Wall clock time and date at job start Tue Mar 31 2020 05:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47028 * 2 1 4 4 C 1.53000 * 109.46879 * 240.00142 * 2 1 3 5 5 Si 1.86296 * 109.47305 * 120.00122 * 2 1 3 6 6 C 1.86299 * 109.47231 * 300.00146 * 5 2 1 7 7 C 1.86297 * 109.47180 * 180.02562 * 5 2 1 8 8 O 1.63098 * 109.47017 * 60.00007 * 5 2 1 9 9 C 1.35897 * 114.00086 * 180.02562 * 8 5 2 10 10 C 1.36707 * 120.06880 * 89.99657 * 9 8 5 11 11 C 1.40230 * 120.30429 * 179.97438 * 10 9 8 12 12 C 1.47456 * 119.80897 * 180.02562 * 11 10 9 13 13 O 1.21513 * 119.99610 * 179.97438 * 12 11 10 14 14 O 1.34754 * 120.00525 * 359.97438 * 12 11 10 15 15 C 1.39345 * 120.37139 * 0.02729 * 11 10 9 16 16 C 1.38731 * 119.76125 * 359.97438 * 15 11 10 17 17 C 1.40270 * 120.06380 * 270.04321 * 9 8 5 18 18 C 1.46248 * 133.80821 * 359.94159 * 17 9 8 19 19 C 1.34440 * 107.03057 * 180.02562 * 18 17 9 20 20 N 1.36644 * 109.94861 * 359.97438 * 19 18 17 21 21 C 1.46505 * 125.07639 * 180.26501 * 20 19 18 22 22 C 1.50694 * 109.47214 * 264.70168 * 21 20 19 23 23 H 1.08000 * 120.00031 * 359.97438 * 22 21 20 24 24 C 1.37879 * 119.99855 * 180.02562 * 22 21 20 25 25 N 1.31510 * 119.99735 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00000 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.46952 * 90.00497 * 26 24 22 28 28 H 1.48496 * 109.47136 * 210.00033 * 26 24 22 29 29 H 1.48497 * 109.47189 * 330.00428 * 26 24 22 30 30 H 1.09003 * 109.46936 * 299.99506 * 1 2 3 31 31 H 1.08993 * 109.47191 * 59.99825 * 1 2 3 32 32 H 1.08993 * 109.47335 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47138 * 180.02562 * 3 2 1 34 34 H 1.08993 * 109.47277 * 300.00122 * 3 2 1 35 35 H 1.09003 * 109.46858 * 60.00446 * 3 2 1 36 36 H 1.08994 * 109.47458 * 299.99700 * 4 2 1 37 37 H 1.09003 * 109.47292 * 60.00137 * 4 2 1 38 38 H 1.09004 * 109.46872 * 179.97438 * 4 2 1 39 39 H 1.09003 * 109.47355 * 179.97438 * 6 5 2 40 40 H 1.09002 * 109.46915 * 299.99481 * 6 5 2 41 41 H 1.08999 * 109.47456 * 59.99567 * 6 5 2 42 42 H 1.08998 * 109.47093 * 299.99855 * 7 5 2 43 43 H 1.08993 * 109.47432 * 59.99978 * 7 5 2 44 44 H 1.09006 * 109.47354 * 180.02562 * 7 5 2 45 45 H 1.08000 * 119.84238 * 0.02649 * 10 9 8 46 46 H 0.96703 * 116.99838 * 179.97438 * 14 12 11 47 47 H 1.07994 * 120.11808 * 179.97438 * 15 11 10 48 48 H 1.08000 * 126.48617 * 0.05098 * 18 17 9 49 49 H 1.08001 * 125.02971 * 180.02562 * 19 18 17 50 50 H 1.09003 * 109.46554 * 24.70282 * 21 20 19 51 51 H 1.09000 * 109.47025 * 144.69623 * 21 20 19 52 52 H 0.97007 * 120.00011 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 -1.2493 5 14 2.1510 -0.8782 1.5211 6 6 1.5301 -0.0001 3.0423 7 6 4.0140 -0.8775 1.5214 8 8 1.6074 -2.4159 1.5210 9 6 2.0080 -3.1439 2.5964 10 6 1.2436 -3.1691 3.7296 11 6 1.6520 -3.9190 4.8419 12 6 0.8189 -3.9390 6.0584 13 8 1.1692 -4.5880 7.0241 14 8 -0.3310 -3.2375 6.0993 15 6 2.8406 -4.6454 4.8041 16 6 3.6232 -4.6262 3.6588 17 6 3.2070 -3.8701 2.5462 18 6 4.2346 -4.0581 1.5228 19 6 5.1672 -4.8728 2.0462 20 7 4.8199 -5.2206 3.3212 21 6 5.6040 -6.0926 4.1993 22 6 5.0864 -7.5042 4.0977 23 1 4.2561 -7.7293 3.4447 24 6 5.6722 -8.5083 4.8392 25 7 5.2201 -9.7401 4.7509 26 14 7.1078 -8.1189 5.9691 27 1 6.5948 -7.7631 7.3165 28 1 7.9917 -9.3075 6.0740 29 1 7.8780 -6.9766 5.4151 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6767 -1.7489 -1.2493 37 1 1.6766 -0.2074 -2.1393 38 1 3.1300 -0.7208 -1.2495 39 1 1.8930 -0.5142 3.9322 40 1 1.8935 1.0276 3.0423 41 1 0.4401 0.0000 3.0423 42 1 4.3777 -1.3911 0.6315 43 1 4.3770 0.1502 1.5217 44 1 4.3774 -1.3918 2.4112 45 1 0.3207 -2.6096 3.7679 46 1 -0.8433 -3.2817 6.9182 47 1 3.1513 -5.2212 5.6633 48 1 4.2430 -3.6242 0.5338 49 1 6.0595 -5.2029 1.5350 50 1 6.6508 -6.0667 3.8963 51 1 5.5151 -5.7462 5.2289 52 1 5.6325 -10.4466 5.2723 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169900074.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:46 Heat of formation + Delta-G solvation = -116.798819 kcal Electronic energy + Delta-G solvation = -32915.821862 eV Core-core repulsion = 28695.915669 eV Total energy + Delta-G solvation = -4219.906193 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 375.170 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -41.11722 -39.82121 -38.23746 -36.13566 -36.01300 -35.41202 -33.50950 -31.71725 -29.62316 -28.93717 -28.35988 -28.30953 -27.23623 -27.10513 -26.51064 -24.13436 -23.04563 -21.61972 -20.80358 -20.03849 -19.50311 -17.85571 -17.37251 -17.20422 -16.47720 -16.22128 -15.54887 -15.46540 -15.26522 -14.98290 -14.72393 -14.41499 -14.14986 -14.02273 -13.78336 -13.48847 -13.22955 -13.04108 -12.83944 -12.76691 -12.50216 -12.46268 -12.33806 -12.20462 -12.14827 -12.13346 -11.95691 -11.72042 -11.67032 -11.43023 -11.25267 -11.21724 -10.99735 -10.94076 -10.92388 -10.81515 -10.69059 -10.43266 -10.21035 -9.74698 -9.54621 -9.30806 -8.93854 -8.84967 -7.91011 -7.09137 -6.33425 -4.38680 0.92105 1.56760 2.35328 2.54889 2.78067 2.90660 3.07824 3.11168 3.15538 3.19508 3.21597 3.40685 3.63543 4.14908 4.15674 4.82993 4.83513 4.94631 5.05518 5.13789 5.22340 5.28751 5.39173 5.48218 5.52598 5.53729 5.56656 5.62075 5.62740 5.67959 5.72349 5.76070 5.79932 5.81307 5.89282 5.90887 6.01267 6.06447 6.15941 6.18644 6.22105 6.34924 6.37169 6.39513 6.44672 6.55000 6.55718 6.60996 6.69203 7.07327 7.19265 7.26560 7.70025 7.76973 8.08076 8.21529 8.71222 9.21502 10.78749 Molecular weight = 375.17amu Principal moments of inertia in cm(-1) A = 0.010650 B = 0.003055 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.381664 B = 9162.607387 C =10949.136658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.371 4.371 3 C -0.135 4.135 4 C -0.135 4.135 5 Si 1.274 2.726 6 C -0.505 4.505 7 C -0.499 4.499 8 O -0.555 6.555 9 C 0.154 3.846 10 C -0.145 4.145 11 C -0.113 4.113 12 C 0.532 3.468 13 O -0.515 6.515 14 O -0.514 6.514 15 C -0.039 4.039 16 C 0.104 3.896 17 C -0.110 4.110 18 C -0.221 4.221 19 C 0.081 3.919 20 N -0.438 5.438 21 C 0.204 3.796 22 C -0.551 4.551 23 H 0.083 0.917 24 C 0.081 3.919 25 N -0.882 5.882 26 Si 0.872 3.128 27 H -0.270 1.270 28 H -0.280 1.280 29 H -0.265 1.265 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.061 0.939 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.075 0.925 45 H 0.139 0.861 46 H 0.409 0.591 47 H 0.141 0.859 48 H 0.144 0.856 49 H 0.167 0.833 50 H 0.049 0.951 51 H 0.040 0.960 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.449 21.567 -7.031 23.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.415 4.415 3 C -0.192 4.192 4 C -0.192 4.192 5 Si 1.407 2.593 6 C -0.607 4.607 7 C -0.602 4.602 8 O -0.509 6.509 9 C 0.111 3.889 10 C -0.165 4.165 11 C -0.116 4.116 12 C 0.378 3.622 13 O -0.405 6.405 14 O -0.325 6.325 15 C -0.059 4.059 16 C -0.005 4.005 17 C -0.116 4.116 18 C -0.246 4.246 19 C -0.050 4.050 20 N -0.115 5.115 21 C 0.085 3.915 22 C -0.588 4.588 23 H 0.101 0.899 24 C -0.124 4.124 25 N -0.518 5.518 26 Si 0.698 3.302 27 H -0.195 1.195 28 H -0.205 1.205 29 H -0.189 1.189 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.091 0.909 42 H 0.093 0.907 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.156 0.844 46 H 0.267 0.733 47 H 0.159 0.841 48 H 0.162 0.838 49 H 0.185 0.815 50 H 0.067 0.933 51 H 0.058 0.942 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.029 20.777 -7.013 22.743 hybrid contribution 0.559 0.128 1.194 1.325 sum -5.470 20.905 -5.818 22.378 Atomic orbital electron populations 1.21523 0.93902 1.02170 1.01583 1.25706 1.00591 1.02495 1.12684 1.21541 1.00865 0.94923 1.01867 1.21519 1.00804 1.00401 0.96445 0.77133 0.64112 0.52988 0.65035 1.26992 1.06774 1.08853 1.18131 1.26985 1.23895 1.03880 1.05415 1.83743 1.77633 1.44736 1.44820 1.16765 0.91558 0.95314 0.85283 1.20662 1.01355 1.03014 0.91494 1.18114 0.95910 1.05049 0.92523 1.20755 0.78878 0.75262 0.87340 1.90912 1.71576 1.40779 1.37197 1.84581 1.34894 1.67560 1.45503 1.20192 0.91797 0.96909 0.97033 1.17691 0.89385 0.98355 0.95056 1.19387 0.95495 1.01490 0.95258 1.21413 0.95821 1.07742 0.99611 1.21960 1.00375 0.97635 0.85020 1.44475 1.16813 1.37636 1.12533 1.20165 0.91537 0.90334 0.89458 1.21188 1.19587 0.89449 1.28610 0.89894 1.24830 0.96748 0.94740 0.96072 1.69870 1.41021 1.00484 1.40453 0.86912 0.82685 0.78656 0.81920 1.19500 1.20498 1.18929 0.92658 0.92951 0.92020 0.92451 0.92700 0.92563 0.91963 0.92988 0.92528 0.90718 0.91016 0.90941 0.90688 0.91431 0.90631 0.84366 0.73309 0.84116 0.83817 0.81530 0.93322 0.94243 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.14 7.85 37.16 0.29 -0.85 16 2 C -0.37 -3.21 0.53 -90.62 -0.05 -3.25 16 3 C -0.13 -1.00 7.85 37.16 0.29 -0.71 16 4 C -0.13 -1.18 7.85 37.16 0.29 -0.89 16 5 Si 1.27 12.90 8.27 -169.99 -1.41 11.50 16 6 C -0.50 -5.01 8.31 101.05 0.84 -4.17 16 7 C -0.50 -5.31 7.46 101.05 0.75 -4.56 16 8 O -0.56 -7.46 8.52 -19.42 -0.17 -7.62 16 9 C 0.15 2.41 4.62 -39.37 -0.18 2.23 16 10 C -0.15 -2.21 8.23 -39.39 -0.32 -2.54 16 11 C -0.11 -1.91 5.87 -104.98 -0.62 -2.53 16 12 C 0.53 8.47 8.26 34.49 0.28 8.75 16 13 O -0.52 -9.71 17.09 -19.28 -0.33 -10.04 16 14 O -0.51 -6.00 12.64 -40.64 -0.51 -6.51 16 15 C -0.04 -0.75 9.52 -38.99 -0.37 -1.12 16 16 C 0.10 2.03 6.80 -84.02 -0.57 1.46 16 17 C -0.11 -1.90 5.24 -104.94 -0.55 -2.45 16 18 C -0.22 -3.48 9.78 -37.71 -0.37 -3.85 16 19 C 0.08 1.36 11.27 -16.75 -0.19 1.17 16 20 N -0.44 -8.73 2.76 -115.74 -0.32 -9.05 16 21 C 0.20 4.49 4.82 -5.19 -0.03 4.46 16 22 C -0.55 -14.66 9.94 -34.44 -0.34 -15.01 16 23 H 0.08 2.50 8.06 -52.49 -0.42 2.07 16 24 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 25 N -0.88 -25.77 13.96 55.43 0.77 -24.99 16 26 Si 0.87 19.72 27.47 -169.99 -4.67 15.05 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 30 H 0.05 0.42 7.79 -51.93 -0.40 0.02 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.56 7.97 -51.93 -0.41 0.14 16 33 H 0.06 0.39 7.79 -51.93 -0.40 -0.02 16 34 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.06 0.37 7.79 -51.93 -0.40 -0.03 16 36 H 0.06 0.59 7.96 -51.93 -0.41 0.17 16 37 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 0.46 7.79 -51.93 -0.40 0.05 16 39 H 0.07 0.82 7.37 -51.93 -0.38 0.44 16 40 H 0.07 0.61 7.79 -51.93 -0.40 0.20 16 41 H 0.07 0.67 7.79 -51.93 -0.40 0.27 16 42 H 0.07 0.77 7.10 -51.93 -0.37 0.40 16 43 H 0.07 0.61 7.79 -51.93 -0.40 0.20 16 44 H 0.07 0.94 7.19 -51.93 -0.37 0.57 16 45 H 0.14 1.82 7.58 -52.49 -0.40 1.42 16 46 H 0.41 2.79 9.11 45.56 0.42 3.21 16 47 H 0.14 2.86 7.62 -52.49 -0.40 2.46 16 48 H 0.14 1.87 7.51 -52.49 -0.39 1.48 16 49 H 0.17 2.31 8.06 -52.49 -0.42 1.89 16 50 H 0.05 1.01 7.17 -51.93 -0.37 0.63 16 51 H 0.04 0.85 7.57 -51.93 -0.39 0.46 16 52 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 428.68 15.07 6.46 6.46 Total: -1.00 -32.07 428.68 -8.71 -40.78 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -7.61 Total: 6.20 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: -0.93 Total: -21.76 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.45 Total: -34.04 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -1.01 Total: -24.18 kcal Atomic # 14 Polarization: 32.62 SS G_CDS: -6.08 Total: 26.54 kcal Total LS contribution 6.46 Total: 6.46 kcal Total: -32.07 -8.71 -40.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169900074.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.022 kcal (2) G-P(sol) polarization free energy of solvation -32.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds