Wall clock time and date at job start Tue Mar 31 2020 05:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35901 * 117.00313 * 2 1 4 4 C 1.38752 * 120.05719 * 5.70279 * 3 2 1 5 5 C 1.38121 * 119.94627 * 179.97438 * 4 3 2 6 6 C 1.38282 * 120.05669 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.94686 * 180.02562 * 6 5 4 8 8 C 1.53004 * 109.46738 * 300.00364 * 7 6 5 9 9 C 1.52997 * 109.46807 * 59.99979 * 7 6 5 10 10 C 1.38246 * 120.10940 * 0.02562 * 6 5 4 11 11 C 1.38161 * 120.05849 * 359.76661 * 10 6 5 12 12 S 1.76205 * 120.03269 * 180.25088 * 11 10 6 13 13 O 1.42094 * 106.40664 * 229.41859 * 12 11 10 14 14 O 1.42102 * 106.40013 * 2.34099 * 12 11 10 15 15 N 1.65602 * 107.21444 * 115.87772 * 12 11 10 16 16 C 1.38852 * 120.00156 * 297.86240 * 15 12 11 17 17 C 1.39569 * 119.84153 * 314.64823 * 16 15 12 18 18 C 1.36344 * 120.15726 * 179.71453 * 17 16 15 19 19 C 1.40888 * 119.83809 * 0.56024 * 18 17 16 20 20 C 1.41132 * 120.15737 * 179.69621 * 19 18 17 21 21 H 1.07996 * 120.00090 * 208.19231 * 20 19 18 22 22 C 1.39869 * 119.99931 * 28.19338 * 20 19 18 23 23 N 1.30898 * 120.00121 * 11.36491 * 22 20 19 24 24 Si 1.86800 * 119.99879 * 191.36950 * 22 20 19 25 25 H 1.48501 * 109.47449 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47497 * 119.99847 * 24 22 20 27 27 H 1.48508 * 109.46896 * 239.99870 * 24 22 20 28 28 C 1.40889 * 119.68638 * 359.71289 * 19 18 17 29 29 C 1.36341 * 119.83692 * 0.02562 * 28 19 18 30 30 H 1.09001 * 109.47639 * 175.37026 * 1 2 3 31 31 H 1.09006 * 109.47127 * 295.37327 * 1 2 3 32 32 H 1.09008 * 109.47033 * 55.36786 * 1 2 3 33 33 H 1.08001 * 120.02219 * 0.02562 * 4 3 2 34 34 H 1.07997 * 119.96865 * 180.02562 * 5 4 3 35 35 H 1.08993 * 109.47003 * 180.02562 * 7 6 5 36 36 H 1.08996 * 109.46793 * 180.02562 * 8 7 6 37 37 H 1.09004 * 109.47102 * 299.99561 * 8 7 6 38 38 H 1.09002 * 109.47166 * 59.99656 * 8 7 6 39 39 H 1.09000 * 109.47257 * 60.00238 * 9 7 6 40 40 H 1.09005 * 109.46874 * 180.02562 * 9 7 6 41 41 H 1.09003 * 109.47552 * 299.99981 * 9 7 6 42 42 H 1.08003 * 119.96944 * 180.02562 * 10 6 5 43 43 H 0.97001 * 119.99568 * 117.87282 * 15 12 11 44 44 H 1.07998 * 119.92236 * 359.97438 * 17 16 15 45 45 H 1.07995 * 120.08312 * 180.27334 * 18 17 16 46 46 H 0.97000 * 120.00075 * 180.02562 * 23 22 20 47 47 H 1.08006 * 120.07854 * 179.97438 * 28 19 18 48 48 H 1.08002 * 119.91798 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2968 2.3726 0.1193 5 6 1.9264 3.6020 0.1196 6 6 3.3022 3.6757 0.0016 7 6 3.9865 5.0183 0.0028 8 6 3.4689 5.8555 -1.1686 9 6 3.6883 5.7415 1.3176 10 6 4.0509 2.5196 -0.1174 11 6 3.4264 1.2872 -0.1139 12 16 4.3819 -0.1861 -0.2590 13 8 3.7682 -0.9638 -1.2776 14 8 5.7425 0.2211 -0.3055 15 7 4.1950 -1.0324 1.1521 16 6 4.6177 -0.4804 2.3540 17 6 5.8665 0.1379 2.4331 18 6 6.2856 0.6873 3.6085 19 6 5.4597 0.6192 4.7479 20 6 5.8895 1.1799 5.9697 21 1 5.5348 0.7729 6.9050 22 6 6.7748 2.2627 5.9691 23 7 7.0315 2.8977 4.8536 24 14 7.5910 2.8026 7.5602 25 1 7.1368 1.9282 8.6712 26 1 9.0658 2.6996 7.4199 27 1 7.2189 4.2099 7.8547 28 6 4.2028 -0.0116 4.6620 29 6 3.7945 -0.5519 3.4787 30 1 -0.3634 -1.0243 -0.0829 31 1 -0.3634 0.4404 0.9286 32 1 -0.3633 0.5841 -0.8456 33 1 0.2224 2.3155 0.2128 34 1 1.3436 4.5065 0.2129 35 1 5.0626 4.8777 -0.0991 36 1 3.9642 6.8264 -1.1681 37 1 3.6813 5.3402 -2.1054 38 1 2.3927 5.9961 -1.0672 39 1 4.0570 5.1451 2.1521 40 1 4.1830 6.7129 1.3183 41 1 2.6122 5.8822 1.4190 42 1 5.1253 2.5797 -0.2090 43 1 3.7903 -1.9139 1.1389 44 1 6.5006 0.1851 1.5601 45 1 7.2502 1.1693 3.6672 46 1 7.6458 3.6484 4.8531 47 1 3.5648 -0.0678 5.5316 48 1 2.8314 -1.0361 3.4114 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000223013267.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:18 Heat of formation + Delta-G solvation = -74.612191 kcal Electronic energy + Delta-G solvation = -33166.955951 eV Core-core repulsion = 28892.592437 eV Total energy + Delta-G solvation = -4274.363515 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.134 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.30487 -38.22216 -38.00599 -36.59965 -35.38123 -34.78385 -34.72712 -32.75603 -31.30472 -29.53530 -29.44190 -28.67527 -27.26125 -27.09736 -24.70029 -23.68100 -22.49227 -21.22245 -20.85732 -20.55442 -18.79338 -18.31034 -17.35920 -17.08601 -16.96503 -16.23649 -16.17576 -15.81967 -15.22116 -15.05715 -14.60214 -14.42322 -14.20364 -14.03618 -13.58733 -13.51919 -13.44256 -12.86867 -12.79373 -12.57435 -12.36946 -12.21654 -12.19300 -12.12647 -11.81100 -11.67283 -11.57808 -11.55909 -11.32409 -11.31900 -11.12675 -11.07742 -10.85038 -10.73252 -10.71343 -10.50676 -10.38631 -10.07020 -9.73521 -9.30075 -9.27103 -8.90023 -8.17424 -7.60233 -7.10772 -6.76792 -4.37133 0.81692 1.08352 1.42368 2.68946 3.04368 3.06269 3.10115 3.10509 3.13598 3.40693 3.65903 3.90375 4.17107 4.56460 4.59776 4.67323 4.82458 4.95780 5.03280 5.06267 5.10436 5.22857 5.34826 5.40969 5.46450 5.61031 5.61490 5.63927 5.71879 5.83880 5.91397 5.97955 6.10104 6.17814 6.18147 6.23503 6.27693 6.38313 6.41227 6.57528 6.72747 6.95979 7.01810 7.16122 7.19186 7.19595 7.49194 7.59487 7.89060 8.01149 8.13191 8.23160 8.59541 8.83906 8.92357 10.16488 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.008232 B = 0.003948 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3400.430415 B = 7089.964332 C = 8752.638617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.309 6.309 3 C 0.221 3.779 4 C -0.228 4.228 5 C -0.025 4.025 6 C -0.131 4.131 7 C -0.053 4.053 8 C -0.143 4.143 9 C -0.146 4.146 10 C 0.025 3.975 11 C -0.689 4.689 12 S 2.689 3.311 13 O -0.971 6.971 14 O -0.958 6.958 15 N -1.027 6.027 16 C -0.002 4.002 17 C -0.123 4.123 18 C -0.144 4.144 19 C 0.108 3.892 20 C -0.455 4.455 21 H 0.078 0.922 22 C 0.073 3.927 23 N -0.793 5.793 24 Si 0.910 3.090 25 H -0.261 1.261 26 H -0.272 1.272 27 H -0.275 1.275 28 C -0.214 4.214 29 C -0.089 4.089 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.083 0.917 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.053 0.947 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.148 0.852 43 H 0.411 0.589 44 H 0.125 0.875 45 H 0.125 0.875 46 H 0.281 0.719 47 H 0.094 0.906 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.349 3.316 -8.702 13.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.221 6.221 3 C 0.173 3.827 4 C -0.247 4.247 5 C -0.044 4.044 6 C -0.132 4.132 7 C -0.072 4.072 8 C -0.201 4.201 9 C -0.203 4.203 10 C 0.006 3.994 11 C -0.775 4.775 12 S 2.780 3.220 13 O -0.961 6.961 14 O -0.948 6.948 15 N -0.779 5.779 16 C -0.098 4.098 17 C -0.144 4.144 18 C -0.164 4.164 19 C 0.105 3.895 20 C -0.485 4.485 21 H 0.096 0.904 22 C -0.145 4.145 23 N -0.419 5.419 24 Si 0.734 3.266 25 H -0.185 1.185 26 H -0.197 1.197 27 H -0.200 1.200 28 C -0.235 4.235 29 C -0.111 4.111 30 H 0.122 0.878 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.150 0.850 34 H 0.145 0.855 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.165 0.835 43 H 0.246 0.754 44 H 0.143 0.857 45 H 0.143 0.857 46 H 0.091 0.909 47 H 0.113 0.887 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.600 3.239 -9.603 13.959 hybrid contribution -0.771 0.646 1.202 1.567 sum -10.371 3.885 -8.401 13.900 Atomic orbital electron populations 1.23130 0.77581 1.04408 1.01536 1.86105 1.22222 1.26401 1.87419 1.18252 0.90472 0.84668 0.89322 1.21194 1.00116 0.92355 1.11045 1.20956 0.94144 0.96878 0.92394 1.19832 0.93650 0.95126 1.04586 1.20073 1.00108 0.91141 0.95846 1.21879 1.00953 0.99458 0.97786 1.21873 1.01296 1.00122 0.96997 1.20761 1.00326 0.89545 0.88792 1.30165 1.04015 1.19961 1.23375 1.02341 0.74053 0.73056 0.72502 1.93531 1.78101 1.68864 1.55568 1.93529 1.32105 1.83135 1.86055 1.52288 1.76415 1.27549 1.21677 1.16820 0.96059 1.11516 0.85376 1.21210 0.93782 0.99896 0.99492 1.21049 1.00728 1.02480 0.92182 1.17733 0.89689 0.88714 0.93333 1.19600 1.22664 1.12368 0.93861 0.90385 1.25914 0.94993 0.95694 0.97864 1.69830 1.28021 1.16288 1.27727 0.86235 0.79447 0.78896 0.81989 1.18479 1.19684 1.20010 1.20653 0.97447 1.08967 0.96437 1.20271 0.96887 1.00622 0.93348 0.87778 0.92252 0.92355 0.84991 0.85460 0.89904 0.92352 0.92602 0.92779 0.91516 0.92448 0.92938 0.83462 0.75366 0.85722 0.85701 0.90851 0.88733 0.89114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.82 101.05 0.99 1.27 16 2 O -0.31 -4.64 9.32 -28.19 -0.26 -4.90 16 3 C 0.22 3.56 6.63 -39.22 -0.26 3.30 16 4 C -0.23 -3.07 9.03 -39.43 -0.36 -3.43 16 5 C -0.03 -0.33 8.70 -39.61 -0.34 -0.68 16 6 C -0.13 -1.91 4.78 -104.60 -0.50 -2.41 16 7 C -0.05 -0.66 3.09 -91.77 -0.28 -0.95 16 8 C -0.14 -1.43 9.01 37.16 0.33 -1.09 16 9 C -0.15 -1.79 9.01 37.16 0.33 -1.46 16 10 C 0.02 0.42 9.17 -39.61 -0.36 0.06 16 11 C -0.69 -12.31 5.79 -39.43 -0.23 -12.54 16 12 S 2.69 51.03 5.20 -107.50 -0.56 50.47 16 13 O -0.97 -19.36 17.34 -62.22 -1.08 -20.44 16 14 O -0.96 -20.04 14.00 -57.17 -0.80 -20.84 16 15 N -1.03 -19.11 5.73 32.51 0.19 -18.92 16 16 C 0.00 -0.04 6.16 -83.69 -0.52 -0.56 16 17 C -0.12 -2.91 9.14 -39.77 -0.36 -3.27 16 18 C -0.14 -3.68 8.60 -39.26 -0.34 -4.02 16 19 C 0.11 2.79 5.56 -106.79 -0.59 2.19 16 20 C -0.45 -11.61 9.04 -37.87 -0.34 -11.96 16 21 H 0.08 1.91 7.87 -52.49 -0.41 1.50 16 22 C 0.07 1.77 5.24 -17.34 -0.09 1.68 16 23 N -0.79 -19.81 10.82 55.54 0.60 -19.21 16 24 Si 0.91 18.15 29.57 -169.99 -5.03 13.13 16 25 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 26 H -0.27 -5.36 7.11 56.52 0.40 -4.95 16 27 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 28 C -0.21 -5.03 9.74 -39.26 -0.38 -5.42 16 29 C -0.09 -1.92 9.90 -39.77 -0.39 -2.32 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.51 7.69 -51.93 -0.40 0.11 16 32 H 0.06 0.48 7.65 -51.92 -0.40 0.08 16 33 H 0.13 1.35 6.33 -52.49 -0.33 1.02 16 34 H 0.13 1.30 7.09 -52.49 -0.37 0.92 16 35 H 0.08 1.05 7.87 -51.93 -0.41 0.64 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.05 0.49 7.38 -51.93 -0.38 0.10 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.58 7.38 -51.93 -0.38 0.19 16 42 H 0.15 2.47 7.22 -52.48 -0.38 2.09 16 43 H 0.41 6.54 8.95 -34.47 -0.31 6.23 16 44 H 0.13 2.92 5.60 -52.49 -0.29 2.63 16 45 H 0.13 3.30 6.18 -52.49 -0.32 2.98 16 46 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 47 H 0.09 2.08 8.06 -52.48 -0.42 1.65 16 48 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 LS Contribution 404.07 15.07 6.09 6.09 Total: -1.00 -31.06 404.07 -11.04 -42.10 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -6.49 Total: 14.11 kcal Atomic # 6 Polarization: -37.89 SS G_CDS: -3.70 Total: -41.59 kcal Atomic # 7 Polarization: -38.92 SS G_CDS: 0.79 Total: -38.13 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: -2.14 Total: -46.17 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.13 kcal Atomic # 16 Polarization: 51.03 SS G_CDS: -0.56 Total: 50.47 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.06 -11.04 -42.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223013267.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.511 kcal (2) G-P(sol) polarization free energy of solvation -31.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds