Wall clock time and date at job start Tue Mar 31 2020 05:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35898 * 117.00230 * 2 1 4 4 C 1.38753 * 120.05482 * 0.02562 * 3 2 1 5 5 C 1.38120 * 119.94050 * 179.97438 * 4 3 2 6 6 C 1.38288 * 120.06128 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.94574 * 179.97438 * 6 5 4 8 8 C 1.38248 * 120.10797 * 359.75244 * 6 5 4 9 9 C 1.38163 * 120.05551 * 0.50058 * 8 6 5 10 10 S 1.76199 * 120.02977 * 179.77052 * 9 8 6 11 11 O 1.42097 * 106.40082 * 1.64715 * 10 9 8 12 12 O 1.42093 * 106.40502 * 228.72842 * 10 9 8 13 13 N 1.65600 * 107.21551 * 115.18620 * 10 9 8 14 14 C 1.46503 * 120.00035 * 295.31745 * 13 10 9 15 15 H 1.08992 * 109.46973 * 336.33825 * 14 13 10 16 16 C 1.53003 * 109.47031 * 216.33982 * 14 13 10 17 17 C 1.50702 * 109.47100 * 65.00258 * 16 14 13 18 18 H 1.07997 * 119.99986 * 359.97438 * 17 16 14 19 19 C 1.37882 * 119.99781 * 180.02562 * 17 16 14 20 20 N 1.31507 * 120.00072 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99609 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47218 * 89.99557 * 21 19 17 23 23 H 1.48499 * 109.46843 * 209.99773 * 21 19 17 24 24 H 1.48504 * 109.47132 * 329.99480 * 21 19 17 25 25 C 1.50698 * 109.46866 * 96.34433 * 14 13 10 26 26 C 1.38226 * 120.00246 * 39.72185 * 25 14 13 27 27 C 1.38242 * 119.99973 * 179.81120 * 26 25 14 28 28 C 1.38235 * 119.99761 * 0.40198 * 27 26 25 29 29 C 1.38230 * 120.00004 * 359.85281 * 28 27 26 30 30 C 1.38233 * 120.00180 * 359.95907 * 29 28 27 31 31 H 1.08997 * 109.46757 * 59.99932 * 1 2 3 32 32 H 1.09002 * 109.47182 * 179.97438 * 1 2 3 33 33 H 1.08994 * 109.46894 * 300.00132 * 1 2 3 34 34 H 1.08002 * 120.02657 * 359.97438 * 4 3 2 35 35 H 1.08000 * 119.96813 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.46649 * 90.00661 * 7 6 5 37 37 H 1.09004 * 109.47105 * 210.00287 * 7 6 5 38 38 H 1.08997 * 109.47420 * 330.00802 * 7 6 5 39 39 H 1.07992 * 119.97214 * 180.25300 * 8 6 5 40 40 H 0.97002 * 120.00075 * 115.31997 * 13 10 9 41 41 H 1.08996 * 109.47312 * 184.99996 * 16 14 13 42 42 H 1.08996 * 109.47250 * 305.00235 * 16 14 13 43 43 H 0.97001 * 119.99953 * 180.02562 * 20 19 17 44 44 H 1.08000 * 120.00423 * 0.02562 * 26 25 14 45 45 H 1.07998 * 120.00007 * 180.23489 * 27 26 25 46 46 H 1.07997 * 119.99994 * 179.83738 * 28 27 26 47 47 H 1.08003 * 120.00067 * 179.97438 * 29 28 27 48 48 H 1.08001 * 119.99940 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 1.2915 2.3753 0.0005 5 6 1.9211 3.6046 0.0011 6 6 3.3021 3.6757 0.0016 7 6 3.9863 5.0184 0.0016 8 6 4.0561 2.5169 0.0068 9 6 3.4313 1.2847 0.0010 10 16 4.3930 -0.1917 0.0015 11 8 5.7535 0.2157 0.0476 12 8 3.8631 -1.0161 -1.0274 13 7 4.0902 -0.9734 1.4296 14 6 4.4830 -0.3573 2.6995 15 1 5.2924 0.3514 2.5244 16 6 4.9564 -1.4430 3.6681 17 6 6.2103 -2.0834 3.1310 18 1 6.6277 -1.7498 2.1924 19 6 6.8242 -3.0960 3.8373 20 7 6.3157 -3.5026 4.9800 21 14 8.3789 -3.8893 3.1719 22 1 9.5656 -3.1538 3.6779 23 1 8.4443 -5.3033 3.6209 24 1 8.3628 -3.8416 1.6877 25 6 3.3018 0.3657 3.2936 26 6 2.0402 -0.1943 3.2198 27 6 0.9572 0.4671 3.7683 28 6 1.1348 1.6924 4.3832 29 6 2.3956 2.2548 4.4524 30 6 3.4791 1.5916 3.9073 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8899 34 1 0.2129 2.3203 0.0005 35 1 1.3342 4.5113 0.0019 36 1 4.1509 5.3422 1.0293 37 1 4.9444 4.9380 -0.5119 38 1 3.3585 5.7461 -0.5125 39 1 5.1345 2.5750 0.0113 40 1 3.6528 -1.8392 1.4254 41 1 5.1642 -0.9967 4.6406 42 1 4.1788 -2.1994 3.7742 43 1 6.7478 -4.2147 5.4771 44 1 1.9010 -1.1501 2.7367 45 1 -0.0279 0.0279 3.7140 46 1 0.2884 2.2103 4.8094 47 1 2.5342 3.2122 4.9324 48 1 4.4641 2.0312 3.9610 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195430039.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:14 Heat of formation + Delta-G solvation = -87.145333 kcal Electronic energy + Delta-G solvation = -34083.584864 eV Core-core repulsion = 29808.677872 eV Total energy + Delta-G solvation = -4274.906992 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.134 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.25499 -40.26283 -38.83957 -38.13682 -37.16312 -36.90636 -34.67519 -33.14596 -32.30445 -31.93576 -31.50078 -30.36922 -28.79624 -26.85767 -26.53025 -24.38497 -23.76577 -23.27361 -22.55006 -21.58896 -20.40336 -19.44906 -18.79576 -18.38557 -17.83825 -17.68123 -17.43017 -16.80428 -16.70156 -16.41054 -16.00649 -15.80369 -15.44903 -15.34996 -15.08972 -14.84031 -14.56919 -14.51334 -14.30416 -14.13790 -13.91841 -13.52935 -13.40229 -13.23435 -13.16058 -13.10965 -13.04783 -12.96941 -12.87010 -12.66621 -12.50606 -12.42954 -12.41789 -12.11639 -11.86493 -11.80493 -11.66276 -11.53179 -11.26627 -10.56481 -10.42134 -10.27156 -9.66642 -9.45782 -9.17550 -8.18093 -6.25553 -0.54194 -0.12691 0.35793 0.58448 0.65723 1.37880 1.38571 1.50557 2.03717 2.25045 2.41671 2.49228 2.81195 3.04291 3.15740 3.40565 3.80257 3.88075 3.98545 4.06524 4.06888 4.23394 4.28647 4.31687 4.37697 4.40526 4.41983 4.42726 4.59858 4.63599 4.74558 4.76938 4.86712 4.88608 4.89587 4.94206 5.00651 5.16158 5.21318 5.23721 5.29431 5.45457 5.49778 5.60897 5.69508 5.72843 5.74550 5.81564 5.97520 6.18379 6.24453 6.25213 6.28360 6.88033 7.42074 8.92541 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.009767 B = 0.004152 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2866.111127 B = 6741.651176 C = 7546.718930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 O -0.328 6.328 3 C 0.220 3.780 4 C -0.220 4.220 5 C -0.019 4.019 6 C -0.144 4.144 7 C -0.109 4.109 8 C -0.009 4.009 9 C -0.710 4.710 10 S 2.700 3.300 11 O -0.998 6.998 12 O -0.990 6.990 13 N -1.085 6.085 14 C 0.206 3.794 15 H 0.074 0.926 16 C 0.042 3.958 17 C -0.529 4.529 18 H 0.051 0.949 19 C 0.011 3.989 20 N -0.925 5.925 21 Si 0.944 3.056 22 H -0.272 1.272 23 H -0.278 1.278 24 H -0.274 1.274 25 C -0.101 4.101 26 C -0.106 4.106 27 C -0.124 4.124 28 C -0.122 4.122 29 C -0.120 4.120 30 C -0.129 4.129 31 H 0.074 0.926 32 H 0.116 0.884 33 H 0.077 0.923 34 H 0.165 0.835 35 H 0.168 0.832 36 H 0.078 0.922 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.136 0.864 40 H 0.419 0.581 41 H 0.008 0.992 42 H 0.010 0.990 43 H 0.263 0.737 44 H 0.113 0.887 45 H 0.142 0.858 46 H 0.147 0.853 47 H 0.141 0.859 48 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.889 18.520 -6.849 26.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.241 6.241 3 C 0.171 3.829 4 C -0.239 4.239 5 C -0.037 4.037 6 C -0.145 4.145 7 C -0.165 4.165 8 C -0.029 4.029 9 C -0.801 4.801 10 S 2.794 3.206 11 O -0.989 6.989 12 O -0.980 6.980 13 N -0.843 5.843 14 C 0.099 3.901 15 H 0.092 0.908 16 C 0.003 3.997 17 C -0.567 4.567 18 H 0.070 0.930 19 C -0.187 4.187 20 N -0.565 5.565 21 Si 0.769 3.231 22 H -0.197 1.197 23 H -0.203 1.203 24 H -0.199 1.199 25 C -0.103 4.103 26 C -0.124 4.124 27 C -0.141 4.141 28 C -0.140 4.140 29 C -0.138 4.138 30 C -0.147 4.147 31 H 0.093 0.907 32 H 0.135 0.865 33 H 0.096 0.904 34 H 0.183 0.817 35 H 0.186 0.814 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.154 0.846 40 H 0.254 0.746 41 H 0.026 0.974 42 H 0.029 0.971 43 H 0.072 0.928 44 H 0.131 0.869 45 H 0.159 0.841 46 H 0.165 0.835 47 H 0.159 0.841 48 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -17.114 18.039 -7.388 25.940 hybrid contribution 0.578 -0.981 0.156 1.149 sum -16.536 17.058 -7.232 24.834 Atomic orbital electron populations 1.23506 0.75290 1.06065 1.03085 1.86135 1.24681 1.26394 1.86869 1.18394 0.89828 0.86043 0.88595 1.21607 1.01548 0.91423 1.09332 1.21526 0.93695 0.98282 0.90213 1.20199 0.94474 0.95738 1.04131 1.20802 1.00640 0.91764 1.03332 1.20808 1.00403 0.90330 0.91310 1.29686 1.04975 1.18407 1.27066 1.01103 0.73322 0.73862 0.72290 1.93510 1.34496 1.84014 1.86843 1.93504 1.80836 1.67950 1.55740 1.54999 1.76950 1.32008 1.20374 1.19644 0.92606 0.94538 0.83327 0.90818 1.19108 0.95020 0.92405 0.93143 1.21528 1.10321 1.18354 1.06491 0.93025 1.25694 1.00316 0.97494 0.95199 1.70051 1.41438 1.29769 1.15279 0.85771 0.80545 0.78026 0.78750 1.19731 1.20276 1.19876 1.20375 0.95301 0.95267 0.99364 1.20976 0.92275 0.99737 0.99447 1.21336 0.98808 0.95695 0.98306 1.21389 0.97593 0.95752 0.99251 1.21293 0.92516 1.00515 0.99459 1.21150 0.99821 0.94654 0.99095 0.90744 0.86547 0.90398 0.81747 0.81418 0.90338 0.91562 0.89247 0.84631 0.74592 0.97361 0.97142 0.92823 0.86873 0.84062 0.83513 0.84117 0.86593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 9.81 113.37 1.11 1.33 16 2 O -0.33 -8.62 9.31 -83.70 -0.78 -9.40 16 3 C 0.22 5.88 6.64 22.51 0.15 6.03 16 4 C -0.22 -4.15 9.04 22.37 0.20 -3.95 16 5 C -0.02 -0.32 9.69 22.25 0.22 -0.10 16 6 C -0.14 -2.96 5.88 -19.85 -0.12 -3.07 16 7 C -0.11 -1.53 10.01 71.23 0.71 -0.82 16 8 C -0.01 -0.25 9.20 22.25 0.20 -0.05 16 9 C -0.71 -22.64 5.89 22.37 0.13 -22.51 16 10 S 2.70 108.00 5.29 -56.49 -0.30 107.70 16 11 O -1.00 -45.71 16.32 -128.00 -2.09 -47.80 16 12 O -0.99 -43.14 17.32 -123.08 -2.13 -45.27 16 13 N -1.08 -43.26 4.48 -172.52 -0.77 -44.03 16 14 C 0.21 8.59 2.45 44.25 0.11 8.70 16 15 H 0.07 3.22 7.37 -2.39 -0.02 3.20 16 16 C 0.04 2.15 4.56 29.85 0.14 2.29 16 17 C -0.53 -30.47 8.84 25.60 0.23 -30.24 16 18 H 0.05 3.04 7.74 -2.91 -0.02 3.01 16 19 C 0.01 0.66 5.46 84.66 0.46 1.12 16 20 N -0.92 -55.79 13.29 21.45 0.28 -55.50 16 21 Si 0.94 46.26 29.54 68.60 2.03 48.29 16 22 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.27 -13.43 7.11 99.48 0.71 -12.72 16 25 C -0.10 -3.47 4.96 -19.87 -0.10 -3.57 16 26 C -0.11 -3.18 9.33 22.27 0.21 -2.97 16 27 C -0.12 -2.84 10.05 22.27 0.22 -2.61 16 28 C -0.12 -2.51 10.05 22.27 0.22 -2.29 16 29 C -0.12 -2.82 10.05 22.27 0.22 -2.59 16 30 C -0.13 -3.90 9.67 22.27 0.22 -3.69 16 31 H 0.07 0.84 7.66 -2.39 -0.02 0.83 16 32 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 0.88 7.66 -2.39 -0.02 0.86 16 34 H 0.17 1.95 6.30 -2.91 -0.02 1.93 16 35 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 36 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 0.97 8.09 -2.38 -0.02 0.95 16 38 H 0.09 0.82 8.08 -2.39 -0.02 0.80 16 39 H 0.14 3.93 7.33 -2.91 -0.02 3.91 16 40 H 0.42 16.16 8.60 -96.74 -0.83 15.33 16 41 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 43 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 44 H 0.11 3.47 7.52 -2.91 -0.02 3.45 16 45 H 0.14 2.38 8.06 -2.91 -0.02 2.36 16 46 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 47 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 48 H 0.12 3.47 8.04 -2.91 -0.02 3.45 16 Total: -1.00 -79.71 415.92 0.93 -78.79 By element: Atomic # 1 Polarization: 26.10 SS G_CDS: 0.15 Total: 26.25 kcal Atomic # 6 Polarization: -63.56 SS G_CDS: 4.54 Total: -59.02 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -0.49 Total: -99.53 kcal Atomic # 8 Polarization: -97.46 SS G_CDS: -5.00 Total: -102.46 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Atomic # 16 Polarization: 108.00 SS G_CDS: -0.30 Total: 107.70 kcal Total: -79.71 0.93 -78.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195430039.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.358 kcal (2) G-P(sol) polarization free energy of solvation -79.714 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds