Wall clock time and date at job start Tue Mar 31 2020 07:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86803 * 119.99740 * 2 1 4 4 H 1.48508 * 109.46962 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47504 * 299.99804 * 3 2 1 6 6 H 1.48502 * 109.47116 * 60.00707 * 3 2 1 7 7 C 1.40046 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99810 * 179.97438 * 7 2 1 9 9 C 1.46374 * 119.99960 * 359.97438 * 7 2 1 10 10 O 1.21689 * 120.00191 * 0.02562 * 9 7 2 11 11 N 1.34773 * 119.99789 * 179.97438 * 9 7 2 12 12 C 1.46503 * 119.99935 * 180.02562 * 11 9 7 13 13 H 1.08997 * 109.47047 * 325.00334 * 12 11 9 14 14 C 1.50703 * 109.47000 * 85.00168 * 12 11 9 15 15 C 1.38265 * 119.98460 * 220.00135 * 14 12 11 16 16 C 1.38230 * 120.05232 * 179.97438 * 15 14 12 17 17 C 1.38221 * 120.01866 * 359.97438 * 16 15 14 18 18 C 1.38437 * 119.97771 * 359.97438 * 17 16 15 19 19 F 1.35096 * 120.02231 * 180.02562 * 18 17 16 20 20 C 1.38170 * 119.98887 * 39.97896 * 14 12 11 21 21 C 1.50696 * 109.47455 * 205.00226 * 12 11 9 22 22 C 1.38260 * 119.99609 * 139.99926 * 21 12 11 23 23 C 1.38225 * 120.02067 * 180.02562 * 22 21 12 24 24 C 1.38238 * 120.00879 * 359.97308 * 23 22 21 25 25 C 1.38311 * 119.99195 * 0.02762 * 24 23 22 26 26 Br 1.89101 * 120.01048 * 179.97438 * 25 24 23 27 27 C 1.38198 * 119.99435 * 319.72718 * 21 12 11 28 28 H 0.97002 * 120.00242 * 359.97438 * 1 2 3 29 29 H 0.96993 * 120.00461 * 0.02562 * 11 9 7 30 30 H 1.07998 * 119.98228 * 359.70181 * 15 14 12 31 31 H 1.07993 * 119.98797 * 179.97438 * 16 15 14 32 32 H 1.08010 * 120.00681 * 179.97438 * 17 16 15 33 33 H 1.08001 * 120.01158 * 0.04483 * 20 14 12 34 34 H 1.07993 * 119.99282 * 359.97438 * 22 21 12 35 35 H 1.07995 * 119.99466 * 180.02562 * 23 22 21 36 36 H 1.07997 * 120.00539 * 180.02562 * 24 23 22 37 37 H 1.08003 * 120.00131 * 359.97438 * 27 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.7007 1.3465 -0.0006 5 1 1.8820 2.3965 -1.2125 6 1 1.8820 2.3964 1.2126 7 6 2.0070 -1.2128 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 -0.0005 11 7 1.9490 -3.6476 -0.0016 12 6 1.2166 -4.9164 -0.0022 13 1 0.3061 -4.8105 0.5876 14 6 0.8577 -5.2886 -1.4177 15 6 -0.3803 -5.8384 -1.6949 16 6 -0.7111 -6.1798 -2.9929 17 6 0.1954 -5.9713 -4.0153 18 6 1.4347 -5.4198 -3.7390 19 9 2.3213 -5.2151 -4.7376 20 6 1.7656 -5.0798 -2.4381 21 6 2.0807 -5.9957 0.5973 22 6 1.5232 -6.9388 1.4406 23 6 2.3155 -7.9287 1.9911 24 6 3.6657 -7.9763 1.6982 25 6 4.2238 -7.0330 0.8547 26 35 6.0709 -7.0973 0.4542 27 6 3.4293 -6.0459 0.2995 28 1 -0.4850 0.8400 0.0004 29 1 2.9190 -3.6476 -0.0020 30 1 -1.0877 -6.0055 -0.8962 31 1 -1.6782 -6.6096 -3.2082 32 1 -0.0632 -6.2385 -5.0293 33 1 2.7327 -4.6506 -2.2212 34 1 0.4686 -6.9017 1.6700 35 1 1.8795 -8.6654 2.6495 36 1 4.2845 -8.7500 2.1281 37 1 3.8637 -5.3119 -0.3631 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188147249.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:03 Heat of formation + Delta-G solvation = -31.382290 kcal Electronic energy + Delta-G solvation = -25356.917365 eV Core-core repulsion = 21445.519074 eV Total energy + Delta-G solvation = -3911.398290 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 377.017 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.61900 -40.04767 -38.54668 -37.15081 -34.41649 -32.52461 -32.32340 -30.74725 -30.49097 -30.25080 -29.25428 -26.81726 -25.20769 -22.81824 -22.47537 -21.96358 -20.85521 -19.48090 -17.75218 -17.21144 -16.59306 -16.11612 -15.86895 -15.44465 -15.34978 -15.22322 -15.04699 -14.41555 -14.07145 -13.74679 -13.63636 -13.47791 -13.18960 -12.98651 -12.69534 -12.19157 -12.10907 -11.86728 -11.49568 -11.42608 -11.13435 -11.10956 -11.00602 -10.92908 -10.69044 -10.52466 -10.34197 -10.23023 -9.03027 -8.90771 -8.76126 -8.62958 -8.38598 -7.76511 -7.68541 -6.24498 -4.70033 1.03026 1.18602 1.46192 1.50868 1.56495 3.10741 3.19505 3.23570 3.53407 3.84541 4.06012 4.47358 4.51932 4.53520 4.70236 4.83498 4.95700 5.03586 5.10863 5.23984 5.29740 5.34847 5.50167 5.54668 5.65362 5.74809 5.78963 5.99176 6.08877 6.12808 6.23159 6.29145 6.35883 6.47992 6.56212 6.71786 6.81274 7.16341 7.38766 7.75846 7.94036 8.24529 8.97536 9.38567 10.52118 10.70103 Molecular weight = 377.02amu Principal moments of inertia in cm(-1) A = 0.007292 B = 0.003818 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3838.907206 B = 7332.294645 C = 8916.728321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.089 3.911 3 Si 0.906 3.094 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.557 3.443 10 O -0.573 6.573 11 N -0.757 5.757 12 C 0.230 3.770 13 H 0.102 0.898 14 C -0.044 4.044 15 C -0.115 4.115 16 C -0.094 4.094 17 C -0.163 4.163 18 C 0.092 3.908 19 F -0.145 7.145 20 C -0.129 4.129 21 C -0.066 4.066 22 C -0.092 4.092 23 C -0.113 4.113 24 C -0.098 4.098 25 C -0.086 4.086 26 Br -0.057 7.057 27 C -0.079 4.079 28 H 0.268 0.732 29 H 0.381 0.619 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.130 0.870 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.622 -17.598 0.463 18.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.131 4.131 3 Si 0.731 3.269 4 H -0.187 1.187 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.579 4.579 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.455 6.455 11 N -0.413 5.413 12 C 0.123 3.877 13 H 0.120 0.880 14 C -0.046 4.046 15 C -0.133 4.133 16 C -0.112 4.112 17 C -0.182 4.182 18 C 0.073 3.927 19 F -0.123 7.123 20 C -0.148 4.148 21 C -0.068 4.068 22 C -0.111 4.111 23 C -0.131 4.131 24 C -0.118 4.118 25 C -0.166 4.166 26 Br 0.029 6.971 27 C -0.099 4.099 28 H 0.079 0.921 29 H 0.214 0.786 30 H 0.145 0.855 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.278 -17.465 0.285 18.561 hybrid contribution 0.695 0.966 -0.196 1.206 sum 6.973 -16.499 0.089 17.912 Atomic orbital electron populations 1.70016 1.07023 1.27245 1.35094 1.25679 0.94614 1.00261 0.92555 0.86338 0.80573 0.81772 0.78255 1.18722 1.20135 1.20118 1.20878 0.93634 0.89172 1.54219 0.91362 1.18244 0.87280 0.82136 0.76216 1.90608 1.13895 1.86424 1.54604 1.46401 1.08482 1.03786 1.82589 1.18314 0.95468 0.83299 0.90624 0.88026 1.20184 0.93285 0.95201 0.95889 1.21040 0.96121 0.99221 0.96946 1.20891 0.98813 0.99308 0.92235 1.21023 0.93179 1.03427 1.00529 1.17662 0.88271 1.01751 0.84977 1.91467 1.67716 1.93116 1.60046 1.20885 1.01480 1.01633 0.90818 1.20058 0.93556 0.96461 0.96707 1.21195 1.00506 0.93805 0.95608 1.21106 0.93121 0.98813 1.00102 1.21062 0.95601 0.97869 0.97220 1.21716 0.90752 1.00531 1.03566 1.96703 1.07656 1.98647 1.94122 1.20955 0.93170 0.97011 0.98794 0.92113 0.78600 0.85511 0.85353 0.85340 0.85139 0.85044 0.85091 0.85256 0.84963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.43 11.83 55.55 0.66 -21.77 16 2 C 0.09 2.43 5.50 -17.37 -0.10 2.34 16 3 Si 0.91 19.93 29.56 -169.99 -5.02 14.91 16 4 H -0.26 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 7 C -0.54 -14.86 9.54 -35.63 -0.34 -15.20 16 8 H 0.07 1.73 7.85 -52.48 -0.41 1.32 16 9 C 0.56 15.00 7.70 -12.99 -0.10 14.90 16 10 O -0.57 -17.53 14.68 5.20 0.08 -17.45 16 11 N -0.76 -15.79 4.26 -57.48 -0.24 -16.04 16 12 C 0.23 4.06 2.38 -70.23 -0.17 3.89 16 13 H 0.10 1.96 7.30 -51.93 -0.38 1.58 16 14 C -0.04 -0.75 4.90 -104.64 -0.51 -1.26 16 15 C -0.11 -1.77 9.67 -39.57 -0.38 -2.15 16 16 C -0.09 -1.30 10.04 -39.59 -0.40 -1.69 16 17 C -0.16 -2.35 10.03 -39.51 -0.40 -2.74 16 18 C 0.09 1.53 7.30 -39.42 -0.29 1.24 16 19 F -0.14 -2.41 17.27 2.25 0.04 -2.37 16 20 C -0.13 -2.24 9.08 -39.52 -0.36 -2.60 16 21 C -0.07 -0.95 4.94 -104.63 -0.52 -1.47 16 22 C -0.09 -1.11 9.67 -39.58 -0.38 -1.50 16 23 C -0.11 -1.16 10.05 -39.59 -0.40 -1.55 16 24 C -0.10 -1.06 9.79 -39.55 -0.39 -1.44 16 25 C -0.09 -1.07 6.22 -39.51 -0.25 -1.32 16 26 Br -0.06 -0.65 33.70 -68.01 -2.29 -2.94 16 27 C -0.08 -1.09 8.58 -39.56 -0.34 -1.43 16 28 H 0.27 7.14 8.29 -40.82 -0.34 6.80 16 29 H 0.38 7.16 6.86 -40.82 -0.28 6.88 16 30 H 0.13 1.72 8.04 -52.49 -0.42 1.30 16 31 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.13 1.53 8.06 -52.48 -0.42 1.10 16 33 H 0.13 2.22 7.24 -52.49 -0.38 1.84 16 34 H 0.13 1.37 8.04 -52.49 -0.42 0.94 16 35 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.13 1.84 6.46 -52.48 -0.34 1.50 16 LS Contribution 350.31 15.07 5.28 5.28 Total: -1.00 -33.01 350.31 -10.28 -43.29 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -3.46 Total: 9.10 kcal Atomic # 6 Polarization: -6.69 SS G_CDS: -5.31 Total: -12.00 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.41 Total: -37.80 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.08 Total: -17.45 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 35 Polarization: -0.65 SS G_CDS: -2.29 Total: -2.94 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.01 -10.28 -43.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188147249.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.903 kcal (2) G-P(sol) polarization free energy of solvation -33.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds