Wall clock time and date at job start Tue Mar 31 2020 06:40:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.46842 * 2 1 4 4 C 1.50697 * 109.47182 * 240.00427 * 2 1 3 5 5 H 1.08006 * 119.99421 * 239.99751 * 4 2 1 6 6 C 1.37872 * 120.00507 * 59.99322 * 4 2 1 7 7 N 1.31513 * 120.00166 * 179.97438 * 6 4 2 8 8 Si 1.86805 * 119.99881 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47005 * 270.00025 * 8 6 4 10 10 H 1.48498 * 109.47095 * 29.99680 * 8 6 4 11 11 H 1.48492 * 109.47160 * 149.99501 * 8 6 4 12 12 S 1.81396 * 109.47284 * 119.99713 * 2 1 3 13 13 C 1.76203 * 103.00327 * 290.93108 * 12 2 1 14 14 C 1.38772 * 120.09970 * 353.13889 * 13 12 2 15 15 C 1.38207 * 119.98717 * 179.69925 * 14 13 12 16 16 C 1.38288 * 120.19384 * 0.59026 * 15 14 13 17 17 C 1.38260 * 120.20840 * 359.68216 * 16 15 14 18 18 C 1.38634 * 120.00707 * 0.02562 * 17 16 15 19 19 N 1.40191 * 120.09464 * 179.97438 * 18 17 16 20 20 C 1.34774 * 120.00329 * 332.77992 * 19 18 17 21 21 O 1.21588 * 119.99933 * 4.11339 * 20 19 18 22 22 N 1.34775 * 120.00052 * 184.10903 * 20 19 18 23 23 C 1.47124 * 121.04472 * 4.82436 * 22 20 19 24 24 C 1.52811 * 108.94015 * 232.14497 * 23 22 20 25 25 O 1.43097 * 109.41269 * 306.14781 * 24 23 22 26 26 C 1.42593 * 113.95631 * 59.98746 * 25 24 23 27 27 C 1.53370 * 113.67007 * 72.57526 * 26 25 24 28 28 C 1.53850 * 86.96314 * 89.64217 * 27 26 25 29 29 C 1.53349 * 113.70472 * 170.64901 * 26 25 24 30 30 C 1.47324 * 121.04557 * 185.10256 * 22 20 19 31 31 H 1.08998 * 109.47729 * 62.78802 * 1 2 3 32 32 H 1.08998 * 109.46990 * 182.78905 * 1 2 3 33 33 H 1.09005 * 109.47333 * 302.78475 * 1 2 3 34 34 H 0.97001 * 119.99959 * 179.97438 * 7 6 4 35 35 H 1.08004 * 120.00698 * 359.97438 * 14 13 12 36 36 H 1.08005 * 119.90673 * 180.31873 * 15 14 13 37 37 H 1.08005 * 119.90069 * 179.70530 * 16 15 14 38 38 H 1.07999 * 119.99693 * 179.97438 * 17 16 15 39 39 H 0.97008 * 119.99765 * 152.78372 * 19 18 17 40 40 H 1.08999 * 109.60270 * 351.96089 * 23 22 20 41 41 H 1.09000 * 109.60141 * 112.42975 * 23 22 20 42 42 H 1.09000 * 109.56325 * 186.10691 * 24 23 22 43 43 H 1.08993 * 109.37368 * 66.07869 * 24 23 22 44 44 H 1.09004 * 113.63271 * 204.15984 * 27 26 25 45 45 H 1.08997 * 113.63300 * 335.12580 * 27 26 25 46 46 H 1.09001 * 113.60652 * 270.56258 * 28 27 26 47 47 H 1.08998 * 113.60747 * 139.69026 * 28 27 26 48 48 H 1.08997 * 113.63959 * 24.90968 * 29 26 25 49 49 H 1.09003 * 113.62789 * 155.78680 * 29 26 25 50 50 H 1.09007 * 109.74498 * 251.10058 * 30 22 20 51 51 H 1.09001 * 109.74479 * 11.82700 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 2.1380 -0.8590 -3.5565 8 14 0.6256 1.2798 -2.6541 9 1 -0.8022 0.8743 -2.6993 10 1 0.8488 2.1773 -1.4923 11 1 0.9769 1.9953 -3.9070 12 16 2.1346 -0.8550 1.4811 13 6 1.6886 0.2446 2.7836 14 6 1.1612 1.4941 2.4896 15 6 0.8063 2.3523 3.5131 16 6 0.9864 1.9749 4.8312 17 6 1.5164 0.7341 5.1333 18 6 1.8697 -0.1359 4.1134 19 7 2.4078 -1.3942 4.4176 20 6 3.0831 -1.5778 5.5694 21 8 3.1617 -0.6738 6.3788 22 7 3.6711 -2.7634 5.8242 23 6 3.6807 -3.8372 4.8185 24 6 3.1474 -5.1192 5.4566 25 8 3.8924 -5.4049 6.6444 26 6 3.8213 -4.3798 7.6330 27 6 2.4634 -4.3011 8.3418 28 6 3.0300 -5.3036 9.3621 29 6 4.4271 -4.7822 8.9831 30 6 4.3191 -3.0271 7.1207 31 1 -0.3634 0.4699 -0.9139 32 1 -0.3633 -1.0264 0.0500 33 1 -0.3634 0.5565 0.8640 34 1 1.9033 -0.5278 -4.4375 35 1 1.0239 1.7941 1.4612 36 1 0.3911 3.3225 3.2828 37 1 0.7118 2.6512 5.6273 38 1 1.6560 0.4430 6.1639 39 1 2.2941 -2.1327 3.7990 40 1 3.0454 -3.5570 3.9783 41 1 4.7001 -4.0025 4.4697 42 1 3.2508 -5.9467 4.7546 43 1 2.0957 -4.9865 5.7100 44 1 2.2481 -3.3204 8.7660 45 1 1.6383 -4.6985 7.7507 46 1 2.8640 -6.3456 9.0886 47 1 2.7472 -5.0852 10.3919 48 1 5.1804 -5.5663 8.9078 49 1 4.7565 -3.9347 9.5842 50 1 5.4012 -3.0576 6.9921 51 1 4.0539 -2.2440 7.8309 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161577655.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:26 Heat of formation + Delta-G solvation = 3.862050 kcal Electronic energy + Delta-G solvation = -32606.190720 eV Core-core repulsion = 28405.637288 eV Total energy + Delta-G solvation = -4200.553433 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.34253 -40.14890 -38.39141 -36.73775 -34.99041 -34.91432 -34.22325 -31.61017 -30.59033 -30.39275 -29.60397 -27.44932 -26.23527 -25.35418 -24.19578 -23.42529 -22.75158 -22.22841 -21.34160 -20.02264 -19.49048 -18.75080 -17.70791 -17.08032 -16.67814 -16.60457 -16.30489 -15.68494 -15.60422 -15.28494 -15.21239 -14.83394 -14.48419 -14.47660 -14.22662 -13.91883 -13.82494 -13.62137 -13.52010 -13.03855 -12.81860 -12.70633 -12.43093 -12.40693 -12.07106 -11.89171 -11.76420 -11.48131 -11.36131 -11.28928 -11.24058 -11.20116 -10.66513 -10.65513 -10.55146 -10.41512 -10.19577 -9.89693 -9.78062 -9.63963 -9.28992 -9.10534 -8.81989 -8.80513 -8.05289 -6.74396 -6.31390 -4.35883 1.45689 1.61378 2.14041 2.35990 2.98628 3.10695 3.17697 3.18960 3.23785 3.28422 3.59947 4.01260 4.10649 4.17813 4.23806 4.31279 4.44709 4.55943 4.64425 4.80000 4.95714 4.98416 5.13138 5.16397 5.23560 5.26402 5.30958 5.37922 5.38710 5.44200 5.48555 5.55513 5.65824 5.69555 5.72700 5.77354 5.90099 5.99877 6.04011 6.10990 6.13827 6.18696 6.32738 6.48256 6.53636 6.63693 6.71901 6.78565 6.81382 6.95970 7.22208 7.28500 7.67336 8.15217 8.33377 8.67540 9.23974 10.80122 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.002424 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.945983 B =11546.959418 C =13118.038317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.058 3.942 3 H 0.052 0.948 4 C -0.513 4.513 5 H 0.086 0.914 6 C 0.084 3.916 7 N -0.886 5.886 8 Si 0.887 3.113 9 H -0.274 1.274 10 H -0.266 1.266 11 H -0.291 1.291 12 S -0.134 6.134 13 C -0.103 4.103 14 C -0.118 4.118 15 C -0.121 4.121 16 C -0.120 4.120 17 C -0.117 4.117 18 C 0.168 3.832 19 N -0.673 5.673 20 C 0.713 3.287 21 O -0.573 6.573 22 N -0.628 5.628 23 C 0.072 3.928 24 C 0.048 3.952 25 O -0.351 6.351 26 C 0.076 3.924 27 C -0.160 4.160 28 C -0.134 4.134 29 C -0.120 4.120 30 C 0.119 3.881 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.040 0.960 34 H 0.270 0.730 35 H 0.132 0.868 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.151 0.849 39 H 0.409 0.591 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.112 0.888 43 H 0.058 0.942 44 H 0.091 0.909 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.097 0.903 50 H 0.074 0.926 51 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.097 -5.782 23.192 23.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.071 4.071 3 H 0.070 0.930 4 C -0.552 4.552 5 H 0.103 0.897 6 C -0.121 4.121 7 N -0.523 5.523 8 Si 0.716 3.284 9 H -0.201 1.201 10 H -0.191 1.191 11 H -0.219 1.219 12 S 0.113 5.887 13 C -0.218 4.218 14 C -0.142 4.142 15 C -0.142 4.142 16 C -0.142 4.142 17 C -0.139 4.139 18 C 0.067 3.933 19 N -0.322 5.322 20 C 0.416 3.584 21 O -0.451 6.451 22 N -0.366 5.366 23 C -0.052 4.052 24 C -0.030 4.030 25 O -0.269 6.269 26 C 0.035 3.965 27 C -0.198 4.198 28 C -0.171 4.171 29 C -0.158 4.158 30 C -0.004 4.004 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.080 0.920 35 H 0.150 0.850 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.168 0.832 39 H 0.248 0.752 40 H 0.109 0.891 41 H 0.103 0.897 42 H 0.130 0.870 43 H 0.077 0.923 44 H 0.109 0.891 45 H 0.089 0.911 46 H 0.102 0.898 47 H 0.089 0.911 48 H 0.099 0.901 49 H 0.116 0.884 50 H 0.093 0.907 51 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.919 -6.500 23.525 24.424 hybrid contribution -1.429 1.841 -1.034 2.550 sum -0.510 -4.659 22.491 22.974 Atomic orbital electron populations 1.22518 0.96998 1.02244 0.99699 1.21392 0.94760 0.98240 0.92695 0.93043 1.20353 1.33529 1.14432 0.86924 0.89652 1.24843 0.95394 0.96626 0.95245 1.69835 1.44405 1.39926 0.98086 0.86849 0.80686 0.83355 0.77486 1.20083 1.19144 1.21866 1.85048 1.74106 1.30306 0.99239 1.21808 1.05492 0.98960 0.95573 1.21181 1.00302 0.92550 1.00191 1.21020 1.01044 0.99406 0.92690 1.20975 1.00587 0.96380 0.96214 1.21432 0.98630 0.93979 0.99830 1.16990 0.99264 0.85615 0.91404 1.42757 1.55643 1.11996 1.21786 1.15677 0.78189 0.82473 0.82078 1.90838 1.65900 1.40687 1.47644 1.47271 1.59544 1.13070 1.16681 1.22309 1.03578 0.87853 0.91417 1.22921 0.95557 0.97329 0.87162 1.87937 1.71528 1.41502 1.25980 1.22675 0.97197 0.87787 0.88809 1.23455 0.97178 1.00641 0.98497 1.22793 0.95731 0.99473 0.99131 1.22911 0.97906 1.01992 0.93003 1.22086 0.97238 0.96639 0.84458 0.93068 0.91605 0.94107 0.92012 0.85013 0.86224 0.86119 0.83174 0.75194 0.89089 0.89672 0.86963 0.92330 0.89087 0.91062 0.89755 0.91121 0.90080 0.88420 0.90737 0.87738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.20 8.28 37.15 0.31 -2.90 16 2 C 0.06 1.30 1.57 -27.89 -0.04 1.25 16 3 H 0.05 1.18 5.92 -51.92 -0.31 0.88 16 4 C -0.51 -13.68 9.16 -34.44 -0.32 -14.00 16 5 H 0.09 2.49 7.96 -52.48 -0.42 2.07 16 6 C 0.08 2.29 5.45 -17.82 -0.10 2.20 16 7 N -0.89 -25.68 13.96 55.43 0.77 -24.91 16 8 Si 0.89 20.59 24.40 -169.99 -4.15 16.44 16 9 H -0.27 -6.17 6.84 56.52 0.39 -5.78 16 10 H -0.27 -5.87 6.53 56.52 0.37 -5.50 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 S -0.13 -2.63 19.98 -107.50 -2.15 -4.78 16 13 C -0.10 -1.84 6.04 -38.92 -0.24 -2.08 16 14 C -0.12 -2.02 8.03 -39.40 -0.32 -2.34 16 15 C -0.12 -1.78 10.04 -39.57 -0.40 -2.17 16 16 C -0.12 -1.69 10.04 -39.55 -0.40 -2.09 16 17 C -0.12 -1.84 8.77 -39.43 -0.35 -2.19 16 18 C 0.17 2.81 6.44 -83.42 -0.54 2.27 16 19 N -0.67 -9.91 5.05 -14.07 -0.07 -9.98 16 20 C 0.71 10.29 8.20 -86.92 -0.71 9.58 16 21 O -0.57 -9.57 12.87 5.29 0.07 -9.51 16 22 N -0.63 -7.14 3.03 -178.38 -0.54 -7.69 16 23 C 0.07 0.67 6.57 -3.80 -0.02 0.65 16 24 C 0.05 0.39 6.86 37.06 0.25 0.64 16 25 O -0.35 -3.34 10.44 -35.23 -0.37 -3.71 16 26 C 0.08 0.65 1.12 -90.26 -0.10 0.55 16 27 C -0.16 -1.30 7.23 -26.10 -0.19 -1.49 16 28 C -0.13 -0.90 8.03 -25.84 -0.21 -1.11 16 29 C -0.12 -0.81 7.47 -26.10 -0.20 -1.00 16 30 C 0.12 1.17 5.75 -3.60 -0.02 1.15 16 31 H 0.05 1.09 3.23 -51.93 -0.17 0.92 16 32 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 33 H 0.04 0.74 5.98 -51.93 -0.31 0.43 16 34 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 35 H 0.13 2.35 4.91 -52.48 -0.26 2.09 16 36 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 37 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 38 H 0.15 2.39 5.63 -52.49 -0.30 2.10 16 39 H 0.41 5.50 5.24 -40.82 -0.21 5.29 16 40 H 0.09 0.83 5.63 -51.93 -0.29 0.54 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.06 0.48 7.11 -51.93 -0.37 0.11 16 44 H 0.09 0.75 7.95 -51.93 -0.41 0.34 16 45 H 0.07 0.62 7.18 -51.93 -0.37 0.25 16 46 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.10 0.53 8.09 -51.93 -0.42 0.11 16 50 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 51 H 0.10 1.08 6.96 -51.93 -0.36 0.72 16 LS Contribution 398.47 15.07 6.00 6.00 Total: -1.00 -30.86 398.47 -11.19 -42.05 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -7.19 Total: 9.14 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -3.57 Total: -13.07 kcal Atomic # 7 Polarization: -42.74 SS G_CDS: 0.16 Total: -42.57 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.30 Total: -13.21 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.15 Total: 16.44 kcal Atomic # 16 Polarization: -2.63 SS G_CDS: -2.15 Total: -4.78 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.86 -11.19 -42.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161577655.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.915 kcal (2) G-P(sol) polarization free energy of solvation -30.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds