Wall clock time and date at job start Tue Mar 31 2020 06:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00116 * 2 1 4 4 H 1.48504 * 109.47018 * 269.99693 * 3 2 1 5 5 H 1.48504 * 109.47331 * 29.99853 * 3 2 1 6 6 H 1.48503 * 109.47326 * 149.99618 * 3 2 1 7 7 C 1.37880 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99928 * 0.02562 * 7 2 1 9 9 C 1.50701 * 119.99972 * 180.02562 * 7 2 1 10 10 C 1.53003 * 109.46724 * 180.02562 * 9 7 2 11 11 S 1.81401 * 109.46735 * 180.02562 * 10 9 7 12 12 O 1.42099 * 110.54330 * 68.37692 * 11 10 9 13 13 O 1.42099 * 110.54192 * 291.62219 * 11 10 9 14 14 N 1.65602 * 104.44774 * 179.97438 * 11 10 9 15 15 C 1.34775 * 119.99710 * 65.00346 * 14 11 10 16 16 O 1.21650 * 120.00423 * 5.04648 * 15 14 11 17 17 C 1.47057 * 119.99673 * 184.77516 * 15 14 11 18 18 C 1.35867 * 125.43088 * 354.81455 * 17 15 14 19 19 C 1.41589 * 107.72654 * 180.02562 * 18 17 15 20 20 C 1.40108 * 133.38092 * 179.97438 * 19 18 17 21 21 C 1.36436 * 119.82868 * 179.97438 * 20 19 18 22 22 C 1.38942 * 120.61990 * 0.02666 * 21 20 19 23 23 C 1.37664 * 120.64529 * 359.97438 * 22 21 20 24 24 C 1.39228 * 119.81541 * 359.97438 * 23 22 21 25 25 N 1.37478 * 133.18436 * 180.33899 * 24 23 22 26 26 C 1.46502 * 125.60621 * 359.95913 * 25 24 23 27 27 C 1.53000 * 109.47386 * 274.82912 * 26 25 24 28 28 C 1.53000 * 117.49928 * 243.62073 * 27 26 25 29 29 C 1.52995 * 59.99906 * 252.51017 * 28 27 26 30 30 H 0.96998 * 120.00169 * 359.97438 * 1 2 3 31 31 H 1.08994 * 109.47129 * 60.00796 * 9 7 2 32 32 H 1.09000 * 109.47354 * 300.00280 * 9 7 2 33 33 H 1.08994 * 109.47293 * 60.00130 * 10 9 7 34 34 H 1.09000 * 109.46808 * 299.99848 * 10 9 7 35 35 H 0.96994 * 119.99920 * 244.99866 * 14 11 10 36 36 H 1.08003 * 126.14203 * 359.97223 * 18 17 15 37 37 H 1.07997 * 120.08384 * 0.02562 * 20 19 18 38 38 H 1.08008 * 119.68654 * 180.02562 * 21 20 19 39 39 H 1.07999 * 119.67594 * 179.97438 * 22 21 20 40 40 H 1.08006 * 120.09185 * 179.97438 * 23 22 21 41 41 H 1.09002 * 109.46920 * 34.83143 * 26 25 24 42 42 H 1.09001 * 109.47316 * 154.82451 * 26 25 24 43 43 H 1.09003 * 115.54783 * 29.32395 * 27 26 25 44 44 H 1.09006 * 117.49712 * 359.97438 * 28 27 26 45 45 H 1.08998 * 117.49798 * 145.01673 * 28 27 26 46 46 H 1.09001 * 117.49438 * 252.50825 * 29 28 27 47 47 H 1.08997 * 117.49873 * 107.49003 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 16 5.8355 -2.6366 0.0025 12 8 6.3331 -2.1467 1.2400 13 8 6.3351 -2.1458 -1.2340 14 7 6.2486 -4.2403 0.0029 15 6 5.9400 -5.0159 -1.0552 16 8 5.4410 -4.5203 -2.0478 17 6 6.2120 -6.4605 -1.0120 18 6 6.8579 -7.1107 -0.0091 19 6 6.9133 -8.4836 -0.3509 20 6 7.4469 -9.6127 0.2843 21 6 7.3426 -10.8374 -0.3080 22 6 6.7117 -10.9771 -1.5380 23 6 6.1795 -9.8830 -2.1820 24 6 6.2723 -8.6228 -1.5975 25 7 5.8449 -7.3738 -1.9814 26 6 5.1240 -7.0618 -3.2180 27 6 6.1272 -6.8492 -4.3534 28 6 6.1886 -5.4598 -4.9911 29 6 5.5663 -6.6273 -5.7594 30 1 -0.4850 0.8400 0.0004 31 1 3.8745 -0.6802 0.8911 32 1 3.8753 -0.6804 -0.8888 33 1 3.6585 -3.1502 -0.8892 34 1 3.6577 -3.1506 0.8907 35 1 6.7128 -4.6212 0.7646 36 1 7.2582 -6.6611 0.8876 37 1 7.9387 -9.5140 1.2407 38 1 7.7544 -11.7063 0.1839 39 1 6.6381 -11.9537 -1.9933 40 1 5.6913 -10.0019 -3.1381 41 1 4.4599 -7.8886 -3.4699 42 1 4.5369 -6.1542 -3.0772 43 1 7.0609 -7.4049 -4.2659 44 1 5.5139 -4.6972 -4.6019 45 1 7.1629 -5.1010 -5.3231 46 1 6.1311 -7.0366 -6.5970 47 1 4.4825 -6.6327 -5.8755 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195580220.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:34 Heat of formation + Delta-G solvation = -20.323216 kcal Electronic energy + Delta-G solvation = -32118.077392 eV Core-core repulsion = 27780.642113 eV Total energy + Delta-G solvation = -4337.435279 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 376.129 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.07800 -39.86159 -37.93319 -36.98647 -36.78389 -35.82173 -34.82081 -34.01297 -33.00818 -31.54569 -30.55458 -29.59162 -26.92942 -26.07288 -24.84742 -22.59316 -22.30231 -21.71573 -21.43139 -21.11206 -20.50306 -19.51311 -18.35449 -17.77729 -17.24631 -16.95814 -16.50528 -16.18545 -15.76558 -15.55745 -15.50737 -15.19545 -14.75758 -14.40312 -14.34123 -14.29192 -13.98142 -13.77280 -13.65936 -13.39258 -13.02244 -12.85629 -12.54506 -12.28746 -12.02178 -11.98491 -11.92369 -11.81119 -11.63342 -11.45707 -11.34005 -11.28733 -11.24509 -11.03702 -10.63529 -10.60219 -10.47228 -10.21728 -10.14906 -10.07841 -9.69062 -9.40256 -8.68806 -8.55135 -8.03878 -6.18964 -4.20750 0.24135 0.37768 1.31017 1.63765 2.13050 2.65106 2.81320 3.25206 3.32381 3.35649 3.55195 3.59052 3.76972 3.95769 4.26208 4.33462 4.37375 4.44136 4.54782 4.65077 4.69587 4.76858 4.79364 4.90390 4.98903 5.05950 5.12090 5.13243 5.25175 5.29065 5.39648 5.41740 5.45787 5.46573 5.48867 5.68458 5.80582 5.89580 6.08928 6.11146 6.18132 6.22276 6.29024 6.35566 6.50929 6.73437 6.74794 6.87814 6.90187 7.26221 7.50211 8.33230 8.81719 9.39971 10.93309 Molecular weight = 376.13amu Principal moments of inertia in cm(-1) A = 0.011778 B = 0.002532 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.692751 B =11056.218370 C =11858.560980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.073 3.927 3 Si 0.869 3.131 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.262 1.262 7 C -0.519 4.519 8 H 0.078 0.922 9 C -0.005 4.005 10 C -0.568 4.568 11 S 2.565 3.435 12 O -0.949 6.949 13 O -0.931 6.931 14 N -1.047 6.047 15 C 0.605 3.395 16 O -0.482 6.482 17 C 0.020 3.980 18 C -0.133 4.133 19 C -0.119 4.119 20 C -0.061 4.061 21 C -0.150 4.150 22 C -0.089 4.089 23 C -0.127 4.127 24 C 0.115 3.885 25 N -0.440 5.440 26 C 0.130 3.870 27 C -0.177 4.177 28 C -0.163 4.163 29 C -0.172 4.172 30 H 0.267 0.733 31 H 0.034 0.966 32 H 0.031 0.969 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.431 0.569 36 H 0.155 0.845 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.090 0.910 42 H 0.115 0.885 43 H 0.105 0.895 44 H 0.111 0.889 45 H 0.092 0.908 46 H 0.095 0.905 47 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.464 -22.989 -3.629 27.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.130 4.130 3 Si 0.695 3.305 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.186 1.186 7 C -0.558 4.558 8 H 0.097 0.903 9 C -0.044 4.044 10 C -0.703 4.703 11 S 2.665 3.335 12 O -0.939 6.939 13 O -0.922 6.922 14 N -0.808 5.808 15 C 0.392 3.608 16 O -0.355 6.355 17 C -0.091 4.091 18 C -0.159 4.159 19 C -0.123 4.123 20 C -0.079 4.079 21 C -0.169 4.169 22 C -0.109 4.109 23 C -0.148 4.148 24 C 0.005 3.995 25 N -0.120 5.120 26 C 0.010 3.990 27 C -0.196 4.196 28 C -0.200 4.200 29 C -0.210 4.210 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.049 0.951 33 H 0.153 0.847 34 H 0.148 0.852 35 H 0.267 0.733 36 H 0.173 0.827 37 H 0.143 0.857 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.140 0.860 41 H 0.108 0.892 42 H 0.133 0.867 43 H 0.123 0.877 44 H 0.129 0.871 45 H 0.111 0.889 46 H 0.114 0.886 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 15.391 -21.673 -4.684 26.992 hybrid contribution 0.085 0.241 0.397 0.472 sum 15.477 -21.432 -4.287 26.781 Atomic orbital electron populations 1.69874 1.06202 1.27313 1.49800 1.24972 0.94830 0.99152 0.94077 0.86927 0.80673 0.83670 0.79194 1.19604 1.20699 1.18605 1.20796 0.87537 0.95000 1.52508 0.90343 1.19436 1.00076 0.86858 0.98072 1.30186 1.18410 1.10053 1.11632 1.06778 0.80204 0.71864 0.74676 1.93611 1.79558 1.75810 1.44938 1.93615 1.78333 1.75817 1.44388 1.55185 1.66603 1.32491 1.26513 1.16998 0.76615 0.85311 0.81874 1.90982 1.40543 1.74490 1.29451 1.19619 1.07077 0.89894 0.92549 1.20988 1.03256 0.92559 0.99140 1.18133 1.04623 0.93864 0.95672 1.20402 0.97540 0.90893 0.99095 1.20642 1.02479 0.97352 0.96443 1.20885 0.97208 0.97714 0.95082 1.20085 1.04390 0.89369 1.00911 1.18380 0.99503 0.86049 0.95520 1.43987 1.46386 1.04362 1.17234 1.21698 0.93129 1.04070 0.80124 1.22545 1.00994 1.02507 0.93577 1.23127 1.03095 0.91359 1.02423 1.22960 1.01096 1.03513 0.93421 0.92315 0.94774 0.95075 0.84663 0.85234 0.73318 0.82746 0.85681 0.85890 0.85593 0.85995 0.89158 0.86669 0.87706 0.87114 0.88912 0.88645 0.88440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.87 21.32 27.47 -169.99 -4.67 16.65 16 4 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.26 -6.16 6.54 56.52 0.37 -5.79 16 7 C -0.52 -14.42 9.66 -34.44 -0.33 -14.76 16 8 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 9 C 0.00 -0.11 4.05 -27.88 -0.11 -0.23 16 10 C -0.57 -10.46 5.84 37.16 0.22 -10.24 16 11 S 2.57 42.90 5.12 -107.50 -0.55 42.35 16 12 O -0.95 -17.23 18.08 -57.54 -1.04 -18.27 16 13 O -0.93 -18.62 16.93 -65.15 -1.10 -19.72 16 14 N -1.05 -12.83 5.58 30.35 0.17 -12.66 16 15 C 0.61 8.13 7.52 -12.69 -0.10 8.04 16 16 O -0.48 -7.68 11.99 -13.07 -0.16 -7.83 16 17 C 0.02 0.24 6.81 -82.29 -0.56 -0.32 16 18 C -0.13 -1.30 10.29 -39.15 -0.40 -1.70 16 19 C -0.12 -1.20 6.16 -106.93 -0.66 -1.86 16 20 C -0.06 -0.49 10.06 -39.53 -0.40 -0.89 16 21 C -0.15 -1.08 9.96 -39.97 -0.40 -1.48 16 22 C -0.09 -0.65 10.01 -39.53 -0.40 -1.05 16 23 C -0.13 -1.10 10.00 -39.42 -0.39 -1.49 16 24 C 0.12 1.22 6.81 -83.97 -0.57 0.65 16 25 N -0.44 -4.97 2.82 -110.35 -0.31 -5.28 16 26 C 0.13 1.36 5.84 -4.04 -0.02 1.33 16 27 C -0.18 -1.78 6.01 -90.62 -0.54 -2.32 16 28 C -0.16 -1.82 10.03 -26.73 -0.27 -2.09 16 29 C -0.17 -1.50 10.25 -26.74 -0.27 -1.78 16 30 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 31 H 0.03 0.79 7.20 -51.93 -0.37 0.41 16 32 H 0.03 0.73 7.57 -51.93 -0.39 0.33 16 33 H 0.14 2.43 7.40 -51.93 -0.38 2.05 16 34 H 0.13 2.08 8.14 -51.92 -0.42 1.65 16 35 H 0.43 3.60 7.57 -34.47 -0.26 3.34 16 36 H 0.15 1.00 7.32 -52.48 -0.38 0.62 16 37 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 38 H 0.12 0.61 8.06 -52.48 -0.42 0.19 16 39 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 40 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 41 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.12 1.38 5.85 -51.93 -0.30 1.07 16 43 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.11 1.45 7.38 -51.93 -0.38 1.07 16 45 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 405.16 15.07 6.11 6.11 Total: -1.00 -35.91 405.16 -12.39 -48.30 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.30 Total: 4.69 kcal Atomic # 6 Polarization: -22.88 SS G_CDS: -5.31 Total: -28.19 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.63 Total: -44.07 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -2.30 Total: -45.83 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.67 Total: 16.65 kcal Atomic # 16 Polarization: 42.90 SS G_CDS: -0.55 Total: 42.35 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.91 -12.39 -48.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195580220.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.974 kcal (2) G-P(sol) polarization free energy of solvation -35.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds