Wall clock time and date at job start Tue Mar 31 2020 05:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47295 * 2 1 4 4 C 1.38858 * 120.00226 * 275.00049 * 3 2 1 5 5 C 1.39559 * 119.84018 * 233.34381 * 4 3 2 6 6 C 1.36343 * 120.15967 * 179.71494 * 5 4 3 7 7 C 1.40889 * 119.83359 * 0.55370 * 6 5 4 8 8 C 1.41142 * 120.15554 * 179.69296 * 7 6 5 9 9 H 1.08000 * 119.99964 * 207.33469 * 8 7 6 10 10 C 1.39860 * 119.99806 * 27.34122 * 8 7 6 11 11 N 1.30905 * 120.00174 * 10.96699 * 10 8 7 12 12 Si 1.86792 * 120.00005 * 190.97330 * 10 8 7 13 13 H 1.48500 * 109.47355 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47272 * 119.99798 * 12 10 8 15 15 H 1.48506 * 109.47197 * 239.99630 * 12 10 8 16 16 C 1.40887 * 119.68905 * 359.72280 * 7 6 5 17 17 C 1.36336 * 119.83732 * 359.97438 * 16 7 6 18 18 S 1.65595 * 119.99852 * 94.99877 * 3 2 1 19 19 O 1.42101 * 106.40321 * 198.06040 * 18 3 2 20 20 O 1.42106 * 106.40632 * 330.98171 * 18 3 2 21 21 C 1.76198 * 107.21994 * 84.52063 * 18 3 2 22 22 C 1.38288 * 119.94426 * 275.43924 * 21 18 3 23 23 C 1.38125 * 120.05347 * 179.72380 * 22 21 18 24 24 C 1.38753 * 119.94543 * 0.52616 * 23 22 21 25 25 O 1.35898 * 120.05781 * 179.72925 * 24 23 22 26 26 C 1.42904 * 117.00018 * 0.02562 * 25 24 23 27 27 C 1.38708 * 119.88711 * 359.74448 * 24 23 22 28 28 C 1.50704 * 120.02927 * 180.02562 * 27 24 23 29 29 C 1.38166 * 119.94718 * 0.02562 * 27 24 23 30 30 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.46790 * 59.99704 * 1 2 3 32 32 H 1.08996 * 109.47166 * 299.99871 * 1 2 3 33 33 H 1.09000 * 109.47192 * 119.99939 * 2 1 3 34 34 H 1.09005 * 109.47305 * 240.00060 * 2 1 3 35 35 H 1.08000 * 119.92248 * 359.97438 * 5 4 3 36 36 H 1.08002 * 120.08593 * 180.27391 * 6 5 4 37 37 H 0.96997 * 120.00494 * 179.97438 * 11 10 8 38 38 H 1.07998 * 120.07802 * 179.97438 * 16 7 6 39 39 H 1.07996 * 119.92006 * 179.97438 * 17 16 7 40 40 H 1.07993 * 119.97314 * 359.97438 * 22 21 18 41 41 H 1.08004 * 120.02755 * 180.25091 * 23 22 21 42 42 H 1.09004 * 109.46935 * 299.99970 * 26 25 24 43 43 H 1.08993 * 109.47436 * 59.99908 * 26 25 24 44 44 H 1.08992 * 109.47183 * 180.02562 * 26 25 24 45 45 H 1.08998 * 109.47600 * 269.98646 * 28 27 24 46 46 H 1.09001 * 109.46536 * 29.98282 * 28 27 24 47 47 H 1.08997 * 109.47028 * 149.98009 * 28 27 24 48 48 H 1.07996 * 119.97396 * 179.97438 * 29 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1510 2.0708 -1.1979 5 6 3.3678 2.6727 -1.5217 6 6 3.5070 3.3464 -2.6988 7 6 2.4152 3.4440 -3.5839 8 6 2.5498 4.1454 -4.8013 9 1 1.6852 4.6022 -5.2598 10 6 3.8029 4.2486 -5.4139 11 7 4.8040 3.5238 -4.9827 12 14 4.0479 5.4210 -6.8473 13 1 2.7704 6.1192 -7.1398 14 1 5.0896 6.4199 -6.4974 15 1 4.4786 4.6556 -8.0448 16 6 1.1881 2.8388 -3.2477 17 6 1.0652 2.1630 -2.0701 18 16 2.4122 2.1202 1.4287 19 8 2.4316 3.5166 1.1662 20 8 1.5913 1.5282 2.4263 21 6 4.0699 1.6630 1.8128 22 6 4.3231 0.4728 2.4697 23 6 5.6222 0.1095 2.7668 24 6 6.6727 0.9450 2.4153 25 8 7.9513 0.5924 2.7115 26 6 8.1412 -0.6533 3.3856 27 6 6.4156 2.1410 1.7615 28 6 7.5542 3.0507 1.3778 29 6 5.1147 2.4977 1.4622 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 4.2024 2.6011 -0.8400 36 1 4.4505 3.8080 -2.9501 37 1 5.6730 3.5951 -5.4078 38 1 0.3470 2.9101 -3.9214 39 1 0.1252 1.6989 -1.8109 40 1 3.5049 -0.1751 2.7470 41 1 5.8198 -0.8222 3.2763 42 1 7.6142 -0.6342 4.3395 43 1 7.7492 -1.4629 2.7701 44 1 9.2049 -0.8126 3.5617 45 1 7.7515 3.7489 2.1911 46 1 8.4465 2.4547 1.1861 47 1 7.2882 3.6061 0.4784 48 1 4.9140 3.4289 0.9535 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224647638.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:40 Heat of formation + Delta-G solvation = -59.871240 kcal Electronic energy + Delta-G solvation = -32714.728390 eV Core-core repulsion = 28441.004091 eV Total energy + Delta-G solvation = -4273.724299 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 375.134 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -40.48468 -38.33284 -37.70038 -36.94010 -35.74984 -35.43402 -33.32041 -33.03851 -30.82194 -30.50923 -29.33070 -28.55275 -27.93645 -26.89478 -24.94481 -22.77952 -22.57590 -22.07472 -21.10656 -20.89243 -18.56748 -18.30824 -17.47975 -17.33805 -16.88152 -16.68309 -16.12204 -16.06392 -15.22726 -14.79366 -14.59570 -14.26162 -14.14513 -13.88944 -13.70104 -13.60285 -13.34873 -13.20108 -12.81425 -12.73871 -12.48462 -12.39613 -12.34062 -12.17915 -12.00827 -11.76323 -11.67107 -11.58281 -11.52668 -11.44680 -11.21635 -11.12359 -11.09579 -10.95585 -10.73515 -10.68291 -10.44102 -9.74673 -9.57294 -9.24836 -9.08393 -8.87048 -8.54583 -7.61232 -7.12361 -6.75583 -4.38187 0.64067 0.93719 1.15371 2.65138 2.91423 3.04338 3.06959 3.11553 3.12092 3.17467 3.53142 3.91162 4.11960 4.40969 4.52207 4.56311 4.68460 4.80835 4.84183 5.07797 5.11409 5.12939 5.17884 5.37496 5.40905 5.48010 5.54390 5.65094 5.67216 5.72515 5.82658 5.89744 5.96573 6.03359 6.10771 6.16595 6.17627 6.19109 6.45116 6.54862 6.61361 6.75021 7.00545 7.04953 7.05270 7.18906 7.31312 7.55369 7.90468 7.97510 8.05523 8.22428 8.57884 8.84559 8.92049 10.16280 Molecular weight = 375.13amu Principal moments of inertia in cm(-1) A = 0.008746 B = 0.003417 C = 0.002676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.666282 B = 8191.708216 C =10461.474718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.123 3.877 3 N -0.919 5.919 4 C 0.008 3.992 5 C -0.106 4.106 6 C -0.143 4.143 7 C 0.109 3.891 8 C -0.453 4.453 9 H 0.079 0.921 10 C 0.071 3.929 11 N -0.797 5.797 12 Si 0.912 3.088 13 H -0.261 1.261 14 H -0.272 1.272 15 H -0.275 1.275 16 C -0.213 4.213 17 C -0.090 4.090 18 S 2.684 3.316 19 O -0.942 6.942 20 O -0.970 6.970 21 C -0.704 4.704 22 C 0.011 3.989 23 C -0.228 4.228 24 C 0.174 3.826 25 O -0.309 6.309 26 C 0.024 3.976 27 C -0.134 4.134 28 C -0.107 4.107 29 C 0.020 3.980 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.127 0.873 37 H 0.280 0.720 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.138 0.862 41 H 0.135 0.865 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.102 0.898 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.214 -8.669 12.787 16.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.002 4.002 3 N -0.750 5.750 4 C -0.086 4.086 5 C -0.127 4.127 6 C -0.163 4.163 7 C 0.106 3.894 8 C -0.482 4.482 9 H 0.097 0.903 10 C -0.145 4.145 11 N -0.423 5.423 12 Si 0.736 3.264 13 H -0.184 1.184 14 H -0.197 1.197 15 H -0.200 1.200 16 C -0.234 4.234 17 C -0.111 4.111 18 S 2.777 3.223 19 O -0.933 6.933 20 O -0.960 6.960 21 C -0.790 4.790 22 C -0.008 4.008 23 C -0.247 4.247 24 C 0.127 3.873 25 O -0.222 6.222 26 C -0.071 4.071 27 C -0.135 4.135 28 C -0.164 4.164 29 C 0.000 4.000 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.145 0.855 37 H 0.091 0.909 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.156 0.844 41 H 0.153 0.847 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.120 0.880 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.093 0.907 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.142 -8.126 13.254 16.375 hybrid contribution 0.855 -0.393 -0.620 1.127 sum 5.996 -8.519 12.634 16.376 Atomic orbital electron populations 1.22436 0.96062 1.01987 1.03335 1.21252 0.94814 0.81768 1.02404 1.54531 1.78431 1.21815 1.20267 1.16679 0.94939 1.07995 0.88961 1.20476 0.93665 1.00971 0.97612 1.20996 1.00713 1.02439 0.92194 1.17697 0.90849 0.88860 0.92014 1.19616 0.94441 1.29204 1.04990 0.90277 1.25923 0.95463 0.94682 0.98471 1.69822 1.02344 1.32225 1.37918 0.86203 0.79456 0.80394 0.80325 1.18422 1.19726 1.20022 1.20675 0.99023 1.05420 0.98241 1.20441 0.95641 0.99824 0.95161 1.02322 0.73718 0.73756 0.72538 1.93586 1.86548 1.28868 1.84266 1.93530 1.65504 1.78999 1.57977 1.31070 1.25045 1.06014 1.16824 1.20618 0.96749 0.92951 0.90508 1.21260 0.92926 1.01823 1.08700 1.19077 0.83214 0.92950 0.92037 1.86098 1.24004 1.39116 1.72943 1.23135 1.03493 0.84107 0.96387 1.19386 0.95784 0.95075 1.03289 1.20655 0.95690 0.98103 1.01930 1.20796 0.90132 0.97499 0.91529 0.91971 0.91096 0.91971 0.91338 0.90100 0.89474 0.85537 0.90929 0.88514 0.88201 0.84413 0.84708 0.92389 0.92292 0.87979 0.91201 0.91026 0.90729 0.83087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.47 10.03 37.16 0.37 -2.09 16 2 C 0.12 1.81 5.85 -4.04 -0.02 1.79 16 3 N -0.92 -16.71 2.88 -58.50 -0.17 -16.88 16 4 C 0.01 0.17 5.13 -83.69 -0.43 -0.26 16 5 C -0.11 -2.44 8.87 -39.77 -0.35 -2.79 16 6 C -0.14 -3.63 8.61 -39.26 -0.34 -3.97 16 7 C 0.11 2.81 5.57 -106.79 -0.59 2.21 16 8 C -0.45 -11.62 9.05 -37.87 -0.34 -11.97 16 9 H 0.08 1.95 7.87 -52.49 -0.41 1.54 16 10 C 0.07 1.74 5.26 -17.34 -0.09 1.65 16 11 N -0.80 -19.89 10.74 55.54 0.60 -19.29 16 12 Si 0.91 18.25 29.57 -169.99 -5.03 13.23 16 13 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 14 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 15 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 16 C -0.21 -5.04 9.74 -39.27 -0.38 -5.43 16 17 C -0.09 -1.95 9.39 -39.77 -0.37 -2.32 16 18 S 2.68 48.75 5.20 -107.50 -0.56 48.19 16 19 O -0.94 -20.12 15.77 -57.17 -0.90 -21.02 16 20 O -0.97 -17.88 16.45 -57.17 -0.94 -18.82 16 21 C -0.70 -11.18 5.87 -39.56 -0.23 -11.41 16 22 C 0.01 0.15 9.51 -39.60 -0.38 -0.23 16 23 C -0.23 -2.71 9.04 -39.43 -0.36 -3.07 16 24 C 0.17 2.25 6.66 -39.22 -0.26 1.99 16 25 O -0.31 -3.45 9.54 -19.42 -0.19 -3.63 16 26 C 0.02 0.16 9.81 101.05 0.99 1.15 16 27 C -0.13 -1.90 5.89 -104.47 -0.62 -2.51 16 28 C -0.11 -1.29 9.79 36.01 0.35 -0.94 16 29 C 0.02 0.31 7.73 -39.60 -0.31 0.00 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 1.02 5.17 -51.93 -0.27 0.75 16 32 H 0.06 0.90 7.99 -51.93 -0.42 0.48 16 33 H 0.07 0.84 7.76 -51.93 -0.40 0.44 16 34 H 0.08 1.16 8.09 -51.93 -0.42 0.74 16 35 H 0.09 1.81 5.62 -52.49 -0.29 1.52 16 36 H 0.13 3.29 6.10 -52.49 -0.32 2.97 16 37 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 38 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 39 H 0.10 1.90 5.09 -52.49 -0.27 1.63 16 40 H 0.14 1.57 7.74 -52.49 -0.41 1.16 16 41 H 0.14 1.16 6.30 -52.48 -0.33 0.83 16 42 H 0.06 0.34 7.66 -51.93 -0.40 -0.06 16 43 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 44 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.07 0.81 7.53 -51.93 -0.39 0.42 16 47 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 48 H 0.15 2.43 6.91 -52.49 -0.36 2.06 16 LS Contribution 399.67 15.07 6.02 6.02 Total: -1.00 -31.05 399.67 -10.86 -41.91 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -6.33 Total: 8.49 kcal Atomic # 6 Polarization: -34.83 SS G_CDS: -3.36 Total: -38.19 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.43 Total: -36.17 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -2.03 Total: -43.48 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 16 Polarization: 48.75 SS G_CDS: -0.56 Total: 48.19 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.05 -10.86 -41.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224647638.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.961 kcal (2) G-P(sol) polarization free energy of solvation -31.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds