Wall clock time and date at job start Tue Mar 31 2020 06:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42900 * 109.47114 * 2 1 4 4 C 1.35672 * 117.00111 * 179.97438 * 3 2 1 5 5 C 1.38923 * 119.68366 * 180.02562 * 4 3 2 6 6 C 1.38386 * 119.10706 * 180.02562 * 5 4 3 7 7 C 1.38824 * 118.48736 * 359.97438 * 6 5 4 8 8 S 1.76200 * 120.35486 * 179.97438 * 7 6 5 9 9 O 1.42107 * 106.40226 * 329.91182 * 8 7 6 10 10 O 1.42102 * 106.40483 * 196.99680 * 8 7 6 11 11 N 1.65595 * 107.22029 * 83.45070 * 8 7 6 12 12 C 1.46492 * 120.00399 * 271.08230 * 11 8 7 13 13 C 1.50693 * 109.47221 * 264.99899 * 12 11 8 14 14 H 1.08001 * 120.00153 * 0.02562 * 13 12 11 15 15 C 1.37879 * 120.00101 * 179.97438 * 13 12 11 16 16 N 1.31519 * 120.00014 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00262 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46699 * 59.99975 * 17 15 13 19 19 H 1.48497 * 109.47127 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.46687 * 300.00035 * 17 15 13 21 21 C 1.39683 * 119.99540 * 91.07925 * 11 8 7 22 22 C 1.38927 * 120.07450 * 333.89854 * 21 11 8 23 23 C 1.38084 * 119.92156 * 180.02562 * 22 21 11 24 24 C 1.38308 * 120.07775 * 359.97177 * 23 22 21 25 25 C 1.38262 * 120.14420 * 359.97438 * 24 23 22 26 26 C 1.50710 * 119.95858 * 180.02562 * 25 24 23 27 27 C 1.38125 * 120.08039 * 0.04732 * 25 24 23 28 28 C 1.38050 * 119.29185 * 0.25893 * 7 6 5 29 29 N 1.31966 * 120.83083 * 359.44787 * 28 7 6 30 30 H 1.09000 * 109.47071 * 59.99947 * 1 2 3 31 31 H 1.09001 * 109.47240 * 179.97438 * 1 2 3 32 32 H 1.08992 * 109.47116 * 299.99930 * 1 2 3 33 33 H 1.09000 * 109.47369 * 240.00240 * 2 1 3 34 34 H 1.09000 * 109.47071 * 120.00053 * 2 1 3 35 35 H 1.07990 * 120.44844 * 359.97438 * 5 4 3 36 36 H 1.08004 * 120.74913 * 180.02562 * 6 5 4 37 37 H 1.09002 * 109.47064 * 24.99999 * 12 11 8 38 38 H 1.09004 * 109.47269 * 144.99587 * 12 11 8 39 39 H 0.96997 * 120.00250 * 180.02562 * 16 15 13 40 40 H 1.07997 * 120.04103 * 0.03904 * 22 21 11 41 41 H 1.08004 * 119.96346 * 179.97438 * 23 22 21 42 42 H 1.07997 * 119.92595 * 180.02562 * 24 23 22 43 43 H 1.08998 * 109.46906 * 270.02719 * 26 25 24 44 44 H 1.09000 * 109.46896 * 30.02993 * 26 25 24 45 45 H 1.08998 * 109.46650 * 150.02220 * 26 25 24 46 46 H 1.07998 * 120.03948 * 179.69790 * 27 25 24 47 47 H 1.07991 * 119.58374 * 179.72204 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3514 1.5251 0.0005 5 6 3.8752 2.8117 0.0011 6 6 5.2489 2.9793 0.0011 7 6 6.0539 1.8483 0.0011 8 16 7.8090 2.0045 0.0004 9 8 8.1039 3.2148 -0.6834 10 8 8.3241 0.7414 -0.3979 11 7 8.2819 2.2280 1.5716 12 6 8.3564 3.5808 2.1288 13 6 9.7672 4.0965 2.0086 14 1 10.5318 3.4785 1.5614 15 6 10.0818 5.3577 2.4685 16 7 9.1504 6.1108 3.0116 17 14 11.8308 5.9967 2.3201 18 1 12.2268 6.0276 0.8892 19 1 11.9063 7.3681 2.8848 20 1 12.7497 5.1023 3.0690 21 6 8.6096 1.1265 2.3657 22 6 8.0594 -0.1190 2.0898 23 6 8.3851 -1.2055 2.8772 24 6 9.2585 -1.0552 3.9390 25 6 9.8087 0.1828 4.2155 26 6 10.7604 0.3418 5.3733 27 6 9.4868 1.2740 3.4323 28 6 5.4647 0.5998 -0.0044 29 7 4.1512 0.4719 0.0014 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.2194 3.6696 0.0007 36 1 5.6847 3.9675 0.0020 37 1 7.6815 4.2375 1.5799 38 1 8.0663 3.5576 3.1792 39 1 9.3715 6.9982 3.3348 40 1 7.3778 -0.2373 1.2604 41 1 7.9575 -2.1740 2.6636 42 1 9.5119 -1.9067 4.5529 43 1 10.1989 0.5924 6.2733 44 1 11.3007 -0.5918 5.5302 45 1 11.4698 1.1396 5.1534 46 1 9.9132 2.2417 3.6518 47 1 6.0864 -0.2831 -0.0090 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184492755.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:54 Heat of formation + Delta-G solvation = -65.288989 kcal Electronic energy + Delta-G solvation = -32670.741179 eV Core-core repulsion = 28331.356038 eV Total energy + Delta-G solvation = -4339.385141 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.129 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.91734 -40.57504 -39.31229 -38.52389 -37.27854 -37.04610 -34.74918 -33.90184 -33.35298 -33.17680 -31.31329 -30.78647 -29.05549 -27.54516 -25.66226 -25.06323 -24.93422 -23.41028 -22.90307 -22.59528 -20.24346 -19.89237 -19.20944 -18.77930 -18.27193 -18.17565 -17.66020 -17.48376 -16.96363 -16.42655 -16.00686 -15.88480 -15.58929 -15.24201 -15.22674 -15.04190 -14.83334 -14.74189 -14.43682 -14.35061 -13.92295 -13.82278 -13.63458 -13.52053 -13.42780 -13.35457 -13.23085 -13.02640 -12.98600 -12.71825 -12.64236 -12.58881 -12.39325 -12.19537 -12.06301 -12.04912 -11.90242 -11.62955 -11.38142 -11.08089 -10.84968 -10.61808 -10.08779 -9.55512 -8.91019 -8.22991 -6.35079 -0.89378 -0.52762 -0.11688 0.51231 0.61716 1.39608 1.42224 1.49357 1.70494 1.77876 2.28869 2.38915 2.59311 2.90708 2.97587 3.05247 3.09802 3.59295 3.73354 3.75534 3.81864 4.02946 4.03461 4.10568 4.18089 4.31588 4.34458 4.40928 4.47154 4.56081 4.56650 4.61405 4.77442 4.89454 4.90831 4.91436 4.95854 5.04911 5.06684 5.09870 5.19969 5.21121 5.38607 5.54817 5.62458 5.72992 5.81072 5.89387 5.90110 6.00000 6.30551 6.34497 6.69963 7.32860 8.83905 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.009108 B = 0.003401 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3073.514653 B = 8231.465243 C =10006.193949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.302 6.302 4 C 0.364 3.636 5 C -0.202 4.202 6 C 0.048 3.952 7 C -0.774 4.774 8 S 2.698 3.302 9 O -0.969 6.969 10 O -0.966 6.966 11 N -0.930 5.930 12 C 0.264 3.736 13 C -0.544 4.544 14 H 0.052 0.948 15 C 0.023 3.977 16 N -0.918 5.918 17 Si 0.950 3.050 18 H -0.277 1.277 19 H -0.275 1.275 20 H -0.264 1.264 21 C 0.163 3.837 22 C -0.190 4.190 23 C -0.084 4.084 24 C -0.148 4.148 25 C -0.071 4.071 26 C -0.110 4.110 27 C -0.162 4.162 28 C 0.242 3.758 29 N -0.551 5.551 30 H 0.067 0.933 31 H 0.102 0.898 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.180 0.820 36 H 0.160 0.840 37 H 0.034 0.966 38 H 0.032 0.968 39 H 0.269 0.731 40 H 0.125 0.875 41 H 0.159 0.841 42 H 0.155 0.845 43 H 0.079 0.921 44 H 0.090 0.910 45 H 0.055 0.945 46 H 0.120 0.880 47 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.633 -14.850 -0.207 19.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.022 4.022 3 O -0.208 6.208 4 C 0.185 3.815 5 C -0.223 4.223 6 C 0.023 3.977 7 C -0.865 4.865 8 S 2.792 3.208 9 O -0.959 6.959 10 O -0.957 6.957 11 N -0.755 5.755 12 C 0.142 3.858 13 C -0.583 4.583 14 H 0.070 0.930 15 C -0.178 4.178 16 N -0.557 5.557 17 Si 0.775 3.225 18 H -0.202 1.202 19 H -0.200 1.200 20 H -0.189 1.189 21 C 0.067 3.933 22 C -0.211 4.211 23 C -0.103 4.103 24 C -0.166 4.166 25 C -0.072 4.072 26 C -0.167 4.167 27 C -0.184 4.184 28 C 0.083 3.917 29 N -0.276 5.276 30 H 0.086 0.914 31 H 0.121 0.879 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.197 0.803 36 H 0.178 0.822 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.078 0.922 40 H 0.143 0.857 41 H 0.177 0.823 42 H 0.173 0.827 43 H 0.097 0.903 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.138 0.862 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -12.820 -15.226 -0.901 19.925 hybrid contribution 0.700 1.735 -0.017 1.871 sum -12.120 -13.491 -0.918 18.159 Atomic orbital electron populations 1.21849 0.90495 1.04540 1.03536 1.23023 0.96710 0.79392 1.03040 1.86297 1.15501 1.33044 1.85937 1.20319 0.84754 0.90316 0.86103 1.21412 0.95295 0.96995 1.08566 1.21380 0.93120 0.98345 0.84867 1.31561 1.27271 1.02007 1.25675 1.01638 0.74231 0.72843 0.72111 1.93576 1.83881 1.47278 1.71200 1.93531 1.78530 1.42636 1.80967 1.55508 1.76765 1.13004 1.30263 1.18926 0.97108 0.74953 0.94836 1.21546 0.95445 1.00821 1.40504 0.92983 1.25613 1.01308 0.96465 0.94402 1.69978 1.34603 1.10631 1.40489 0.85724 0.80278 0.77925 0.78585 1.20227 1.20019 1.18887 1.17839 0.95724 0.86362 0.93401 1.21236 1.04282 0.92366 1.03258 1.21212 0.96912 0.98297 0.93836 1.21277 0.99156 0.97078 0.99128 1.20141 0.97555 0.92822 0.96677 1.20821 0.97375 1.03372 0.95095 1.21208 0.99426 1.00478 0.97268 1.22470 0.89824 0.95455 0.83945 1.67519 1.05813 1.32982 1.21257 0.91370 0.87924 0.91488 0.91084 0.91228 0.80311 0.82199 0.94858 0.94990 0.92152 0.85690 0.82312 0.82706 0.90259 0.89099 0.92561 0.86203 0.79131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 10.28 71.98 0.74 -0.86 16 2 C 0.05 0.89 6.03 71.98 0.43 1.32 16 3 O -0.30 -6.77 10.12 -89.89 -0.91 -7.68 16 4 C 0.36 9.53 7.49 84.79 0.63 10.16 16 5 C -0.20 -5.18 10.04 22.47 0.23 -4.95 16 6 C 0.05 1.48 9.65 22.45 0.22 1.69 16 7 C -0.77 -25.50 5.95 22.37 0.13 -25.37 16 8 S 2.70 109.70 5.10 -56.49 -0.29 109.41 16 9 O -0.97 -46.04 16.55 -128.00 -2.12 -48.15 16 10 O -0.97 -39.07 14.34 -128.00 -1.84 -40.91 16 11 N -0.93 -40.73 2.98 -343.15 -1.02 -41.75 16 12 C 0.26 13.30 4.47 85.63 0.38 13.68 16 13 C -0.54 -30.13 7.86 25.60 0.20 -29.93 16 14 H 0.05 2.94 7.81 -2.91 -0.02 2.91 16 15 C 0.02 1.25 5.46 84.65 0.46 1.72 16 16 N -0.92 -52.10 13.29 21.45 0.28 -51.81 16 17 Si 0.95 43.72 29.54 68.60 2.03 45.74 16 18 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 19 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 20 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 21 C 0.16 6.57 6.07 38.21 0.23 6.80 16 22 C -0.19 -6.38 8.46 22.40 0.19 -6.19 16 23 C -0.08 -2.25 10.04 22.25 0.22 -2.02 16 24 C -0.15 -3.79 9.70 22.29 0.22 -3.57 16 25 C -0.07 -2.21 5.88 -19.88 -0.12 -2.33 16 26 C -0.11 -2.70 10.01 71.24 0.71 -1.99 16 27 C -0.16 -6.44 8.71 22.40 0.20 -6.24 16 28 C 0.24 7.00 9.83 84.63 0.83 7.83 16 29 N -0.55 -15.04 9.22 -308.95 -2.85 -17.89 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.07 1.18 8.10 -2.39 -0.02 1.16 16 34 H 0.07 1.19 8.10 -2.39 -0.02 1.17 16 35 H 0.18 3.50 8.06 -2.92 -0.02 3.48 16 36 H 0.16 4.84 7.86 -2.91 -0.02 4.82 16 37 H 0.03 1.74 7.64 -2.39 -0.02 1.72 16 38 H 0.03 1.67 7.79 -2.38 -0.02 1.65 16 39 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 40 H 0.13 3.86 3.46 -2.91 -0.01 3.85 16 41 H 0.16 2.96 8.06 -2.91 -0.02 2.93 16 42 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 43 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.09 1.69 8.08 -2.39 -0.02 1.67 16 45 H 0.06 1.51 8.08 -2.39 -0.02 1.50 16 46 H 0.12 5.44 6.17 -2.91 -0.02 5.42 16 47 H 0.19 4.79 5.96 -2.92 -0.02 4.77 16 Total: -1.00 -70.68 402.48 0.20 -70.48 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 1.00 Total: 22.81 kcal Atomic # 6 Polarization: -46.17 SS G_CDS: 5.91 Total: -40.25 kcal Atomic # 7 Polarization: -107.86 SS G_CDS: -3.58 Total: -111.45 kcal Atomic # 8 Polarization: -91.87 SS G_CDS: -4.86 Total: -96.74 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 16 Polarization: 109.70 SS G_CDS: -0.29 Total: 109.41 kcal Total: -70.68 0.20 -70.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184492755.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.189 kcal (2) G-P(sol) polarization free energy of solvation -70.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds