Wall clock time and date at job start Tue Mar 31 2020 06:31:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47114 * 2 1 4 4 C 1.35672 * 117.00111 * 179.97438 * 3 2 1 5 5 C 1.38923 * 119.68366 * 180.02562 * 4 3 2 6 6 C 1.38386 * 119.10706 * 180.02562 * 5 4 3 7 7 C 1.38824 * 118.48736 * 359.97438 * 6 5 4 8 8 S 1.76200 * 120.35486 * 179.97438 * 7 6 5 9 9 O 1.42107 * 106.40226 * 329.91182 * 8 7 6 10 10 O 1.42102 * 106.40483 * 196.99680 * 8 7 6 11 11 N 1.65595 * 107.22029 * 83.45070 * 8 7 6 12 12 C 1.46492 * 120.00399 * 271.08230 * 11 8 7 13 13 C 1.50693 * 109.47221 * 264.99899 * 12 11 8 14 14 H 1.08001 * 120.00153 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00101 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00014 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00262 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46699 * 59.99975 * 17 15 13 19 19 H 1.48497 * 109.47127 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46687 * 300.00035 * 17 15 13 21 21 C 1.39683 * 119.99540 * 91.07925 * 11 8 7 22 22 C 1.38927 * 120.07450 * 333.89854 * 21 11 8 23 23 C 1.38084 * 119.92156 * 180.02562 * 22 21 11 24 24 C 1.38308 * 120.07775 * 359.97177 * 23 22 21 25 25 C 1.38262 * 120.14420 * 359.97438 * 24 23 22 26 26 C 1.50710 * 119.95858 * 180.02562 * 25 24 23 27 27 C 1.38125 * 120.08039 * 0.04732 * 25 24 23 28 28 C 1.38050 * 119.29185 * 0.25893 * 7 6 5 29 29 N 1.31966 * 120.83083 * 359.44787 * 28 7 6 30 30 H 1.09000 * 109.47071 * 59.99947 * 1 2 3 31 31 H 1.09001 * 109.47240 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47116 * 299.99930 * 1 2 3 33 33 H 1.09000 * 109.47369 * 240.00240 * 2 1 3 34 34 H 1.09000 * 109.47071 * 120.00053 * 2 1 3 35 35 H 1.07990 * 120.44844 * 359.97438 * 5 4 3 36 36 H 1.08004 * 120.74913 * 180.02562 * 6 5 4 37 37 H 1.09002 * 109.47064 * 24.99999 * 12 11 8 38 38 H 1.09004 * 109.47269 * 144.99587 * 12 11 8 39 39 H 0.96997 * 120.00250 * 180.02562 * 16 15 13 40 40 H 1.07997 * 120.04103 * 0.03904 * 22 21 11 41 41 H 1.08004 * 119.96346 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.92595 * 180.02562 * 24 23 22 43 43 H 1.08998 * 109.46906 * 270.02719 * 26 25 24 44 44 H 1.09000 * 109.46896 * 30.02993 * 26 25 24 45 45 H 1.08998 * 109.46650 * 150.02220 * 26 25 24 46 46 H 1.07998 * 120.03948 * 179.69790 * 27 25 24 47 47 H 1.07991 * 119.58374 * 179.72204 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5251 0.0005 5 6 3.8752 2.8117 0.0011 6 6 5.2489 2.9793 0.0011 7 6 6.0539 1.8483 0.0011 8 16 7.8090 2.0045 0.0004 9 8 8.1039 3.2148 -0.6834 10 8 8.3241 0.7414 -0.3979 11 7 8.2819 2.2280 1.5716 12 6 8.3564 3.5808 2.1288 13 6 9.7672 4.0965 2.0086 14 1 10.5318 3.4785 1.5614 15 6 10.0818 5.3577 2.4685 16 7 9.1504 6.1108 3.0116 17 14 11.8308 5.9967 2.3201 18 1 12.2268 6.0276 0.8892 19 1 11.9063 7.3681 2.8848 20 1 12.7497 5.1023 3.0690 21 6 8.6096 1.1265 2.3657 22 6 8.0594 -0.1190 2.0898 23 6 8.3851 -1.2055 2.8772 24 6 9.2585 -1.0552 3.9390 25 6 9.8087 0.1828 4.2155 26 6 10.7604 0.3418 5.3733 27 6 9.4868 1.2740 3.4323 28 6 5.4647 0.5998 -0.0044 29 7 4.1512 0.4719 0.0014 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.2194 3.6696 0.0007 36 1 5.6847 3.9675 0.0020 37 1 7.6815 4.2375 1.5799 38 1 8.0663 3.5576 3.1792 39 1 9.3715 6.9982 3.3348 40 1 7.3778 -0.2373 1.2604 41 1 7.9575 -2.1740 2.6636 42 1 9.5119 -1.9067 4.5529 43 1 10.1989 0.5924 6.2733 44 1 11.3007 -0.5918 5.5302 45 1 11.4698 1.1396 5.1534 46 1 9.9132 2.2417 3.6518 47 1 6.0864 -0.2831 -0.0090 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184492755.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:56 Heat of formation + Delta-G solvation = -45.052026 kcal Electronic energy + Delta-G solvation = -32669.863639 eV Core-core repulsion = 28331.356038 eV Total energy + Delta-G solvation = -4338.507601 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.129 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.82728 -39.23578 -38.29934 -36.92031 -35.75363 -35.42510 -32.86764 -32.74904 -32.42131 -31.94853 -30.31164 -29.31830 -27.38210 -26.21558 -24.67116 -23.89951 -23.11460 -22.55114 -21.49308 -21.27137 -18.85569 -18.78957 -17.80931 -17.22024 -16.87759 -16.61658 -16.52114 -16.08815 -15.58933 -14.85962 -14.66536 -14.54690 -14.30726 -14.22053 -14.07793 -13.83203 -13.50472 -13.37062 -13.19766 -12.87500 -12.82061 -12.70150 -12.62939 -12.19321 -11.98398 -11.90996 -11.87725 -11.70555 -11.53369 -11.32835 -11.14224 -11.06559 -11.03241 -10.90625 -10.72215 -10.48601 -10.39837 -10.23352 -9.99465 -9.81665 -9.21471 -8.97274 -8.56231 -8.26922 -7.47381 -6.19001 -4.24405 0.48536 0.79927 1.02868 1.79468 1.92002 2.67617 3.19322 3.28229 3.32118 3.37027 3.53480 3.96089 4.05686 4.30701 4.34886 4.46610 4.68548 4.69191 4.75816 4.85963 5.04423 5.07498 5.14598 5.17730 5.21570 5.30578 5.37701 5.44992 5.50041 5.55570 5.62721 5.70871 5.74726 5.77311 5.81428 5.91062 6.12523 6.17856 6.18663 6.37211 6.55831 6.80890 6.90339 6.91662 6.97965 7.09605 7.23630 7.27422 7.47647 7.67543 7.77995 7.99198 8.77819 9.41382 10.89173 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.009108 B = 0.003401 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.514653 B = 8231.465243 C =10006.193949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.302 6.302 4 C 0.364 3.636 5 C -0.208 4.208 6 C 0.062 3.938 7 C -0.769 4.769 8 S 2.691 3.309 9 O -0.928 6.928 10 O -0.958 6.958 11 N -0.923 5.923 12 C 0.246 3.754 13 C -0.534 4.534 14 H 0.065 0.935 15 C 0.068 3.932 16 N -0.891 5.891 17 Si 0.897 3.103 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.274 1.274 21 C 0.194 3.806 22 C -0.178 4.178 23 C -0.090 4.090 24 C -0.157 4.157 25 C -0.067 4.067 26 C -0.112 4.112 27 C -0.131 4.131 28 C 0.239 3.761 29 N -0.552 5.552 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.152 0.848 36 H 0.162 0.838 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.267 0.733 40 H 0.117 0.883 41 H 0.120 0.880 42 H 0.115 0.885 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.068 0.932 46 H 0.152 0.848 47 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.491 -12.230 -0.881 16.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 O -0.208 6.208 4 C 0.186 3.814 5 C -0.229 4.229 6 C 0.036 3.964 7 C -0.856 4.856 8 S 2.779 3.221 9 O -0.918 6.918 10 O -0.948 6.948 11 N -0.748 5.748 12 C 0.126 3.874 13 C -0.573 4.573 14 H 0.083 0.917 15 C -0.135 4.135 16 N -0.529 5.529 17 Si 0.724 3.276 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.199 1.199 21 C 0.097 3.903 22 C -0.200 4.200 23 C -0.109 4.109 24 C -0.177 4.177 25 C -0.068 4.068 26 C -0.168 4.168 27 C -0.153 4.153 28 C 0.081 3.919 29 N -0.276 5.276 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.170 0.830 36 H 0.180 0.820 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.133 0.867 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.169 0.831 47 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -11.716 -12.587 -1.589 17.269 hybrid contribution 0.504 1.073 0.171 1.198 sum -11.212 -11.514 -1.418 16.134 Atomic orbital electron populations 1.21828 0.92787 1.03020 1.03407 1.22713 0.94922 0.80735 1.02962 1.86269 1.16729 1.31226 1.86613 1.20078 0.83986 0.90260 0.87081 1.21167 0.95887 0.95968 1.09888 1.21265 0.92170 0.98634 0.84315 1.32137 1.29884 1.00620 1.22981 1.02287 0.73146 0.73757 0.72877 1.93634 1.82336 1.45624 1.70188 1.93563 1.77385 1.42929 1.80955 1.55695 1.75506 1.13706 1.29939 1.19396 0.98757 0.73391 0.95835 1.21336 0.94438 1.00663 1.40875 0.91711 1.24896 0.97800 0.96231 0.94615 1.69897 1.33044 1.10310 1.39697 0.86563 0.84227 0.77946 0.78875 1.19825 1.21097 1.19935 1.17519 0.94248 0.85832 0.92715 1.20991 1.03979 0.92675 1.02331 1.20695 0.97786 0.97544 0.94859 1.20823 1.00651 0.96819 0.99371 1.19774 0.97433 0.93033 0.96596 1.20766 0.97892 1.02256 0.95916 1.21273 0.97964 1.00499 0.95558 1.22246 0.89365 0.95657 0.84622 1.67449 1.06285 1.32798 1.21093 0.91603 0.90147 0.91534 0.91275 0.91191 0.83028 0.82040 0.93623 0.93558 0.92375 0.86542 0.86249 0.86727 0.91407 0.92015 0.91259 0.83050 0.80645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.06 0.59 6.03 37.16 0.22 0.81 16 3 O -0.30 -3.69 10.12 -18.72 -0.19 -3.87 16 4 C 0.36 5.05 7.49 -17.12 -0.13 4.92 16 5 C -0.21 -2.78 10.04 -39.27 -0.39 -3.17 16 6 C 0.06 0.93 9.65 -39.31 -0.38 0.55 16 7 C -0.77 -12.48 5.95 -39.43 -0.23 -12.71 16 8 S 2.69 52.37 5.10 -107.50 -0.55 51.83 16 9 O -0.93 -20.80 16.55 -57.17 -0.95 -21.74 16 10 O -0.96 -18.96 14.34 -57.17 -0.82 -19.78 16 11 N -0.92 -19.13 2.98 -59.81 -0.18 -19.31 16 12 C 0.25 5.82 4.47 -5.20 -0.02 5.80 16 13 C -0.53 -14.01 7.86 -34.44 -0.27 -14.28 16 14 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 15 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 16 N -0.89 -24.44 13.29 55.43 0.74 -23.70 16 17 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 18 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 19 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 C 0.19 3.79 6.07 -83.79 -0.51 3.28 16 22 C -0.18 -3.05 8.46 -39.38 -0.33 -3.39 16 23 C -0.09 -1.34 10.04 -39.61 -0.40 -1.73 16 24 C -0.16 -2.28 9.70 -39.55 -0.38 -2.66 16 25 C -0.07 -1.08 5.88 -104.65 -0.62 -1.70 16 26 C -0.11 -1.46 10.01 36.01 0.36 -1.10 16 27 C -0.13 -2.51 8.71 -39.38 -0.34 -2.85 16 28 C 0.24 3.56 9.83 -17.56 -0.17 3.38 16 29 N -0.55 -7.94 9.22 -13.33 -0.12 -8.06 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 34 H 0.07 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.16 2.30 7.86 -52.48 -0.41 1.89 16 37 H 0.05 1.10 7.64 -51.93 -0.40 0.71 16 38 H 0.05 1.12 7.79 -51.93 -0.40 0.71 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 40 H 0.12 1.84 3.46 -52.49 -0.18 1.66 16 41 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 42 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 43 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 45 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 46 H 0.15 3.17 6.17 -52.49 -0.32 2.85 16 47 H 0.18 2.31 5.96 -52.49 -0.31 1.99 16 LS Contribution 402.48 15.07 6.07 6.07 Total: -1.00 -31.46 402.48 -10.56 -42.01 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -6.22 Total: 4.55 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -3.31 Total: -23.78 kcal Atomic # 7 Polarization: -51.51 SS G_CDS: 0.44 Total: -51.07 kcal Atomic # 8 Polarization: -43.44 SS G_CDS: -1.96 Total: -45.40 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: 52.37 SS G_CDS: -0.55 Total: 51.83 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.46 -10.56 -42.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184492755.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.038 kcal (2) G-P(sol) polarization free energy of solvation -31.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds