Wall clock time and date at job start Tue Mar 31 2020 05:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35898 * 117.00230 * 2 1 4 4 C 1.38753 * 120.05482 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.94050 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.06128 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94574 * 179.97438 * 6 5 4 8 8 C 1.38248 * 120.10797 * 359.75244 * 6 5 4 9 9 C 1.38163 * 120.05551 * 0.50058 * 8 6 5 10 10 S 1.76199 * 120.02977 * 179.77052 * 9 8 6 11 11 O 1.42097 * 106.40082 * 1.64715 * 10 9 8 12 12 O 1.42093 * 106.40502 * 228.72842 * 10 9 8 13 13 N 1.65600 * 107.21551 * 115.18620 * 10 9 8 14 14 C 1.46503 * 120.00035 * 295.31745 * 13 10 9 15 15 H 1.08992 * 109.46973 * 336.33825 * 14 13 10 16 16 C 1.53003 * 109.47031 * 216.33982 * 14 13 10 17 17 C 1.50702 * 109.47100 * 65.00258 * 16 14 13 18 18 H 1.07997 * 119.99986 * 359.97438 * 17 16 14 19 19 C 1.37882 * 119.99781 * 180.02562 * 17 16 14 20 20 N 1.31507 * 120.00072 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99609 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47218 * 89.99557 * 21 19 17 23 23 H 1.48499 * 109.46843 * 209.99773 * 21 19 17 24 24 H 1.48504 * 109.47132 * 329.99480 * 21 19 17 25 25 C 1.50698 * 109.46866 * 96.34433 * 14 13 10 26 26 C 1.38226 * 120.00246 * 39.72185 * 25 14 13 27 27 C 1.38242 * 119.99973 * 179.81120 * 26 25 14 28 28 C 1.38235 * 119.99761 * 0.40198 * 27 26 25 29 29 C 1.38230 * 120.00004 * 359.85281 * 28 27 26 30 30 C 1.38233 * 120.00180 * 359.95907 * 29 28 27 31 31 H 1.08997 * 109.46757 * 59.99932 * 1 2 3 32 32 H 1.09002 * 109.47182 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46894 * 300.00132 * 1 2 3 34 34 H 1.08002 * 120.02657 * 359.97438 * 4 3 2 35 35 H 1.08000 * 119.96813 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.46649 * 90.00661 * 7 6 5 37 37 H 1.09004 * 109.47105 * 210.00287 * 7 6 5 38 38 H 1.08997 * 109.47420 * 330.00802 * 7 6 5 39 39 H 1.07992 * 119.97214 * 180.25300 * 8 6 5 40 40 H 0.97002 * 120.00075 * 115.31997 * 13 10 9 41 41 H 1.08996 * 109.47312 * 184.99996 * 16 14 13 42 42 H 1.08996 * 109.47250 * 305.00235 * 16 14 13 43 43 H 0.97001 * 119.99953 * 180.02562 * 20 19 17 44 44 H 1.08000 * 120.00423 * 0.02562 * 26 25 14 45 45 H 1.07998 * 120.00007 * 180.23489 * 27 26 25 46 46 H 1.07997 * 119.99994 * 179.83738 * 28 27 26 47 47 H 1.08003 * 120.00067 * 179.97438 * 29 28 27 48 48 H 1.08001 * 119.99940 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9211 3.6046 0.0011 6 6 3.3021 3.6757 0.0016 7 6 3.9863 5.0184 0.0016 8 6 4.0561 2.5169 0.0068 9 6 3.4313 1.2847 0.0010 10 16 4.3930 -0.1917 0.0015 11 8 5.7535 0.2157 0.0476 12 8 3.8631 -1.0161 -1.0274 13 7 4.0902 -0.9734 1.4296 14 6 4.4830 -0.3573 2.6995 15 1 5.2924 0.3514 2.5244 16 6 4.9564 -1.4430 3.6681 17 6 6.2103 -2.0834 3.1310 18 1 6.6277 -1.7498 2.1924 19 6 6.8242 -3.0960 3.8373 20 7 6.3157 -3.5026 4.9800 21 14 8.3789 -3.8893 3.1719 22 1 9.5656 -3.1538 3.6779 23 1 8.4443 -5.3033 3.6209 24 1 8.3628 -3.8416 1.6877 25 6 3.3018 0.3657 3.2936 26 6 2.0402 -0.1943 3.2198 27 6 0.9572 0.4671 3.7683 28 6 1.1348 1.6924 4.3832 29 6 2.3956 2.2548 4.4524 30 6 3.4791 1.5916 3.9073 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 0.2129 2.3203 0.0005 35 1 1.3342 4.5113 0.0019 36 1 4.1509 5.3422 1.0293 37 1 4.9444 4.9380 -0.5119 38 1 3.3585 5.7461 -0.5125 39 1 5.1345 2.5750 0.0113 40 1 3.6528 -1.8392 1.4254 41 1 5.1642 -0.9967 4.6406 42 1 4.1788 -2.1994 3.7742 43 1 6.7478 -4.2147 5.4771 44 1 1.9010 -1.1501 2.7367 45 1 -0.0279 0.0279 3.7140 46 1 0.2884 2.2103 4.8094 47 1 2.5342 3.2122 4.9324 48 1 4.4641 2.0312 3.9610 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195430039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:16 Heat of formation + Delta-G solvation = -65.264719 kcal Electronic energy + Delta-G solvation = -34082.636049 eV Core-core repulsion = 29808.677872 eV Total energy + Delta-G solvation = -4273.958178 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.134 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -40.34302 -39.08013 -37.90404 -36.63808 -35.65635 -35.33326 -32.58957 -32.27619 -31.39646 -30.73935 -30.34337 -28.55033 -28.06221 -26.10556 -24.74989 -23.37655 -22.33531 -21.96665 -21.64838 -20.18707 -19.05657 -18.39843 -17.26273 -16.94815 -16.47236 -16.45832 -16.10179 -15.86367 -15.32999 -14.83019 -14.61620 -14.53316 -14.44885 -14.39344 -14.03446 -13.85111 -13.63547 -13.14453 -12.99410 -12.63954 -12.51515 -12.44247 -12.33907 -12.20477 -12.03526 -11.90229 -11.60472 -11.55790 -11.49183 -11.21931 -11.07584 -11.05171 -10.84138 -10.69299 -10.63397 -10.42919 -10.38362 -9.84001 -9.44833 -9.18559 -8.79351 -8.59177 -8.35898 -8.30137 -8.21956 -5.98508 -4.00034 0.73701 1.00416 1.27048 1.69327 1.73566 3.03449 3.31641 3.37688 3.43709 3.50697 3.61088 4.13874 4.21465 4.51284 4.51962 4.58473 4.80902 4.92882 4.98933 5.04658 5.14577 5.16656 5.18500 5.26431 5.29071 5.35198 5.38537 5.46186 5.47818 5.49970 5.71795 5.77407 5.81047 5.83164 5.89753 5.96208 6.03030 6.20720 6.28097 6.34265 6.45878 6.58277 6.67235 6.77053 6.78602 7.07115 7.09645 7.32986 7.50839 7.64497 7.77422 8.00527 8.38281 9.06937 9.64612 11.12253 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.009767 B = 0.004152 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.111127 B = 6741.651176 C = 7546.718930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.303 6.303 3 C 0.230 3.770 4 C -0.224 4.224 5 C -0.030 4.030 6 C -0.146 4.146 7 C -0.108 4.108 8 C 0.015 3.985 9 C -0.698 4.698 10 S 2.697 3.303 11 O -0.959 6.959 12 O -0.962 6.962 13 N -1.082 6.082 14 C 0.191 3.809 15 H 0.089 0.911 16 C 0.031 3.969 17 C -0.516 4.516 18 H 0.063 0.937 19 C 0.059 3.941 20 N -0.896 5.896 21 Si 0.888 3.112 22 H -0.280 1.280 23 H -0.288 1.288 24 H -0.271 1.271 25 C -0.081 4.081 26 C -0.095 4.095 27 C -0.127 4.127 28 C -0.132 4.132 29 C -0.122 4.122 30 C -0.112 4.112 31 H 0.056 0.944 32 H 0.106 0.894 33 H 0.060 0.940 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.070 0.930 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.147 0.853 40 H 0.419 0.581 41 H 0.032 0.968 42 H 0.027 0.973 43 H 0.260 0.740 44 H 0.121 0.879 45 H 0.112 0.888 46 H 0.111 0.889 47 H 0.114 0.886 48 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.697 15.623 -7.007 22.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.214 6.214 3 C 0.182 3.818 4 C -0.243 4.243 5 C -0.048 4.048 6 C -0.147 4.147 7 C -0.165 4.165 8 C -0.005 4.005 9 C -0.783 4.783 10 S 2.785 3.215 11 O -0.949 6.949 12 O -0.952 6.952 13 N -0.842 5.842 14 C 0.084 3.916 15 H 0.107 0.893 16 C -0.007 4.007 17 C -0.554 4.554 18 H 0.082 0.918 19 C -0.142 4.142 20 N -0.535 5.535 21 Si 0.716 3.284 22 H -0.206 1.206 23 H -0.214 1.214 24 H -0.196 1.196 25 C -0.083 4.083 26 C -0.114 4.114 27 C -0.145 4.145 28 C -0.150 4.150 29 C -0.140 4.140 30 C -0.130 4.130 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.078 0.922 34 H 0.150 0.850 35 H 0.144 0.856 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.164 0.836 40 H 0.254 0.746 41 H 0.050 0.950 42 H 0.045 0.955 43 H 0.070 0.930 44 H 0.139 0.861 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.132 0.868 48 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -13.952 15.193 -7.548 21.965 hybrid contribution -0.281 -0.180 0.205 0.391 sum -14.233 15.013 -7.343 21.952 Atomic orbital electron populations 1.23152 0.77563 1.04621 1.01419 1.86154 1.22196 1.26107 1.86960 1.18224 0.90356 0.84781 0.88453 1.21208 1.00033 0.92324 1.10754 1.21007 0.94033 0.97013 0.92772 1.19857 0.93686 0.95640 1.05538 1.20720 1.00415 0.92933 1.02458 1.20719 1.00419 0.89640 0.89674 1.30377 1.04293 1.20313 1.23343 1.01750 0.73747 0.73148 0.72879 1.93573 1.31511 1.83335 1.86487 1.93556 1.80561 1.66199 1.54934 1.55144 1.76857 1.31537 1.20674 1.20081 0.91185 0.96298 0.84061 0.89263 1.19338 0.96615 0.91649 0.93104 1.21230 1.09112 1.18145 1.06956 0.91848 1.24965 0.97476 0.96873 0.94894 1.69959 1.40110 1.29150 1.14301 0.86644 0.83733 0.78421 0.79617 1.20606 1.21362 1.19611 1.20685 0.95923 0.94236 0.97496 1.20938 0.92054 0.99624 0.98758 1.21022 0.98429 0.95602 0.99480 1.20964 0.96926 0.96294 1.00831 1.20983 0.92946 0.99728 1.00340 1.21029 0.98818 0.94758 0.98437 0.92494 0.87610 0.92166 0.85040 0.85558 0.91164 0.91325 0.91781 0.83559 0.74556 0.95018 0.95515 0.93050 0.86119 0.86988 0.87104 0.86812 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.30 -4.08 9.31 -28.51 -0.27 -4.34 16 3 C 0.23 3.20 6.64 -39.21 -0.26 2.94 16 4 C -0.22 -2.53 9.04 -39.43 -0.36 -2.88 16 5 C -0.03 -0.31 9.69 -39.61 -0.38 -0.70 16 6 C -0.15 -1.66 5.88 -104.60 -0.62 -2.28 16 7 C -0.11 -0.92 10.01 36.00 0.36 -0.56 16 8 C 0.01 0.20 9.20 -39.61 -0.36 -0.16 16 9 C -0.70 -10.86 5.89 -39.43 -0.23 -11.09 16 10 S 2.70 50.22 5.29 -107.50 -0.57 49.65 16 11 O -0.96 -20.18 16.32 -57.18 -0.93 -21.11 16 12 O -0.96 -19.68 17.32 -62.32 -1.08 -20.76 16 13 N -1.08 -20.02 4.48 -5.88 -0.03 -20.04 16 14 C 0.19 3.70 2.45 -69.08 -0.17 3.53 16 15 H 0.09 1.77 7.37 -51.93 -0.38 1.39 16 16 C 0.03 0.75 4.56 -27.88 -0.13 0.63 16 17 C -0.52 -14.09 8.84 -34.44 -0.30 -14.39 16 18 H 0.06 1.75 7.74 -52.49 -0.41 1.35 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.90 -26.20 13.29 55.43 0.74 -25.46 16 21 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 25 C -0.08 -1.36 4.96 -104.63 -0.52 -1.88 16 26 C -0.10 -1.45 9.33 -39.58 -0.37 -1.82 16 27 C -0.13 -1.66 10.05 -39.58 -0.40 -2.05 16 28 C -0.13 -1.64 10.05 -39.59 -0.40 -2.04 16 29 C -0.12 -1.61 10.05 -39.59 -0.40 -2.01 16 30 C -0.11 -1.71 9.67 -39.58 -0.38 -2.09 16 31 H 0.06 0.41 7.66 -51.93 -0.40 0.02 16 32 H 0.11 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.45 7.66 -51.93 -0.40 0.06 16 34 H 0.13 1.13 6.30 -52.49 -0.33 0.80 16 35 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 38 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 39 H 0.15 1.96 7.33 -52.49 -0.38 1.57 16 40 H 0.42 7.38 8.60 -34.47 -0.30 7.08 16 41 H 0.03 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 44 H 0.12 1.80 7.52 -52.49 -0.39 1.40 16 45 H 0.11 1.19 8.06 -52.49 -0.42 0.76 16 46 H 0.11 1.11 8.06 -52.49 -0.42 0.69 16 47 H 0.11 1.24 8.06 -52.48 -0.42 0.82 16 48 H 0.12 1.73 8.04 -52.49 -0.42 1.31 16 LS Contribution 415.92 15.07 6.27 6.27 Total: -1.00 -34.68 415.92 -11.68 -46.36 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -6.77 Total: 6.57 kcal Atomic # 6 Polarization: -30.03 SS G_CDS: -4.02 Total: -34.05 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.71 Total: -45.50 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -2.28 Total: -46.22 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 50.22 SS G_CDS: -0.57 Total: 49.65 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.68 -11.68 -46.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195430039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.902 kcal (2) G-P(sol) polarization free energy of solvation -34.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds