Wall clock time and date at job start Tue Mar 31 2020 07:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99922 * 2 1 4 4 H 1.48503 * 109.46999 * 269.99714 * 3 2 1 5 5 H 1.48500 * 109.47285 * 29.99495 * 3 2 1 6 6 H 1.48500 * 109.47168 * 149.99894 * 3 2 1 7 7 C 1.37872 * 119.99788 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00764 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00022 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.47664 * 179.97438 * 9 7 2 11 11 S 1.81395 * 109.47524 * 180.02562 * 10 9 7 12 12 O 1.42102 * 110.54100 * 68.37519 * 11 10 9 13 13 O 1.42093 * 110.54301 * 291.62831 * 11 10 9 14 14 N 1.65595 * 104.45118 * 180.02562 * 11 10 9 15 15 C 1.46534 * 124.97942 * 90.00082 * 14 11 10 16 16 C 1.53741 * 105.18404 * 180.02562 * 15 14 11 17 17 C 1.51226 * 104.57128 * 359.97438 * 16 15 14 18 18 C 1.38258 * 130.94426 * 180.28791 * 17 16 15 19 19 C 1.38260 * 120.18911 * 180.14470 * 18 17 16 20 20 Br 1.89099 * 120.08901 * 179.74724 * 19 18 17 21 21 C 1.38399 * 119.82719 * 359.54223 * 19 18 17 22 22 C 1.37989 * 120.18859 * 0.22813 * 21 19 18 23 23 F 1.35097 * 119.87203 * 180.02562 * 22 21 19 24 24 C 1.38481 * 108.56441 * 0.02562 * 17 16 15 25 25 H 0.96996 * 120.00260 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.47180 * 60.00100 * 9 7 2 27 27 H 1.09002 * 109.47275 * 300.00338 * 9 7 2 28 28 H 1.09005 * 109.46708 * 59.99850 * 10 9 7 29 29 H 1.09002 * 109.47083 * 300.00495 * 10 9 7 30 30 H 1.09006 * 110.30057 * 61.07311 * 15 14 11 31 31 H 1.09002 * 110.38623 * 298.96887 * 15 14 11 32 32 H 1.09002 * 110.41836 * 241.22476 * 16 15 14 33 33 H 1.09002 * 110.42111 * 118.76966 * 16 15 14 34 34 H 1.08007 * 119.90459 * 359.96729 * 18 17 16 35 35 H 1.08001 * 119.90694 * 180.24886 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0023 11 16 5.8355 -2.6366 0.0038 12 8 6.3331 -2.1455 1.2409 13 8 6.3351 -2.1468 -1.2330 14 7 6.2487 -4.2401 0.0042 15 6 6.4593 -5.0537 -1.1962 16 6 6.8192 -6.4546 -0.6751 17 6 6.7840 -6.3211 0.8308 18 6 7.0268 -7.2470 1.8284 19 6 6.9270 -6.8793 3.1575 20 35 7.2528 -8.1498 4.5197 21 6 6.5921 -5.5779 3.4884 22 6 6.3534 -4.6491 2.4962 23 9 6.0275 -3.3803 2.8264 24 6 6.4476 -5.0162 1.1500 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6801 0.8912 27 1 3.8752 -0.6804 -0.8888 28 1 3.6585 -3.1510 -0.8875 29 1 3.6578 -3.1498 0.8924 30 1 7.2793 -4.6480 -1.7889 31 1 5.5473 -5.0949 -1.7918 32 1 7.8174 -6.7393 -1.0080 33 1 6.0831 -7.1856 -1.0097 34 1 7.2925 -8.2612 1.5687 35 1 6.5177 -5.2882 4.5262 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178146110.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:04:51 Heat of formation + Delta-G solvation = -72.769743 kcal Electronic energy + Delta-G solvation = -24355.361665 eV Core-core repulsion = 20441.779537 eV Total energy + Delta-G solvation = -3913.582128 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 376.988 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -48.68914 -40.70027 -37.08088 -36.88070 -35.78565 -34.04553 -32.33546 -31.84290 -31.56768 -29.42461 -28.74134 -26.08347 -23.51248 -22.92537 -21.96425 -21.23708 -19.32316 -18.27871 -17.26465 -16.92714 -16.76795 -16.47391 -15.72770 -15.50746 -15.40370 -15.11968 -14.84899 -14.36284 -13.95654 -13.79172 -13.42154 -13.08038 -12.87738 -12.63291 -12.56491 -12.25277 -11.98699 -11.93901 -11.82628 -11.77243 -11.59354 -11.33605 -11.32106 -11.23308 -10.61717 -10.52253 -10.30660 -10.15715 -9.72141 -9.43840 -9.03719 -8.70888 -8.14128 -6.21021 -4.23118 0.25670 0.69925 0.78934 1.25915 2.46262 3.06657 3.23175 3.30920 3.34823 3.77661 3.90353 3.92761 4.03999 4.31717 4.36970 4.61459 4.73350 4.74412 4.82246 5.09201 5.14983 5.26871 5.30099 5.38326 5.41765 5.48634 5.54343 5.69363 5.80818 5.89802 6.01029 6.14925 6.54996 6.71228 6.84943 7.47937 8.30945 8.79238 9.37917 10.91209 Molecular weight = 376.99amu Principal moments of inertia in cm(-1) A = 0.016163 B = 0.002776 C = 0.002570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.914939 B =10083.630444 C =10892.087777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.868 3.132 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.521 4.521 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.570 4.570 11 S 2.567 3.433 12 O -0.928 6.928 13 O -0.949 6.949 14 N -0.937 5.937 15 C 0.111 3.889 16 C -0.079 4.079 17 C -0.106 4.106 18 C -0.058 4.058 19 C -0.095 4.095 20 Br -0.039 7.039 21 C -0.096 4.096 22 C 0.076 3.924 23 F -0.094 7.094 24 C 0.153 3.847 25 H 0.267 0.733 26 H 0.035 0.965 27 H 0.029 0.971 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.141 0.859 35 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.696 -20.400 4.200 26.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.130 4.130 3 Si 0.694 3.306 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.560 4.560 8 H 0.097 0.903 9 C -0.045 4.045 10 C -0.704 4.704 11 S 2.668 3.332 12 O -0.919 6.919 13 O -0.939 6.939 14 N -0.756 5.756 15 C -0.013 4.013 16 C -0.117 4.117 17 C -0.112 4.112 18 C -0.079 4.079 19 C -0.176 4.176 20 Br 0.046 6.954 21 C -0.117 4.117 22 C 0.052 3.948 23 F -0.072 7.072 24 C 0.053 3.947 25 H 0.077 0.923 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.115 0.885 33 H 0.116 0.884 34 H 0.159 0.841 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 17.274 -19.830 4.592 26.696 hybrid contribution -0.435 1.100 -0.252 1.209 sum 16.839 -18.730 4.340 25.558 Atomic orbital electron populations 1.69872 1.06193 1.27351 1.49695 1.24966 0.94829 0.99146 0.94030 0.86936 0.80759 0.83694 0.79164 1.19611 1.20612 1.18589 1.20796 0.87525 0.95011 1.52646 0.90345 1.19435 1.00076 0.86894 0.98045 1.30250 1.19215 1.09755 1.11181 1.06657 0.80121 0.71547 0.74911 1.93726 1.78947 1.75970 1.43208 1.93568 1.79076 1.76020 1.45257 1.56929 1.79325 1.29597 1.09787 1.21985 1.03272 0.89903 0.86154 1.21133 1.03923 0.97009 0.89638 1.19955 1.03667 0.91602 0.95973 1.20294 0.98610 0.99648 0.89356 1.21202 1.09512 0.93790 0.93091 1.96728 1.94988 1.54821 1.48876 1.20802 1.00094 0.91012 0.99832 1.17217 1.05831 0.81917 0.89811 1.91821 1.89442 1.33301 1.92642 1.18227 0.98360 0.91981 0.86154 0.92280 0.94667 0.95294 0.85414 0.85353 0.88927 0.89254 0.88534 0.88353 0.84086 0.82994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 33. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.82 13.96 55.43 0.77 -26.05 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.87 21.33 27.47 -169.99 -4.67 16.66 16 4 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.45 9.66 -34.44 -0.33 -14.79 16 8 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 9 C 0.00 -0.12 4.05 -27.88 -0.11 -0.23 16 10 C -0.57 -10.52 6.12 37.16 0.23 -10.30 16 11 S 2.57 44.78 5.48 -107.50 -0.59 44.19 16 12 O -0.93 -18.50 13.58 -57.54 -0.78 -19.28 16 13 O -0.95 -18.20 17.56 -57.54 -1.01 -19.21 16 14 N -0.94 -12.78 3.40 -58.04 -0.20 -12.98 16 15 C 0.11 1.07 7.08 -3.64 -0.03 1.04 16 16 C -0.08 -0.56 6.94 -27.24 -0.19 -0.75 16 17 C -0.11 -1.06 6.23 -104.27 -0.65 -1.71 16 18 C -0.06 -0.52 9.78 -39.57 -0.39 -0.90 16 19 C -0.09 -0.94 6.23 -39.51 -0.25 -1.19 16 20 Br -0.04 -0.34 33.71 -68.01 -2.29 -2.63 16 21 C -0.10 -1.11 9.74 -39.61 -0.39 -1.49 16 22 C 0.08 1.09 7.21 -39.07 -0.28 0.81 16 23 F -0.09 -1.63 13.02 2.25 0.03 -1.61 16 24 C 0.15 2.02 6.60 -83.53 -0.55 1.47 16 25 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 26 H 0.04 0.83 7.20 -51.93 -0.37 0.46 16 27 H 0.03 0.67 7.57 -51.93 -0.39 0.27 16 28 H 0.13 2.08 8.14 -51.92 -0.42 1.66 16 29 H 0.13 2.24 8.14 -51.92 -0.42 1.82 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 35 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 330.06 15.07 4.97 4.97 Total: -1.00 -34.11 330.06 -10.53 -44.64 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -3.74 Total: -2.68 kcal Atomic # 6 Polarization: -23.01 SS G_CDS: -3.03 Total: -26.04 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.58 Total: -39.03 kcal Atomic # 8 Polarization: -36.70 SS G_CDS: -1.79 Total: -38.49 kcal Atomic # 9 Polarization: -1.63 SS G_CDS: 0.03 Total: -1.61 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Atomic # 16 Polarization: 44.78 SS G_CDS: -0.59 Total: 44.19 kcal Atomic # 35 Polarization: -0.34 SS G_CDS: -2.29 Total: -2.63 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.11 -10.53 -44.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178146110.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.131 kcal (2) G-P(sol) polarization free energy of solvation -34.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds