Wall clock time and date at job start Tue Mar 31 2020 06:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.46842 * 2 1 4 4 C 1.50697 * 109.47182 * 240.00427 * 2 1 3 5 5 H 1.08006 * 119.99421 * 239.99751 * 4 2 1 6 6 C 1.37872 * 120.00507 * 59.99322 * 4 2 1 7 7 N 1.31513 * 120.00166 * 179.97438 * 6 4 2 8 8 Si 1.86805 * 119.99881 * 0.02562 * 6 4 2 9 9 H 1.48498 * 109.47005 * 270.00025 * 8 6 4 10 10 H 1.48498 * 109.47095 * 29.99680 * 8 6 4 11 11 H 1.48492 * 109.47160 * 149.99501 * 8 6 4 12 12 S 1.81396 * 109.47284 * 119.99713 * 2 1 3 13 13 C 1.76203 * 103.00327 * 290.93108 * 12 2 1 14 14 C 1.38772 * 120.09970 * 353.13889 * 13 12 2 15 15 C 1.38207 * 119.98717 * 179.69925 * 14 13 12 16 16 C 1.38288 * 120.19384 * 0.59026 * 15 14 13 17 17 C 1.38260 * 120.20840 * 359.68216 * 16 15 14 18 18 C 1.38634 * 120.00707 * 0.02562 * 17 16 15 19 19 N 1.40191 * 120.09464 * 179.97438 * 18 17 16 20 20 C 1.34774 * 120.00329 * 332.77992 * 19 18 17 21 21 O 1.21588 * 119.99933 * 4.11339 * 20 19 18 22 22 N 1.34775 * 120.00052 * 184.10903 * 20 19 18 23 23 C 1.47124 * 121.04472 * 4.82436 * 22 20 19 24 24 C 1.52811 * 108.94015 * 232.14497 * 23 22 20 25 25 O 1.43097 * 109.41269 * 306.14781 * 24 23 22 26 26 C 1.42593 * 113.95631 * 59.98746 * 25 24 23 27 27 C 1.53370 * 113.67007 * 72.57526 * 26 25 24 28 28 C 1.53850 * 86.96314 * 89.64217 * 27 26 25 29 29 C 1.53349 * 113.70472 * 170.64901 * 26 25 24 30 30 C 1.47324 * 121.04557 * 185.10256 * 22 20 19 31 31 H 1.08998 * 109.47729 * 62.78802 * 1 2 3 32 32 H 1.08998 * 109.46990 * 182.78905 * 1 2 3 33 33 H 1.09005 * 109.47333 * 302.78475 * 1 2 3 34 34 H 0.97001 * 119.99959 * 179.97438 * 7 6 4 35 35 H 1.08004 * 120.00698 * 359.97438 * 14 13 12 36 36 H 1.08005 * 119.90673 * 180.31873 * 15 14 13 37 37 H 1.08005 * 119.90069 * 179.70530 * 16 15 14 38 38 H 1.07999 * 119.99693 * 179.97438 * 17 16 15 39 39 H 0.97008 * 119.99765 * 152.78372 * 19 18 17 40 40 H 1.08999 * 109.60270 * 351.96089 * 23 22 20 41 41 H 1.09000 * 109.60141 * 112.42975 * 23 22 20 42 42 H 1.09000 * 109.56325 * 186.10691 * 24 23 22 43 43 H 1.08993 * 109.37368 * 66.07869 * 24 23 22 44 44 H 1.09004 * 113.63271 * 204.15984 * 27 26 25 45 45 H 1.08997 * 113.63300 * 335.12580 * 27 26 25 46 46 H 1.09001 * 113.60652 * 270.56258 * 28 27 26 47 47 H 1.08998 * 113.60747 * 139.69026 * 28 27 26 48 48 H 1.08997 * 113.63959 * 24.90968 * 29 26 25 49 49 H 1.09003 * 113.62789 * 155.78680 * 29 26 25 50 50 H 1.09007 * 109.74498 * 251.10058 * 30 22 20 51 51 H 1.09001 * 109.74479 * 11.82700 * 30 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1313 6 6 1.6992 -0.2393 -2.4827 7 7 2.1380 -0.8590 -3.5565 8 14 0.6256 1.2798 -2.6541 9 1 -0.8022 0.8743 -2.6993 10 1 0.8488 2.1773 -1.4923 11 1 0.9769 1.9953 -3.9070 12 16 2.1346 -0.8550 1.4811 13 6 1.6886 0.2446 2.7836 14 6 1.1612 1.4941 2.4896 15 6 0.8063 2.3523 3.5131 16 6 0.9864 1.9749 4.8312 17 6 1.5164 0.7341 5.1333 18 6 1.8697 -0.1359 4.1134 19 7 2.4078 -1.3942 4.4176 20 6 3.0831 -1.5778 5.5694 21 8 3.1617 -0.6738 6.3788 22 7 3.6711 -2.7634 5.8242 23 6 3.6807 -3.8372 4.8185 24 6 3.1474 -5.1192 5.4566 25 8 3.8924 -5.4049 6.6444 26 6 3.8213 -4.3798 7.6330 27 6 2.4634 -4.3011 8.3418 28 6 3.0300 -5.3036 9.3621 29 6 4.4271 -4.7822 8.9831 30 6 4.3191 -3.0271 7.1207 31 1 -0.3634 0.4699 -0.9139 32 1 -0.3633 -1.0264 0.0500 33 1 -0.3634 0.5565 0.8640 34 1 1.9033 -0.5278 -4.4375 35 1 1.0239 1.7941 1.4612 36 1 0.3911 3.3225 3.2828 37 1 0.7118 2.6512 5.6273 38 1 1.6560 0.4430 6.1639 39 1 2.2941 -2.1327 3.7990 40 1 3.0454 -3.5570 3.9783 41 1 4.7001 -4.0025 4.4697 42 1 3.2508 -5.9467 4.7546 43 1 2.0957 -4.9865 5.7100 44 1 2.2481 -3.3204 8.7660 45 1 1.6383 -4.6985 7.7507 46 1 2.8640 -6.3456 9.0886 47 1 2.7472 -5.0852 10.3919 48 1 5.1804 -5.5663 8.9078 49 1 4.7565 -3.9347 9.5842 50 1 5.4012 -3.0576 6.9921 51 1 4.0539 -2.2440 7.8309 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161577655.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:25 Heat of formation + Delta-G solvation = -13.413064 kcal Electronic energy + Delta-G solvation = -32606.939825 eV Core-core repulsion = 28405.637288 eV Total energy + Delta-G solvation = -4201.302538 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 376.161 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.26936 -41.07263 -39.52861 -37.48508 -36.38868 -35.92517 -35.74483 -33.47638 -31.81257 -31.30690 -30.69717 -28.34283 -27.27965 -26.83423 -24.92056 -24.50458 -23.94414 -23.54778 -22.74423 -21.02918 -20.19725 -19.87429 -19.09393 -18.50693 -18.14539 -17.40016 -17.16736 -17.03169 -16.69739 -16.52627 -16.03129 -15.94118 -15.64252 -15.46838 -15.31641 -15.23740 -15.09976 -14.71597 -14.67905 -14.38257 -14.12639 -13.98957 -13.66163 -13.39747 -13.27102 -13.03106 -12.94111 -12.74751 -12.51454 -12.39807 -12.16280 -12.12077 -11.94440 -11.79656 -11.72487 -11.56552 -11.43703 -11.33646 -11.02472 -10.94619 -10.90213 -10.76846 -10.56009 -9.72826 -9.24436 -8.40397 -8.21178 -6.49900 0.23176 0.37289 0.69311 1.27506 1.29694 1.32808 1.42536 1.71116 1.86686 2.23552 2.53172 2.56107 2.79963 2.93255 3.46257 3.58388 3.63868 3.82102 3.85121 3.87998 3.92236 4.08631 4.17280 4.26572 4.28101 4.37059 4.40081 4.41370 4.47422 4.53686 4.54170 4.59381 4.66778 4.71456 4.75886 4.81201 4.81940 4.90165 5.00390 5.04195 5.08120 5.14605 5.26823 5.29704 5.32191 5.34947 5.35054 5.46226 5.58817 5.66984 6.03737 6.04413 6.13587 6.52939 6.58645 7.13825 7.21614 8.74932 Molecular weight = 376.16amu Principal moments of inertia in cm(-1) A = 0.013676 B = 0.002424 C = 0.002134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.945983 B =11546.959418 C =13118.038317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 H 0.049 0.951 4 C -0.519 4.519 5 H 0.044 0.956 6 C 0.029 3.971 7 N -0.935 5.935 8 Si 0.946 3.054 9 H -0.259 1.259 10 H -0.245 1.245 11 H -0.294 1.294 12 S -0.143 6.143 13 C -0.121 4.121 14 C -0.130 4.130 15 C -0.116 4.116 16 C -0.106 4.106 17 C -0.126 4.126 18 C 0.163 3.837 19 N -0.673 5.673 20 C 0.709 3.291 21 O -0.598 6.598 22 N -0.623 5.623 23 C 0.068 3.932 24 C 0.050 3.950 25 O -0.361 6.361 26 C 0.072 3.928 27 C -0.162 4.162 28 C -0.127 4.127 29 C -0.114 4.114 30 C 0.116 3.884 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.272 0.728 35 H 0.125 0.875 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.149 0.851 39 H 0.412 0.588 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.133 0.867 43 H 0.058 0.942 44 H 0.088 0.912 45 H 0.062 0.938 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.112 0.888 50 H 0.079 0.921 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.101 -4.431 25.520 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.073 4.073 3 H 0.067 0.933 4 C -0.557 4.557 5 H 0.062 0.938 6 C -0.171 4.171 7 N -0.574 5.574 8 Si 0.772 3.228 9 H -0.184 1.184 10 H -0.169 1.169 11 H -0.221 1.221 12 S 0.102 5.898 13 C -0.236 4.236 14 C -0.154 4.154 15 C -0.137 4.137 16 C -0.127 4.127 17 C -0.148 4.148 18 C 0.061 3.939 19 N -0.322 5.322 20 C 0.411 3.589 21 O -0.478 6.478 22 N -0.360 5.360 23 C -0.054 4.054 24 C -0.027 4.027 25 O -0.279 6.279 26 C 0.031 3.969 27 C -0.199 4.199 28 C -0.164 4.164 29 C -0.152 4.152 30 C -0.006 4.006 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.142 0.858 36 H 0.170 0.830 37 H 0.173 0.827 38 H 0.166 0.834 39 H 0.252 0.748 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.151 0.849 43 H 0.076 0.924 44 H 0.106 0.894 45 H 0.081 0.919 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.102 0.898 49 H 0.130 0.870 50 H 0.098 0.902 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.274 -5.181 25.887 26.402 hybrid contribution -0.973 1.371 -1.624 2.337 sum -1.246 -3.810 24.263 24.592 Atomic orbital electron populations 1.22411 0.95164 1.02567 1.00587 1.21190 0.96141 0.97607 0.92371 0.93340 1.20525 1.32725 1.13351 0.89142 0.93819 1.25716 0.96802 0.99865 0.94747 1.69980 1.46451 1.42128 0.98793 0.85881 0.79377 0.79655 0.77929 1.18436 1.16879 1.22116 1.84935 1.74948 1.30884 0.98986 1.21732 1.07682 0.99262 0.94964 1.21282 1.00820 0.92677 1.00645 1.21344 1.00069 1.00145 0.92110 1.21385 0.98345 0.95873 0.97091 1.21577 0.99059 0.94721 0.99450 1.17166 0.99128 0.86401 0.91175 1.42752 1.55687 1.11711 1.22045 1.15807 0.78305 0.83071 0.81669 1.90806 1.66910 1.41788 1.48321 1.47368 1.58550 1.12510 1.17583 1.22464 1.04010 0.87832 0.91137 1.22995 0.95270 0.97245 0.87166 1.87931 1.71760 1.41830 1.26402 1.22800 0.97884 0.86923 0.89286 1.23450 0.96653 1.00942 0.98905 1.22760 0.95380 0.98868 0.99441 1.22961 0.97950 1.02551 0.91711 1.22230 0.97429 0.97328 0.83610 0.93504 0.91858 0.91495 0.91865 0.85751 0.83024 0.82685 0.83386 0.74807 0.89148 0.89189 0.84931 0.92390 0.89378 0.91928 0.89992 0.89765 0.89819 0.86982 0.90247 0.88321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.90 8.28 71.98 0.60 -5.31 16 2 C 0.06 2.50 1.57 29.85 0.05 2.55 16 3 H 0.05 2.20 5.92 -2.39 -0.01 2.18 16 4 C -0.52 -28.48 9.16 25.60 0.23 -28.24 16 5 H 0.04 2.69 7.96 -2.91 -0.02 2.67 16 6 C 0.03 1.63 5.45 84.65 0.46 2.09 16 7 N -0.94 -55.97 13.96 21.45 0.30 -55.67 16 8 Si 0.95 41.99 24.40 68.60 1.67 43.66 16 9 H -0.26 -10.79 6.84 99.48 0.68 -10.11 16 10 H -0.25 -9.94 6.53 99.48 0.65 -9.30 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 12 S -0.14 -5.68 19.98 -56.49 -1.13 -6.81 16 13 C -0.12 -4.22 6.04 22.70 0.14 -4.09 16 14 C -0.13 -4.19 8.03 22.39 0.18 -4.01 16 15 C -0.12 -3.00 10.04 22.27 0.22 -2.77 16 16 C -0.11 -2.62 10.04 22.29 0.22 -2.40 16 17 C -0.13 -3.74 8.77 22.37 0.20 -3.54 16 18 C 0.16 5.28 6.44 38.20 0.25 5.53 16 19 N -0.67 -19.72 5.05 -316.68 -1.60 -21.32 16 20 C 0.71 20.33 8.20 179.06 1.47 21.80 16 21 O -0.60 -19.81 12.87 -3.99 -0.05 -19.86 16 22 N -0.62 -14.00 3.03 -836.52 -2.54 -16.54 16 23 C 0.07 1.25 6.57 86.20 0.57 1.82 16 24 C 0.05 0.77 6.86 71.92 0.49 1.27 16 25 O -0.36 -6.46 10.44 -148.98 -1.56 -8.02 16 26 C 0.07 1.16 1.12 -10.56 -0.01 1.14 16 27 C -0.16 -2.48 7.23 31.00 0.22 -2.25 16 28 C -0.13 -1.50 8.03 31.17 0.25 -1.25 16 29 C -0.11 -1.34 7.47 31.00 0.23 -1.11 16 30 C 0.12 2.22 5.75 86.21 0.50 2.71 16 31 H 0.05 1.89 3.23 -2.39 -0.01 1.88 16 32 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.07 2.29 5.98 -2.38 -0.01 2.27 16 34 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.12 4.17 4.91 -2.91 -0.01 4.15 16 36 H 0.15 2.93 8.06 -2.91 -0.02 2.91 16 37 H 0.16 2.77 8.06 -2.91 -0.02 2.75 16 38 H 0.15 4.51 5.63 -2.91 -0.02 4.50 16 39 H 0.41 11.19 5.24 -92.70 -0.49 10.71 16 40 H 0.09 1.66 5.63 -2.39 -0.01 1.64 16 41 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 42 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 0.91 7.11 -2.39 -0.02 0.89 16 44 H 0.09 1.39 7.95 -2.39 -0.02 1.38 16 45 H 0.06 1.06 7.18 -2.39 -0.02 1.04 16 46 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.11 0.98 8.09 -2.39 -0.02 0.97 16 50 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 51 H 0.10 2.00 6.96 -2.39 -0.02 1.99 16 Total: -1.00 -68.23 398.47 1.77 -66.46 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: 0.41 Total: 34.15 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: 6.26 Total: -16.07 kcal Atomic # 7 Polarization: -89.69 SS G_CDS: -3.84 Total: -93.53 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: -1.61 Total: -27.88 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.67 Total: 43.66 kcal Atomic # 16 Polarization: -5.68 SS G_CDS: -1.13 Total: -6.81 kcal Total: -68.23 1.77 -66.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161577655.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.050 kcal (2) G-P(sol) polarization free energy of solvation -68.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds