Wall clock time and date at job start Tue Mar 31 2020 07:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86800 * 120.00056 * 2 1 4 4 H 1.48506 * 109.46838 * 270.00194 * 3 2 1 5 5 H 1.48494 * 109.47295 * 29.99973 * 3 2 1 6 6 H 1.48498 * 109.46942 * 150.00230 * 3 2 1 7 7 C 1.40045 * 119.99520 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99582 * 180.02562 * 7 2 1 9 9 C 1.46376 * 120.00458 * 359.97438 * 7 2 1 10 10 O 1.21689 * 119.99793 * 0.02562 * 9 7 2 11 11 N 1.34777 * 119.99824 * 180.02562 * 9 7 2 12 12 C 1.46503 * 119.99444 * 180.02562 * 11 9 7 13 13 H 1.08995 * 109.47578 * 35.00023 * 12 11 9 14 14 C 1.50698 * 109.46956 * 274.99734 * 12 11 9 15 15 C 1.38271 * 119.98983 * 320.25887 * 14 12 11 16 16 C 1.38219 * 120.05279 * 180.25774 * 15 14 12 17 17 C 1.38227 * 120.02402 * 359.48356 * 16 15 14 18 18 C 1.38435 * 119.97416 * 0.26250 * 17 16 15 19 19 F 1.35097 * 120.02437 * 179.97438 * 18 17 16 20 20 C 1.38179 * 119.98470 * 140.00385 * 14 12 11 21 21 C 1.50699 * 109.46876 * 154.99920 * 12 11 9 22 22 C 1.38270 * 119.99616 * 39.72764 * 21 12 11 23 23 C 1.38211 * 120.01896 * 179.72659 * 22 21 12 24 24 C 1.38244 * 120.01327 * 0.54113 * 23 22 21 25 25 C 1.38297 * 119.98786 * 359.73167 * 24 23 22 26 26 Br 1.89095 * 120.01261 * 180.02562 * 25 24 23 27 27 C 1.38200 * 119.99682 * 219.99678 * 21 12 11 28 28 H 0.97005 * 120.00100 * 0.02562 * 1 2 3 29 29 H 0.96998 * 120.00448 * 0.02562 * 11 9 7 30 30 H 1.08000 * 119.97479 * 0.02562 * 15 14 12 31 31 H 1.08002 * 119.99072 * 179.76964 * 16 15 14 32 32 H 1.07999 * 120.01289 * 180.27778 * 17 16 15 33 33 H 1.07994 * 120.01414 * 0.02562 * 20 14 12 34 34 H 1.08004 * 119.98662 * 359.97438 * 22 21 12 35 35 H 1.08004 * 119.99393 * 180.27237 * 23 22 21 36 36 H 1.07996 * 120.00475 * 179.70186 * 24 23 22 37 37 H 1.08001 * 120.00210 * 0.02562 * 27 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 2.4882 2.0464 -1.4002 5 1 1.4383 2.6527 0.7000 6 1 3.5383 1.4401 0.7000 7 6 2.0069 -1.2129 -0.0005 8 1 3.0868 -1.2129 -0.0001 9 6 1.2750 -2.4805 -0.0005 10 8 0.0581 -2.4805 -0.0005 11 7 1.9489 -3.6477 -0.0005 12 6 1.2163 -4.9164 -0.0011 13 1 0.3058 -4.8101 -0.5908 14 6 0.8574 -5.2898 1.4141 15 6 1.7642 -5.0773 2.4361 16 6 1.4384 -5.4242 3.7338 17 6 0.2013 -5.9742 4.0128 18 6 -0.7093 -6.1826 2.9912 19 9 -1.9185 -6.7206 3.2628 20 6 -0.3798 -5.8396 1.6906 21 6 2.0805 -5.9952 -0.6015 22 6 3.4319 -6.0390 -0.3125 23 6 4.2239 -7.0315 -0.8584 24 6 3.6673 -7.9743 -1.7025 25 6 2.3168 -7.9275 -1.9964 26 35 1.5546 -9.2171 -3.1503 27 6 1.5232 -6.9372 -1.4453 28 1 -0.4850 0.8401 -0.0004 29 1 2.9189 -3.6478 -0.0002 30 1 2.7292 -4.6434 2.2197 31 1 2.1488 -5.2613 4.5307 32 1 -0.0547 -6.2411 5.0275 33 1 -1.0893 -6.0020 0.8928 34 1 3.8680 -5.2998 0.3432 35 1 5.2786 -7.0680 -0.6289 36 1 4.2872 -8.7469 -2.1328 37 1 0.4685 -6.9000 -1.6747 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188147272.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:06 Heat of formation + Delta-G solvation = -31.458433 kcal Electronic energy + Delta-G solvation = -25203.501974 eV Core-core repulsion = 21292.100382 eV Total energy + Delta-G solvation = -3911.401592 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 377.017 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -48.64703 -40.05619 -38.55444 -37.15646 -34.43061 -32.52744 -32.20068 -31.13843 -30.64406 -29.97497 -29.15906 -26.83501 -25.20006 -22.89783 -22.43584 -22.01376 -20.90453 -19.43208 -17.79096 -17.14626 -16.62390 -16.12601 -15.88188 -15.46304 -15.37409 -15.23927 -15.02869 -14.46085 -14.09222 -13.92304 -13.51249 -13.47151 -13.19317 -13.02615 -12.66815 -12.25067 -12.12152 -11.82926 -11.63586 -11.27405 -11.13316 -11.09300 -11.04464 -10.97994 -10.70874 -10.54086 -10.38329 -10.28178 -9.01238 -8.91304 -8.78949 -8.66143 -8.38526 -7.77562 -7.70044 -6.25665 -4.72128 1.02697 1.17603 1.45707 1.49654 1.53983 3.10044 3.17248 3.20008 3.53079 3.83918 4.03439 4.36040 4.51083 4.61906 4.76145 4.81399 4.97613 4.99857 5.09502 5.19586 5.28062 5.35769 5.49440 5.53538 5.64739 5.73946 5.81973 5.97348 6.06645 6.11649 6.23765 6.30757 6.34746 6.46697 6.55167 6.71546 6.82733 7.15420 7.36511 7.74471 7.91668 8.21799 8.95434 9.37549 10.51078 10.68979 Molecular weight = 377.02amu Principal moments of inertia in cm(-1) A = 0.008075 B = 0.003315 C = 0.002677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3466.481861 B = 8443.561419 C =10456.259019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.765 5.765 2 C 0.089 3.911 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.068 0.932 9 C 0.556 3.444 10 O -0.572 6.572 11 N -0.755 5.755 12 C 0.230 3.770 13 H 0.099 0.901 14 C -0.043 4.043 15 C -0.106 4.106 16 C -0.095 4.095 17 C -0.162 4.162 18 C 0.093 3.907 19 F -0.145 7.145 20 C -0.138 4.138 21 C -0.065 4.065 22 C -0.092 4.092 23 C -0.111 4.111 24 C -0.097 4.097 25 C -0.087 4.087 26 Br -0.058 7.058 27 C -0.080 4.080 28 H 0.269 0.731 29 H 0.381 0.619 30 H 0.126 0.874 31 H 0.128 0.872 32 H 0.129 0.871 33 H 0.132 0.868 34 H 0.131 0.869 35 H 0.132 0.868 36 H 0.130 0.870 37 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.693 -17.357 -0.472 18.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.132 4.132 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.189 1.189 7 C -0.580 4.580 8 H 0.086 0.914 9 C 0.360 3.640 10 O -0.454 6.454 11 N -0.411 5.411 12 C 0.123 3.877 13 H 0.116 0.884 14 C -0.045 4.045 15 C -0.124 4.124 16 C -0.114 4.114 17 C -0.181 4.181 18 C 0.074 3.926 19 F -0.124 7.124 20 C -0.157 4.157 21 C -0.067 4.067 22 C -0.111 4.111 23 C -0.130 4.130 24 C -0.117 4.117 25 C -0.166 4.166 26 Br 0.027 6.973 27 C -0.100 4.100 28 H 0.080 0.920 29 H 0.214 0.786 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.150 0.850 34 H 0.149 0.851 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.262 -17.718 -0.913 18.814 hybrid contribution 0.791 1.067 0.346 1.372 sum 7.053 -16.651 -0.568 18.092 Atomic orbital electron populations 1.70010 1.07036 1.27390 1.34865 1.25685 0.94610 1.00262 0.92606 0.86384 0.80150 0.81443 0.78873 1.19715 1.20446 1.18897 1.20823 0.93542 0.89149 1.54479 0.91406 1.18257 0.87300 0.82138 0.76264 1.90623 1.13947 1.86384 1.54464 1.46371 1.08424 1.03669 1.82623 1.18261 0.95500 0.83337 0.90652 0.88351 1.20162 0.92777 0.94950 0.96593 1.20975 1.00107 0.99159 0.92165 1.20921 0.95785 0.97826 0.96820 1.21021 0.94583 1.03912 0.98575 1.17622 0.81388 0.99504 0.94114 1.91463 1.42519 1.83819 1.94604 1.20956 0.97805 1.01647 0.95301 1.20029 0.94436 0.95908 0.96309 1.21157 0.93183 0.97918 0.98805 1.21117 1.00108 0.94600 0.97206 1.21059 0.92948 0.99459 0.98246 1.21691 0.95760 0.97631 1.01559 1.96693 1.83912 1.53947 1.62722 1.20991 1.00134 0.93057 0.95800 0.92019 0.78577 0.85593 0.85378 0.85335 0.85010 0.85135 0.85057 0.85252 0.84847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -22.30 11.83 55.55 0.66 -21.64 16 2 C 0.09 2.39 5.50 -17.37 -0.10 2.29 16 3 Si 0.91 19.52 29.56 -169.99 -5.02 14.50 16 4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 6 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 7 C -0.54 -14.54 9.54 -35.63 -0.34 -14.88 16 8 H 0.07 1.65 7.85 -52.49 -0.41 1.24 16 9 C 0.56 14.76 7.70 -12.99 -0.10 14.66 16 10 O -0.57 -17.55 14.68 5.20 0.08 -17.48 16 11 N -0.76 -15.21 4.25 -57.48 -0.24 -15.46 16 12 C 0.23 4.05 2.38 -70.23 -0.17 3.89 16 13 H 0.10 1.97 7.30 -51.93 -0.38 1.59 16 14 C -0.04 -0.74 4.90 -104.63 -0.51 -1.25 16 15 C -0.11 -1.64 9.14 -39.58 -0.36 -2.01 16 16 C -0.10 -1.32 10.04 -39.59 -0.40 -1.72 16 17 C -0.16 -2.32 10.03 -39.51 -0.40 -2.72 16 18 C 0.09 1.51 7.30 -39.42 -0.29 1.22 16 19 F -0.15 -2.36 17.27 2.25 0.04 -2.32 16 20 C -0.14 -2.35 9.65 -39.51 -0.38 -2.73 16 21 C -0.07 -0.93 4.94 -104.62 -0.52 -1.45 16 22 C -0.09 -1.12 8.87 -39.58 -0.35 -1.47 16 23 C -0.11 -1.15 10.05 -39.59 -0.40 -1.55 16 24 C -0.10 -1.04 9.79 -39.56 -0.39 -1.43 16 25 C -0.09 -1.06 6.22 -39.52 -0.25 -1.31 16 26 Br -0.06 -0.64 33.70 -68.01 -2.29 -2.94 16 27 C -0.08 -1.08 9.41 -39.55 -0.37 -1.45 16 28 H 0.27 7.16 8.29 -40.82 -0.34 6.82 16 29 H 0.38 6.62 6.83 -40.82 -0.28 6.35 16 30 H 0.13 1.79 7.30 -52.49 -0.38 1.41 16 31 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 32 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 33 H 0.13 2.12 8.04 -52.49 -0.42 1.70 16 34 H 0.13 1.43 6.49 -52.48 -0.34 1.09 16 35 H 0.13 0.99 8.06 -52.48 -0.42 0.57 16 36 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 37 H 0.13 1.74 8.04 -52.49 -0.42 1.32 16 LS Contribution 350.43 15.07 5.28 5.28 Total: -1.00 -32.80 350.43 -10.28 -43.08 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -3.46 Total: 8.88 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -5.31 Total: -11.90 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.41 Total: -37.10 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: 0.08 Total: -17.48 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.04 Total: -2.32 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 35 Polarization: -0.64 SS G_CDS: -2.29 Total: -2.94 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.80 -10.28 -43.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188147272.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.617 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds