891 41 H 0.102 0.898 42 H 0.129 0.871 43 H 0.076 0.924 44 H 0.109 0.891 45 H 0.089 0.911 46 H 0.102 0.898 47 H 0.089 0.911 48 H 0.099 0.901 49 H 0.116 0.884 50 H 0.092 0.908 51 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 5.956 -8.360 -20.504 22.930 hybrid contribution -0.139 0.866 1.550 1.781 sum 5.817 -7.494 -18.954 21.196 Atomic orbital electron populations 1.22118 0.96200 1.01553 1.00167 1.21083 0.95654 0.97235 0.88538 0.93063 1.20641 1.32752 1.13150 0.88567 0.91484 1.24890 0.94641 0.94921 0.98875 1.69880 1.35820 1.22420 1.24097 0.86299 0.78733 0.79603 0.82049 1.19498 1.20705 1.20700 1.84949 1.74138 1.32704 1.01376 1.21760 1.03957 0.99431 0.95422 1.21291 0.99468 0.92666 1.00564 1.21031 1.00805 0.99486 0.92611 1.20941 1.01073 0.96292 0.96272 1.21210 1.00200 0.92652 0.99284 1.16975 1.00357 0.84992 0.91509 1.42704 1.45680 1.20004 1.23785 1.15685 0.80325 0.80394 0.82048 1.90875 1.39654 1.66833 1.47774 1.47252 1.55950 1.15640 1.17829 1.22286 0.92948 0.98309 0.91519 1.22918 0.95494 0.97091 0.87466 1.87928 1.73989 1.37676 1.27400 1.22675 0.91213 0.93824 0.88742 1.23457 1.00641 0.97297 0.98368 1.22795 0.97811 0.97422 0.99109 1.22909 0.98920 1.00918 0.93061 1.22069 0.96162 0.97267 0.84892 0.96003 0.93996 0.89080 0.92436 0.84418 0.86205 0.86244 0.84024 0.75376 0.89105 0.89780 0.87065 0.92360 0.89076 0.91078 0.89782 0.91125 0.90097 0.88415 0.90807 0.87768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.35 37.16 0.31 -2.97 16 2 C 0.10 2.44 1.98 -27.88 -0.06 2.39 16 3 H 0.05 1.31 6.97 -51.93 -0.36 0.95 16 4 C -0.51 -13.33 8.58 -34.44 -0.30 -13.62 16 5 H 0.07 1.75 7.71 -52.49 -0.40 1.35 16 6 C 0.07 1.85 5.31 -17.82 -0.09 1.76 16 7 N -0.88 -23.67 11.40 55.43 0.63 -23.03 16 8 Si 0.91 20.25 29.54 -169.99 -5.02 15.23 16 9 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 S -0.18 -3.68 20.06 -107.50 -2.16 -5.83 16 13 C -0.09 -1.72 5.98 -38.91 -0.23 -1.95 16 14 C -0.12 -2.13 7.97 -39.40 -0.31 -2.45 16 15 C -0.12 -1.88 10.04 -39.58 -0.40 -2.28 16 16 C -0.12 -1.87 10.04 -39.55 -0.40 -2.27 16 17 C -0.11 -1.86 8.73 -39.43 -0.34 -2.20 16 18 C 0.16 2.86 6.37 -83.41 -0.53 2.33 16 19 N -0.67 -10.40 4.98 -14.06 -0.07 -10.47 16 20 C 0.71 10.79 8.18 -86.92 -0.71 10.08 16 21 O -0.57 -10.09 13.10 5.28 0.07 -10.03 16 22 N -0.63 -7.47 3.03 -178.38 -0.54 -8.01 16 23 C 0.07 0.71 6.57 -3.80 -0.03 0.68 16 24 C 0.05 0.40 6.86 37.06 0.25 0.65 16 25 O -0.35 -3.42 10.44 -35.23 -0.37 -3.79 16 26 C 0.08 0.68 1.12 -90.26 -0.10 0.57 16 27 C -0.16 -1.34 7.23 -26.09 -0.19 -1.53 16 28 C -0.13 -0.93 8.03 -25.84 -0.21 -1.13 16 29 C -0.12 -0.84 7.47 -26.11 -0.20 -1.03 16 30 C 0.12 1.22 5.75 -3.60 -0.02 1.20 16 31 H 0.02 0.46 5.89 -51.93 -0.31 0.15 16 32 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.09 2.28 6.28 -51.92 -0.33 1.95 16 34 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 35 H 0.14 2.71 4.92 -52.48 -0.26 2.45 16 36 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.12 1.46 8.06 -52.48 -0.42 1.04 16 38 H 0.14 2.36 5.95 -52.48 -0.31 2.04 16 39 H 0.41 5.73 5.40 -40.82 -0.22 5.51 16 40 H 0.09 0.86 5.64 -51.93 -0.29 0.57 16 41 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.48 7.11 -51.93 -0.37 0.12 16 44 H 0.09 0.78 7.95 -51.93 -0.41 0.37 16 45 H 0.07 0.63 7.18 -51.93 -0.37 0.26 16 46 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.10 0.55 8.09 -51.93 -0.42 0.13 16 50 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 51 H 0.10 1.13 6.96 -51.93 -0.36 0.77 16 LS Contribution 405.86 15.07 6.12 6.12 Total: -1.00 -29.58 405.86 -12.24 -41.82 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -7.36 Total: 9.76 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: -3.55 Total: -11.77 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.02 Total: -41.52 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.30 Total: -13.81 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Atomic # 16 Polarization: -3.68 SS G_CDS: -2.16 Total: -5.83 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -29.58 -12.24 -41.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161577528.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.781 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds